Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.3834.1

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X
3,710,428	+		Xcc-8004.3833.1	0.26	+0.4
3,710,429	-		Xcc-8004.3833.1	0.26	+0.5
3,710,429	-		Xcc-8004.3833.1	0.26	-1.0
3,710,803	+		Xcc-8004.3833.1	0.68	-2.6
3,710,804	-		Xcc-8004.3833.1	0.68	+0.5
3,710,804	-		Xcc-8004.3833.1	0.68	+0.2
3,710,857	+		Xcc-8004.3833.1	0.74	-1.0
3,710,857	+		Xcc-8004.3833.1	0.74	-0.5
3,710,857	+		Xcc-8004.3833.1	0.74	-0.0
3,710,858	-		Xcc-8004.3833.1	0.74	-0.3
3,710,858	-		Xcc-8004.3833.1	0.74	-1.4
3,710,858	-		Xcc-8004.3833.1	0.74	+0.4
3,710,858	-		Xcc-8004.3833.1	0.74	-1.6
3,710,860	+		Xcc-8004.3833.1	0.74	-0.8
3,710,860	+		Xcc-8004.3833.1	0.74	-0.5
3,710,860	+		Xcc-8004.3833.1	0.74	-1.1
3,710,860	+		Xcc-8004.3833.1	0.74	-0.0
3,710,860	+		Xcc-8004.3833.1	0.74	+0.5
3,710,860	+		Xcc-8004.3833.1	0.74	+0.7
3,710,860	+		Xcc-8004.3833.1	0.74	+1.5
3,710,860	+		Xcc-8004.3833.1	0.74	-1.0
3,710,861	-		Xcc-8004.3833.1	0.74	+0.7
3,710,861	-		Xcc-8004.3833.1	0.74	+0.7
3,710,941	+		Xcc-8004.3833.1	0.83	+0.0
3,710,941	+		Xcc-8004.3833.1	0.83	+0.6
3,710,942	-		Xcc-8004.3833.1	0.83	+1.1
3,710,942	-		Xcc-8004.3833.1	0.83	-0.9
3,711,053	+				-0.4
3,711,140	+				+0.8
3,711,140	+				-0.4
3,711,141	-				-0.4
3,711,141	-				-0.6
3,711,141	-				+0.7
3,711,141	-				-0.8
3,711,183	+				+0.8
3,711,204	+				-0.3
3,711,205	-				+0.4
3,711,221	+				+0.7
3,711,221	+				-0.3
3,711,221	+				-0.5
3,711,221	+				-2.3
3,711,222	-				+0.5
3,711,308	+				+2.3
3,711,309	-				+0.9
3,711,359	-				-0.7
3,711,462	+		Xcc-8004.3834.1	0.20	-0.9
3,711,462	+		Xcc-8004.3834.1	0.20	-1.0
3,711,492	+		Xcc-8004.3834.1	0.26	+0.2
3,711,627	+		Xcc-8004.3834.1	0.53	+2.5
3,711,627	+		Xcc-8004.3834.1	0.53	-0.3
3,711,627	+		Xcc-8004.3834.1	0.53	-1.0
3,711,627	+		Xcc-8004.3834.1	0.53	-0.3
3,711,628	-		Xcc-8004.3834.1	0.53	-0.9
3,711,628	-		Xcc-8004.3834.1	0.53	-0.7
3,711,628	-		Xcc-8004.3834.1	0.53	-0.8
3,711,918	-				-0.0
3,711,978	+				-1.3
3,711,978	+				+0.4
3,711,978	+				-0.4
3,711,978	+				-0.1
3,711,978	+				+0.0
3,711,978	+				+0.8
3,711,979	-				+0.5
3,711,979	-				+1.4
3,711,979	-				+0.7
3,711,979	-				+1.4
3,711,979	-				+0.8
3,711,982	+				-0.2
3,711,982	+				-2.7
3,711,982	+				-1.4
3,711,982	+				-0.7
3,711,982	+				-1.4
3,711,982	+				-0.6
3,711,982	+				-0.9
3,711,982	+				-1.4
3,711,983	-				-0.2
3,711,983	-				-0.4
3,711,983	-				+4.5
3,711,983	-				-0.0
3,711,993	-				+0.4
3,712,051	+				-0.7
3,712,051	+				+0.9
3,712,060	-				+0.9
3,712,114	+				+0.1
3,712,114	+				+1.0
3,712,115	-				-0.3
3,712,115	-				+1.4
3,712,116	+				-0.0
3,712,117	-				+0.6
3,712,129	+				-0.8
3,712,129	+				+0.0
3,712,129	+				-1.0
3,712,130	-				+0.3
3,712,130	-				+0.7
3,712,130	-				+1.5
3,712,166	-				-0.1
3,712,219	-				-0.5
3,712,219	-				-1.4
3,712,379	+		Xcc-8004.3837.1	0.12	-0.1
3,712,380	-		Xcc-8004.3837.1	0.12	+2.1
3,712,380	-		Xcc-8004.3837.1	0.12	-1.2
3,712,513	-		Xcc-8004.3837.1	0.23	+0.9
3,712,681	+		Xcc-8004.3837.1	0.37	+1.8
3,712,681	+		Xcc-8004.3837.1	0.37	+0.9
3,712,682	-		Xcc-8004.3837.1	0.37	-0.1
3,712,682	-		Xcc-8004.3837.1	0.37	-0.3
3,712,684	+		Xcc-8004.3837.1	0.37	-0.4
3,712,783	-		Xcc-8004.3837.1	0.45	+0.7
3,712,835	+		Xcc-8004.3837.1	0.49	-1.3
3,712,836	-		Xcc-8004.3837.1	0.50	-0.1
3,712,836	-		Xcc-8004.3837.1	0.50	-1.4