Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.3730.1 and Xcc-8004.3731.1 are separated by 8 nucleotides Xcc-8004.3731.1 and Xcc-8004.3732.1 overlap by 1 nucleotides Xcc-8004.3732.1 and Xcc-8004.3733.1 are separated by 39 nucleotides
Xcc-8004.3730.1: Xcc-8004.3730.1 - Type III secretion inner membrane protein (YscU,SpaS,EscU,HrcU,SsaU, homologous to flagellar export components), at 3,605,566 to 3,606,639
Xcc-8004.3730.1
Xcc-8004.3731.1: Xcc-8004.3731.1 - Type III secretion inner membrane channel protein (LcrD,HrcV,EscV,SsaV), at 3,606,648 to 3,608,570
Xcc-8004.3731.1
Xcc-8004.3732.1: Xcc-8004.3732.1 - HpaP protein; Type III secretion protein (YscP), at 3,608,570 to 3,609,205
Xcc-8004.3732.1
Xcc-8004.3733.1: Xcc-8004.3733.1 - Type III secretion inner membrane protein (YscQ,homologous to flagellar export components), at 3,609,245 to 3,610,252
Xcc-8004.3733.1
Position (kb)
3606
3607
3608
3609 Strain fitness (log2 ratio)
-1
0
1
2 at 3605.707 kb on + strand, within Xcc-8004.3730.1 at 3605.708 kb on - strand, within Xcc-8004.3730.1 at 3606.638 kb on - strand at 3606.673 kb on - strand at 3606.756 kb on - strand at 3606.810 kb on + strand at 3606.811 kb on - strand at 3606.811 kb on - strand at 3606.811 kb on - strand at 3607.282 kb on + strand, within Xcc-8004.3731.1 at 3607.596 kb on - strand, within Xcc-8004.3731.1 at 3608.214 kb on + strand, within Xcc-8004.3731.1 at 3608.464 kb on - strand at 3608.508 kb on + strand at 3609.148 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X remove 3,605,707 + Xcc-8004.3730.1 0.13 +0.9 3,605,708 - Xcc-8004.3730.1 0.13 +2.5 3,606,638 - -1.0 3,606,673 - -0.7 3,606,756 - +0.6 3,606,810 + +0.2 3,606,811 - -0.8 3,606,811 - +2.0 3,606,811 - +0.4 3,607,282 + Xcc-8004.3731.1 0.33 -1.1 3,607,596 - Xcc-8004.3731.1 0.49 -1.6 3,608,214 + Xcc-8004.3731.1 0.81 +0.5 3,608,464 - +0.2 3,608,508 + -0.7 3,609,148 + +0.1
Or see this region's nucleotide sequence