Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.3887.1 and Xcc-8004.3888.1 are separated by 116 nucleotides Xcc-8004.3888.1 and Xcc-8004.3889.1 are separated by 254 nucleotides Xcc-8004.3889.1 and Xcc-8004.3891.1 are separated by 204 nucleotides
Xcc-8004.3887.1: Xcc-8004.3887.1 - hypothetical protein, at 3,754,223 to 3,754,948
Xcc-8004.3887.1
Xcc-8004.3888.1: Xcc-8004.3888.1 - FIG01210089: hypothetical protein, at 3,755,065 to 3,755,574
Xcc-8004.3888.1
Xcc-8004.3889.1: Xcc-8004.3889.1 - FIG01210587: hypothetical protein, at 3,755,829 to 3,756,233
Xcc-8004.3889.1
Xcc-8004.3891.1: Xcc-8004.3891.1 - alanyl dipeptidyl peptidase, at 3,756,438 to 3,758,555
Xcc-8004.3891.1
Position (kb) 3755
3756
3757 Strain fitness (log2 ratio) -2
-1
0
1 at 3754.858 kb on + strand, within Xcc-8004.3887.1 at 3754.858 kb on + strand, within Xcc-8004.3887.1 at 3754.858 kb on + strand, within Xcc-8004.3887.1 at 3754.860 kb on + strand, within Xcc-8004.3887.1 at 3754.861 kb on - strand, within Xcc-8004.3887.1 at 3755.034 kb on - strand at 3755.034 kb on - strand at 3755.369 kb on + strand, within Xcc-8004.3888.1 at 3755.370 kb on - strand, within Xcc-8004.3888.1 at 3755.548 kb on + strand at 3755.549 kb on - strand at 3755.674 kb on + strand at 3755.674 kb on + strand at 3755.675 kb on - strand at 3755.709 kb on + strand at 3755.710 kb on - strand at 3755.813 kb on - strand at 3755.853 kb on + strand at 3755.853 kb on + strand at 3755.854 kb on - strand at 3755.854 kb on - strand at 3756.102 kb on + strand, within Xcc-8004.3889.1 at 3756.102 kb on + strand, within Xcc-8004.3889.1 at 3756.103 kb on - strand, within Xcc-8004.3889.1 at 3756.103 kb on - strand, within Xcc-8004.3889.1 at 3756.103 kb on - strand, within Xcc-8004.3889.1 at 3756.106 kb on + strand, within Xcc-8004.3889.1 at 3756.107 kb on - strand, within Xcc-8004.3889.1 at 3756.114 kb on + strand, within Xcc-8004.3889.1 at 3756.160 kb on - strand, within Xcc-8004.3889.1 at 3756.232 kb on - strand at 3756.232 kb on - strand at 3756.232 kb on - strand at 3756.232 kb on - strand at 3756.242 kb on - strand at 3756.535 kb on + strand at 3756.685 kb on + strand, within Xcc-8004.3891.1 at 3756.685 kb on + strand, within Xcc-8004.3891.1 at 3756.754 kb on + strand, within Xcc-8004.3891.1 at 3756.754 kb on + strand, within Xcc-8004.3891.1 at 3756.755 kb on - strand, within Xcc-8004.3891.1 at 3756.835 kb on + strand, within Xcc-8004.3891.1 at 3756.835 kb on + strand, within Xcc-8004.3891.1 at 3756.835 kb on + strand, within Xcc-8004.3891.1 at 3756.844 kb on + strand, within Xcc-8004.3891.1 at 3756.844 kb on + strand, within Xcc-8004.3891.1 at 3756.845 kb on - strand, within Xcc-8004.3891.1 at 3757.030 kb on + strand, within Xcc-8004.3891.1 at 3757.031 kb on - strand, within Xcc-8004.3891.1 at 3757.046 kb on - strand, within Xcc-8004.3891.1 at 3757.127 kb on - strand, within Xcc-8004.3891.1 at 3757.144 kb on + strand, within Xcc-8004.3891.1 at 3757.144 kb on + strand, within Xcc-8004.3891.1 at 3757.144 kb on + strand, within Xcc-8004.3891.1 at 3757.144 kb on + strand, within Xcc-8004.3891.1 at 3757.144 kb on + strand, within Xcc-8004.3891.1 at 3757.144 kb on + strand, within Xcc-8004.3891.1 at 3757.144 kb on + strand, within Xcc-8004.3891.1 at 3757.145 kb on - strand, within Xcc-8004.3891.1 at 3757.145 kb on - strand, within Xcc-8004.3891.1 at 3757.145 kb on - strand, within Xcc-8004.3891.1 at 3757.145 kb on - strand, within Xcc-8004.3891.1 at 3757.150 kb on + strand, within Xcc-8004.3891.1 at 3757.165 kb on + strand, within Xcc-8004.3891.1 at 3757.165 kb on + strand, within Xcc-8004.3891.1 at 3757.166 kb on - strand, within Xcc-8004.3891.1
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X remove 3,754,858 + Xcc-8004.3887.1 0.87 -0.4 3,754,858 + Xcc-8004.3887.1 0.87 +0.0 3,754,858 + Xcc-8004.3887.1 0.87 +0.4 3,754,860 + Xcc-8004.3887.1 0.88 +0.3 3,754,861 - Xcc-8004.3887.1 0.88 -0.9 3,755,034 - +0.0 3,755,034 - -2.1 3,755,369 + Xcc-8004.3888.1 0.60 +0.9 3,755,370 - Xcc-8004.3888.1 0.60 -1.3 3,755,548 + +1.0 3,755,549 - -1.9 3,755,674 + +0.7 3,755,674 + -0.6 3,755,675 - +1.2 3,755,709 + -0.1 3,755,710 - +0.5 3,755,813 - -1.7 3,755,853 + +0.9 3,755,853 + -0.6 3,755,854 - +1.0 3,755,854 - -0.3 3,756,102 + Xcc-8004.3889.1 0.67 +0.6 3,756,102 + Xcc-8004.3889.1 0.67 -0.3 3,756,103 - Xcc-8004.3889.1 0.68 -0.8 3,756,103 - Xcc-8004.3889.1 0.68 -0.7 3,756,103 - Xcc-8004.3889.1 0.68 -0.6 3,756,106 + Xcc-8004.3889.1 0.68 +0.6 3,756,107 - Xcc-8004.3889.1 0.69 -0.2 3,756,114 + Xcc-8004.3889.1 0.70 -0.3 3,756,160 - Xcc-8004.3889.1 0.82 -1.0 3,756,232 - +1.3 3,756,232 - +0.8 3,756,232 - +0.1 3,756,232 - -1.3 3,756,242 - +0.5 3,756,535 + -0.7 3,756,685 + Xcc-8004.3891.1 0.12 +0.0 3,756,685 + Xcc-8004.3891.1 0.12 -1.6 3,756,754 + Xcc-8004.3891.1 0.15 -0.0 3,756,754 + Xcc-8004.3891.1 0.15 +0.1 3,756,755 - Xcc-8004.3891.1 0.15 +1.5 3,756,835 + Xcc-8004.3891.1 0.19 +0.8 3,756,835 + Xcc-8004.3891.1 0.19 +0.2 3,756,835 + Xcc-8004.3891.1 0.19 -0.2 3,756,844 + Xcc-8004.3891.1 0.19 -0.4 3,756,844 + Xcc-8004.3891.1 0.19 -1.7 3,756,845 - Xcc-8004.3891.1 0.19 +1.1 3,757,030 + Xcc-8004.3891.1 0.28 -0.3 3,757,031 - Xcc-8004.3891.1 0.28 -1.0 3,757,046 - Xcc-8004.3891.1 0.29 -0.2 3,757,127 - Xcc-8004.3891.1 0.33 +0.6 3,757,144 + Xcc-8004.3891.1 0.33 +1.3 3,757,144 + Xcc-8004.3891.1 0.33 +0.9 3,757,144 + Xcc-8004.3891.1 0.33 -1.8 3,757,144 + Xcc-8004.3891.1 0.33 +1.2 3,757,144 + Xcc-8004.3891.1 0.33 +0.2 3,757,144 + Xcc-8004.3891.1 0.33 -0.7 3,757,144 + Xcc-8004.3891.1 0.33 +0.6 3,757,145 - Xcc-8004.3891.1 0.33 -1.2 3,757,145 - Xcc-8004.3891.1 0.33 -2.4 3,757,145 - Xcc-8004.3891.1 0.33 +0.4 3,757,145 - Xcc-8004.3891.1 0.33 -0.8 3,757,150 + Xcc-8004.3891.1 0.34 -0.4 3,757,165 + Xcc-8004.3891.1 0.34 -0.1 3,757,165 + Xcc-8004.3891.1 0.34 -0.8 3,757,166 - Xcc-8004.3891.1 0.34 -0.0
Or see this region's nucleotide sequence