Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.3824.1 and Xcc-8004.3825.1 are separated by 101 nucleotides Xcc-8004.3825.1 and Xcc-8004.3827.1 are separated by 91 nucleotides Xcc-8004.3827.1 and Xcc-8004.3828.1 are separated by 250 nucleotides Xcc-8004.3828.1 and Xcc-8004.3829.1 are separated by 12 nucleotides
Xcc-8004.3824.1: Xcc-8004.3824.1 - Proposed peptidoglycan lipid II flippase MurJ, at 3,701,503 to 3,703,110
Xcc-8004.3824.1
Xcc-8004.3825.1: Xcc-8004.3825.1 - SSU ribosomal protein S20p, at 3,703,212 to 3,703,481
Xcc-8004.3825.1
Xcc-8004.3827.1: Xcc-8004.3827.1 - GTP-binding protein Obg, at 3,703,573 to 3,704,625
Xcc-8004.3827.1
Xcc-8004.3828.1: Xcc-8004.3828.1 - LSU ribosomal protein L27p, at 3,704,876 to 3,705,136
Xcc-8004.3828.1
Xcc-8004.3829.1: Xcc-8004.3829.1 - LSU ribosomal protein L21p, at 3,705,149 to 3,705,469
Xcc-8004.3829.1
Position (kb)
3703
3704
3705 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3703.479 kb on + strand at 3703.479 kb on + strand at 3703.480 kb on - strand at 3704.720 kb on - strand at 3704.720 kb on - strand at 3704.720 kb on - strand at 3704.770 kb on - strand at 3704.841 kb on - strand at 3704.841 kb on - strand at 3704.878 kb on - strand at 3705.539 kb on - strand at 3705.539 kb on - strand at 3705.547 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X remove 3,703,479 + +0.7 3,703,479 + -1.0 3,703,480 - +1.0 3,704,720 - -2.3 3,704,720 - +2.7 3,704,720 - +0.8 3,704,770 - -0.6 3,704,841 - +0.6 3,704,841 - +0.4 3,704,878 - -0.9 3,705,539 - +0.4 3,705,539 - -1.3 3,705,547 - +0.9
Or see this region's nucleotide sequence