Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.3721.1 and Xcc-8004.3722.1 overlap by 4 nucleotides Xcc-8004.3722.1 and Xcc-8004.3723.1 overlap by 8 nucleotides Xcc-8004.3723.1 and Xcc-8004.3724.1 overlap by 11 nucleotides Xcc-8004.3724.1 and Xcc-8004.3725.1 overlap by 16 nucleotides
Xcc-8004.3721.1: Xcc-8004.3721.1 - Type III secretion inner membrane protein (YscT,HrcT,SpaR,EscT,EpaR1,homologous to flagellar export components), at 3,599,736 to 3,600,566
Xcc-8004.3721.1
Xcc-8004.3722.1: Xcc-8004.3722.1 - HrpB7 protein, at 3,600,563 to 3,601,072
Xcc-8004.3722.1
Xcc-8004.3723.1: Xcc-8004.3723.1 - hypothetical protein, at 3,601,065 to 3,602,393
Xcc-8004.3723.1
Xcc-8004.3724.1: Xcc-8004.3724.1 - Type III secretion cytoplasmic protein (YscL), at 3,602,383 to 3,603,084
Xcc-8004.3724.1
Xcc-8004.3725.1: Xcc-8004.3725.1 - HrpB4 protein, at 3,603,069 to 3,603,698
Xcc-8004.3725.1
Position (kb) 3601
3602
3603 Strain fitness (log2 ratio) -2
-1
0
1 at 3600.279 kb on - strand, within Xcc-8004.3721.1 at 3600.406 kb on + strand, within Xcc-8004.3721.1 at 3600.407 kb on - strand, within Xcc-8004.3721.1 at 3600.691 kb on - strand, within Xcc-8004.3722.1 at 3601.111 kb on + strand at 3601.112 kb on - strand at 3601.678 kb on + strand, within Xcc-8004.3723.1 at 3601.678 kb on + strand, within Xcc-8004.3723.1 at 3601.678 kb on + strand, within Xcc-8004.3723.1 at 3601.679 kb on - strand, within Xcc-8004.3723.1 at 3602.321 kb on - strand at 3602.678 kb on + strand, within Xcc-8004.3724.1 at 3602.679 kb on - strand, within Xcc-8004.3724.1 at 3602.840 kb on + strand, within Xcc-8004.3724.1 at 3603.328 kb on + strand, within Xcc-8004.3725.1
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X remove 3,600,279 - Xcc-8004.3721.1 0.65 -1.5 3,600,406 + Xcc-8004.3721.1 0.81 +0.1 3,600,407 - Xcc-8004.3721.1 0.81 -1.2 3,600,691 - Xcc-8004.3722.1 0.25 +0.1 3,601,111 + -0.4 3,601,112 - +0.3 3,601,678 + Xcc-8004.3723.1 0.46 -0.9 3,601,678 + Xcc-8004.3723.1 0.46 -1.2 3,601,678 + Xcc-8004.3723.1 0.46 -2.2 3,601,679 - Xcc-8004.3723.1 0.46 -1.0 3,602,321 - -0.3 3,602,678 + Xcc-8004.3724.1 0.42 -0.1 3,602,679 - Xcc-8004.3724.1 0.42 -0.0 3,602,840 + Xcc-8004.3724.1 0.65 +0.4 3,603,328 + Xcc-8004.3725.1 0.41 +0.3
Or see this region's nucleotide sequence