Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.3892.1

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X
3,758,149	+		Xcc-8004.3891.1	0.81	-1.3
3,758,149	+		Xcc-8004.3891.1	0.81	-1.2
3,758,150	-		Xcc-8004.3891.1	0.81	-0.5
3,758,216	-		Xcc-8004.3891.1	0.84	+0.5
3,758,216	-		Xcc-8004.3891.1	0.84	-1.2
3,758,251	+		Xcc-8004.3891.1	0.86	-1.2
3,758,251	+		Xcc-8004.3891.1	0.86	-1.1
3,758,252	-		Xcc-8004.3891.1	0.86	-1.5
3,758,252	-		Xcc-8004.3891.1	0.86	+0.2
3,758,409	+				+1.3
3,758,409	+				-1.9
3,758,410	-				+0.2
3,758,410	-				-1.3
3,758,432	+				+0.6
3,758,432	+				+0.3
3,758,432	+				-1.1
3,758,433	-				+0.9
3,758,543	+				+0.2
3,758,544	-				-2.8
3,758,588	-				-0.1
3,758,588	-				+0.3
3,758,722	+				+1.2
3,758,722	+				-0.5
3,758,722	+				-0.3
3,758,722	+				+1.0
3,758,722	+				-1.0
3,758,722	+				-1.0
3,758,722	+				+1.1
3,758,722	+				-0.3
3,758,722	+				-1.4
3,758,722	+				+1.1
3,758,722	+				-0.1
3,758,723	-				-1.5
3,758,723	-				-0.2
3,758,723	-				-0.1
3,758,723	-				-0.3
3,758,723	-				-0.7
3,758,723	-				-1.6
3,758,723	-				-0.1
3,758,723	-				+1.5
3,758,723	-				-0.4
3,758,723	-				+0.8
3,758,820	+				+0.3
3,758,821	-				+0.3
3,758,919	+				-1.0
3,758,919	+				-0.1
3,758,919	+				-1.2
3,758,919	+				+0.0
3,758,920	-				-0.4
3,759,050	+				-1.0
3,759,050	+				-0.3
3,759,050	+				+0.4
3,759,050	+				-1.5
3,759,050	+				-0.8
3,759,050	+				+1.8
3,759,050	+				+0.3
3,759,050	+				+0.7
3,759,050	+				+0.1
3,759,050	+				+0.1
3,759,050	+				-0.9
3,759,050	+				+0.8
3,759,051	-				-0.5
3,759,051	-				+0.1
3,759,051	-				-1.1
3,759,051	-				+0.1
3,759,051	-				-1.1
3,759,128	+		Xcc-8004.3892.1	0.10	+0.8
3,759,128	+		Xcc-8004.3892.1	0.10	+1.0
3,759,129	-		Xcc-8004.3892.1	0.10	-0.2
3,759,152	+		Xcc-8004.3892.1	0.12	-0.1
3,759,153	-		Xcc-8004.3892.1	0.13	+0.3
3,759,330	+		Xcc-8004.3892.1	0.30	+0.6
3,759,330	+		Xcc-8004.3892.1	0.30	-1.7
3,759,330	+		Xcc-8004.3892.1	0.30	-0.3
3,759,479	+		Xcc-8004.3892.1	0.44	-0.3
3,759,479	+		Xcc-8004.3892.1	0.44	+0.4
3,759,479	+		Xcc-8004.3892.1	0.44	+1.5
3,759,480	-		Xcc-8004.3892.1	0.44	+1.0
3,759,480	-		Xcc-8004.3892.1	0.44	+0.9
3,759,480	-		Xcc-8004.3892.1	0.44	+0.5
3,759,480	-		Xcc-8004.3892.1	0.44	+0.7
3,759,480	-		Xcc-8004.3892.1	0.44	+0.5
3,759,480	-		Xcc-8004.3892.1	0.44	-1.2
3,759,507	+		Xcc-8004.3892.1	0.47	+0.5
3,759,508	-		Xcc-8004.3892.1	0.47	+1.3
3,759,508	-		Xcc-8004.3892.1	0.47	-1.6
3,759,593	+		Xcc-8004.3892.1	0.56	+0.2
3,759,594	-		Xcc-8004.3892.1	0.56	-0.4
3,759,659	+		Xcc-8004.3892.1	0.62	-0.9
3,759,659	+		Xcc-8004.3892.1	0.62	+0.3
3,759,660	-		Xcc-8004.3892.1	0.62	+0.1
3,759,660	-		Xcc-8004.3892.1	0.62	-0.1
3,759,705	+		Xcc-8004.3892.1	0.66	-0.2
3,759,706	-		Xcc-8004.3892.1	0.67	+0.3
3,759,842	-		Xcc-8004.3892.1	0.80	+0.4
3,759,864	+		Xcc-8004.3892.1	0.82	-0.5
3,759,864	+		Xcc-8004.3892.1	0.82	+0.8
3,759,864	+		Xcc-8004.3892.1	0.82	-2.1
3,759,864	+		Xcc-8004.3892.1	0.82	+0.4
3,759,864	+		Xcc-8004.3892.1	0.82	-0.2
3,759,865	-		Xcc-8004.3892.1	0.82	+0.6
3,759,882	+		Xcc-8004.3892.1	0.84	+0.1
3,759,882	+		Xcc-8004.3892.1	0.84	+0.5
3,760,110	+				-1.4
3,760,110	+				-0.5
3,760,110	+				-0.0
3,760,110	+				+0.3
3,760,110	+				-1.5
3,760,111	-				-0.8
3,760,111	-				+0.1
3,760,111	-				+0.8
3,760,111	-				+1.3
3,760,202	-				-0.4
3,760,210	+				+0.2
3,760,210	+				-0.3
3,760,211	-				-1.3
3,760,211	-				-0.3
3,760,235	-				-1.0
3,760,235	-				-1.8
3,760,446	-				-0.7
3,760,446	-				+0.4
3,760,733	+		Xcc-8004.3893.1	0.16	-0.6
3,760,733	+		Xcc-8004.3893.1	0.16	+0.4
3,760,733	+		Xcc-8004.3893.1	0.16	+0.8
3,760,733	+		Xcc-8004.3893.1	0.16	-1.5
3,760,734	-		Xcc-8004.3893.1	0.16	-0.2
3,760,734	-		Xcc-8004.3893.1	0.16	-0.7
3,760,734	-		Xcc-8004.3893.1	0.16	+0.5
3,760,734	-		Xcc-8004.3893.1	0.16	+1.4
3,760,734	-		Xcc-8004.3893.1	0.16	+0.4
3,760,738	-		Xcc-8004.3893.1	0.17	+0.5
3,760,738	-		Xcc-8004.3893.1	0.17	+0.6
3,760,955	+		Xcc-8004.3893.1	0.28	-0.4