Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.3641.1

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.3639.1 and Xcc-8004.3640.1 are separated by 13 nucleotidesXcc-8004.3640.1 and Xcc-8004.3641.1 are separated by 129 nucleotidesXcc-8004.3641.1 and Xcc-8004.3642.1 are separated by 163 nucleotidesXcc-8004.3642.1 and Xcc-8004.3643.1 are separated by 226 nucleotides Xcc-8004.3639.1: Xcc-8004.3639.1 - Small-conductance mechanosensitive channel, at 3,520,541 to 3,521,107 Xcc-8004.3639.1 Xcc-8004.3640.1: Xcc-8004.3640.1 - Hypothetical Zinc-finger containing protein, at 3,521,121 to 3,521,387 Xcc-8004.3640.1 Xcc-8004.3641.1: Xcc-8004.3641.1 - FIG01210445: hypothetical protein, at 3,521,517 to 3,521,780 Xcc-8004.3641.1 Xcc-8004.3642.1: Xcc-8004.3642.1 - FIG01211227: hypothetical protein, at 3,521,944 to 3,522,117 Xcc-8004.3642.1 Xcc-8004.3643.1: Xcc-8004.3643.1 - COG1451: Predicted metal-dependent hydrolase, at 3,522,344 to 3,522,844 Xcc-8004.3643.1 Position (kb) 3521 3522Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3520.550 kb on - strandat 3520.550 kb on - strandat 3520.550 kb on - strandat 3520.550 kb on - strandat 3520.682 kb on + strand, within Xcc-8004.3639.1at 3520.682 kb on + strand, within Xcc-8004.3639.1at 3520.682 kb on + strand, within Xcc-8004.3639.1at 3520.683 kb on - strand, within Xcc-8004.3639.1at 3520.683 kb on - strand, within Xcc-8004.3639.1at 3520.752 kb on + strand, within Xcc-8004.3639.1at 3520.752 kb on + strand, within Xcc-8004.3639.1at 3520.753 kb on - strand, within Xcc-8004.3639.1at 3520.753 kb on - strand, within Xcc-8004.3639.1at 3520.753 kb on - strand, within Xcc-8004.3639.1at 3520.753 kb on - strand, within Xcc-8004.3639.1at 3520.988 kb on + strand, within Xcc-8004.3639.1at 3520.988 kb on + strand, within Xcc-8004.3639.1at 3520.988 kb on + strand, within Xcc-8004.3639.1at 3520.988 kb on + strand, within Xcc-8004.3639.1at 3520.989 kb on - strand, within Xcc-8004.3639.1at 3520.989 kb on - strand, within Xcc-8004.3639.1at 3520.989 kb on - strand, within Xcc-8004.3639.1at 3520.989 kb on - strand, within Xcc-8004.3639.1at 3520.989 kb on - strand, within Xcc-8004.3639.1at 3520.989 kb on - strand, within Xcc-8004.3639.1at 3521.159 kb on - strand, within Xcc-8004.3640.1at 3521.159 kb on - strand, within Xcc-8004.3640.1at 3521.159 kb on - strand, within Xcc-8004.3640.1at 3521.159 kb on - strand, within Xcc-8004.3640.1at 3521.211 kb on + strand, within Xcc-8004.3640.1at 3521.211 kb on + strand, within Xcc-8004.3640.1at 3521.211 kb on + strand, within Xcc-8004.3640.1at 3521.211 kb on + strand, within Xcc-8004.3640.1at 3521.211 kb on + strand, within Xcc-8004.3640.1at 3521.211 kb on + strand, within Xcc-8004.3640.1at 3521.211 kb on + strand, within Xcc-8004.3640.1at 3521.211 kb on + strand, within Xcc-8004.3640.1at 3521.212 kb on - strand, within Xcc-8004.3640.1at 3521.212 kb on - strand, within Xcc-8004.3640.1at 3521.212 kb on - strand, within Xcc-8004.3640.1at 3521.212 kb on - strand, within Xcc-8004.3640.1at 3521.212 kb on - strand, within Xcc-8004.3640.1at 3521.212 kb on - strand, within Xcc-8004.3640.1at 3521.212 kb on - strand, within Xcc-8004.3640.1at 3521.212 kb on - strand, within Xcc-8004.3640.1at 3521.212 kb on - strand, within Xcc-8004.3640.1at 3521.212 kb on - strand, within Xcc-8004.3640.1at 3521.212 kb on - strand, within Xcc-8004.3640.1at 3521.212 kb on - strand, within Xcc-8004.3640.1at 3521.212 kb on - strand, within Xcc-8004.3640.1at 3521.212 kb on - strand, within Xcc-8004.3640.1at 3521.212 kb on - strand, within Xcc-8004.3640.1at 3521.212 kb on - strand, within Xcc-8004.3640.1at 3521.252 kb on + strand, within Xcc-8004.3640.1at 3521.252 kb on + strand, within Xcc-8004.3640.1at 3521.253 kb on - strand, within Xcc-8004.3640.1at 3521.253 kb on - strand, within Xcc-8004.3640.1at 3521.253 kb on - strand, within Xcc-8004.3640.1at 3521.253 kb on - strand, within Xcc-8004.3640.1at 3521.253 kb on - strand, within Xcc-8004.3640.1at 3521.480 kb on + strandat 3521.480 kb on + strandat 3521.480 kb on + strandat 3521.481 kb on - strandat 3521.481 kb on - strandat 3521.481 kb on - strandat 3521.481 kb on - strandat 3521.732 kb on + strand, within Xcc-8004.3641.1at 3521.784 kb on - strandat 3521.784 kb on - strandat 3521.784 kb on - strandat 3521.784 kb on - strandat 3521.784 kb on - strandat 3521.784 kb on - strandat 3521.891 kb on + strandat 3521.891 kb on + strandat 3521.891 kb on + strandat 3521.891 kb on + strandat 3521.892 kb on - strandat 3521.892 kb on - strandat 3521.892 kb on - strandat 3521.892 kb on - strandat 3521.897 kb on + strandat 3521.898 kb on - strandat 3521.898 kb on - strandat 3521.907 kb on + strandat 3521.907 kb on + strandat 3521.908 kb on - strandat 3522.099 kb on + strand, within Xcc-8004.3642.1at 3522.100 kb on - strandat 3522.100 kb on - strandat 3522.225 kb on + strandat 3522.226 kb on - strandat 3522.262 kb on + strandat 3522.262 kb on + strandat 3522.263 kb on - strandat 3522.263 kb on - strandat 3522.359 kb on + strandat 3522.360 kb on - strandat 3522.360 kb on - strandat 3522.360 kb on - strandat 3522.485 kb on + strand, within Xcc-8004.3643.1at 3522.485 kb on + strand, within Xcc-8004.3643.1at 3522.485 kb on + strand, within Xcc-8004.3643.1at 3522.485 kb on + strand, within Xcc-8004.3643.1at 3522.485 kb on + strand, within Xcc-8004.3643.1at 3522.485 kb on + strand, within Xcc-8004.3643.1at 3522.486 kb on - strand, within Xcc-8004.3643.1at 3522.486 kb on - strand, within Xcc-8004.3643.1at 3522.486 kb on - strand, within Xcc-8004.3643.1at 3522.486 kb on - strand, within Xcc-8004.3643.1at 3522.491 kb on + strand, within Xcc-8004.3643.1at 3522.491 kb on + strand, within Xcc-8004.3643.1at 3522.492 kb on - strand, within Xcc-8004.3643.1at 3522.492 kb on - strand, within Xcc-8004.3643.1at 3522.492 kb on - strand, within Xcc-8004.3643.1at 3522.501 kb on - strand, within Xcc-8004.3643.1at 3522.515 kb on + strand, within Xcc-8004.3643.1at 3522.515 kb on + strand, within Xcc-8004.3643.1at 3522.515 kb on + strand, within Xcc-8004.3643.1at 3522.515 kb on + strand, within Xcc-8004.3643.1at 3522.515 kb on + strand, within Xcc-8004.3643.1at 3522.516 kb on - strand, within Xcc-8004.3643.1at 3522.516 kb on - strand, within Xcc-8004.3643.1at 3522.516 kb on - strand, within Xcc-8004.3643.1at 3522.516 kb on - strand, within Xcc-8004.3643.1at 3522.516 kb on - strand, within Xcc-8004.3643.1at 3522.551 kb on + strand, within Xcc-8004.3643.1at 3522.551 kb on + strand, within Xcc-8004.3643.1at 3522.551 kb on + strand, within Xcc-8004.3643.1at 3522.552 kb on - strand, within Xcc-8004.3643.1at 3522.552 kb on - strand, within Xcc-8004.3643.1at 3522.552 kb on - strand, within Xcc-8004.3643.1at 3522.552 kb on - strand, within Xcc-8004.3643.1at 3522.749 kb on + strand, within Xcc-8004.3643.1at 3522.749 kb on + strand, within Xcc-8004.3643.1at 3522.749 kb on + strand, within Xcc-8004.3643.1at 3522.749 kb on + strand, within Xcc-8004.3643.1at 3522.749 kb on + strand, within Xcc-8004.3643.1at 3522.749 kb on + strand, within Xcc-8004.3643.1at 3522.750 kb on - strand, within Xcc-8004.3643.1at 3522.750 kb on - strand, within Xcc-8004.3643.1at 3522.779 kb on + strand, within Xcc-8004.3643.1at 3522.780 kb on - strand, within Xcc-8004.3643.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X
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3,520,550 - +1.5
3,520,550 - -0.9
3,520,550 - +2.5
3,520,550 - -1.1
3,520,682 + Xcc-8004.3639.1 0.25 +1.0
3,520,682 + Xcc-8004.3639.1 0.25 -0.1
3,520,682 + Xcc-8004.3639.1 0.25 -1.1
3,520,683 - Xcc-8004.3639.1 0.25 +1.3
3,520,683 - Xcc-8004.3639.1 0.25 +1.1
3,520,752 + Xcc-8004.3639.1 0.37 -1.1
3,520,752 + Xcc-8004.3639.1 0.37 +1.3
3,520,753 - Xcc-8004.3639.1 0.37 +1.3
3,520,753 - Xcc-8004.3639.1 0.37 +0.5
3,520,753 - Xcc-8004.3639.1 0.37 -0.2
3,520,753 - Xcc-8004.3639.1 0.37 -0.1
3,520,988 + Xcc-8004.3639.1 0.79 +1.0
3,520,988 + Xcc-8004.3639.1 0.79 +1.2
3,520,988 + Xcc-8004.3639.1 0.79 -0.1
3,520,988 + Xcc-8004.3639.1 0.79 -1.2
3,520,989 - Xcc-8004.3639.1 0.79 -0.4
3,520,989 - Xcc-8004.3639.1 0.79 +0.9
3,520,989 - Xcc-8004.3639.1 0.79 -0.3
3,520,989 - Xcc-8004.3639.1 0.79 -0.1
3,520,989 - Xcc-8004.3639.1 0.79 +0.8
3,520,989 - Xcc-8004.3639.1 0.79 +0.5
3,521,159 - Xcc-8004.3640.1 0.14 +0.4
3,521,159 - Xcc-8004.3640.1 0.14 -1.2
3,521,159 - Xcc-8004.3640.1 0.14 -0.0
3,521,159 - Xcc-8004.3640.1 0.14 +2.2
3,521,211 + Xcc-8004.3640.1 0.34 -1.0
3,521,211 + Xcc-8004.3640.1 0.34 +0.8
3,521,211 + Xcc-8004.3640.1 0.34 -0.9
3,521,211 + Xcc-8004.3640.1 0.34 -1.4
3,521,211 + Xcc-8004.3640.1 0.34 +1.1
3,521,211 + Xcc-8004.3640.1 0.34 -0.7
3,521,211 + Xcc-8004.3640.1 0.34 +1.3
3,521,211 + Xcc-8004.3640.1 0.34 -0.2
3,521,212 - Xcc-8004.3640.1 0.34 -1.3
3,521,212 - Xcc-8004.3640.1 0.34 -0.6
3,521,212 - Xcc-8004.3640.1 0.34 -0.5
3,521,212 - Xcc-8004.3640.1 0.34 -1.2
3,521,212 - Xcc-8004.3640.1 0.34 -0.3
3,521,212 - Xcc-8004.3640.1 0.34 +0.0
3,521,212 - Xcc-8004.3640.1 0.34 -0.2
3,521,212 - Xcc-8004.3640.1 0.34 -0.7
3,521,212 - Xcc-8004.3640.1 0.34 -1.4
3,521,212 - Xcc-8004.3640.1 0.34 -0.8
3,521,212 - Xcc-8004.3640.1 0.34 -3.0
3,521,212 - Xcc-8004.3640.1 0.34 +0.7
3,521,212 - Xcc-8004.3640.1 0.34 -1.2
3,521,212 - Xcc-8004.3640.1 0.34 +1.2
3,521,212 - Xcc-8004.3640.1 0.34 -0.7
3,521,212 - Xcc-8004.3640.1 0.34 -0.0
3,521,252 + Xcc-8004.3640.1 0.49 +0.0
3,521,252 + Xcc-8004.3640.1 0.49 -0.3
3,521,253 - Xcc-8004.3640.1 0.49 -0.1
3,521,253 - Xcc-8004.3640.1 0.49 +0.0
3,521,253 - Xcc-8004.3640.1 0.49 +1.1
3,521,253 - Xcc-8004.3640.1 0.49 +0.6
3,521,253 - Xcc-8004.3640.1 0.49 -1.8
3,521,480 + -1.4
3,521,480 + +0.6
3,521,480 + +0.3
3,521,481 - +0.2
3,521,481 - -1.9
3,521,481 - +0.0
3,521,481 - +0.6
3,521,732 + Xcc-8004.3641.1 0.81 -0.5
3,521,784 - -0.4
3,521,784 - +1.4
3,521,784 - +0.3
3,521,784 - +1.5
3,521,784 - -0.6
3,521,784 - +0.6
3,521,891 + +1.4
3,521,891 + -0.7
3,521,891 + -0.9
3,521,891 + -0.3
3,521,892 - +0.4
3,521,892 - -2.5
3,521,892 - -1.1
3,521,892 - +1.1
3,521,897 + +0.7
3,521,898 - -0.0
3,521,898 - -1.1
3,521,907 + +0.9
3,521,907 + +0.3
3,521,908 - +0.1
3,522,099 + Xcc-8004.3642.1 0.89 +1.3
3,522,100 - -0.2
3,522,100 - +1.0
3,522,225 + +1.3
3,522,226 - -0.8
3,522,262 + -0.1
3,522,262 + +0.1
3,522,263 - -0.1
3,522,263 - +0.7
3,522,359 + -0.8
3,522,360 - +0.9
3,522,360 - -1.6
3,522,360 - +1.3
3,522,485 + Xcc-8004.3643.1 0.28 -0.4
3,522,485 + Xcc-8004.3643.1 0.28 +0.2
3,522,485 + Xcc-8004.3643.1 0.28 -0.4
3,522,485 + Xcc-8004.3643.1 0.28 +0.6
3,522,485 + Xcc-8004.3643.1 0.28 +1.4
3,522,485 + Xcc-8004.3643.1 0.28 +0.2
3,522,486 - Xcc-8004.3643.1 0.28 -1.0
3,522,486 - Xcc-8004.3643.1 0.28 -1.6
3,522,486 - Xcc-8004.3643.1 0.28 +0.2
3,522,486 - Xcc-8004.3643.1 0.28 -0.1
3,522,491 + Xcc-8004.3643.1 0.29 -1.2
3,522,491 + Xcc-8004.3643.1 0.29 -1.5
3,522,492 - Xcc-8004.3643.1 0.30 +1.3
3,522,492 - Xcc-8004.3643.1 0.30 -1.7
3,522,492 - Xcc-8004.3643.1 0.30 +1.4
3,522,501 - Xcc-8004.3643.1 0.31 +0.8
3,522,515 + Xcc-8004.3643.1 0.34 +1.0
3,522,515 + Xcc-8004.3643.1 0.34 +0.4
3,522,515 + Xcc-8004.3643.1 0.34 +0.3
3,522,515 + Xcc-8004.3643.1 0.34 +2.1
3,522,515 + Xcc-8004.3643.1 0.34 +0.3
3,522,516 - Xcc-8004.3643.1 0.34 -0.1
3,522,516 - Xcc-8004.3643.1 0.34 +0.7
3,522,516 - Xcc-8004.3643.1 0.34 +0.4
3,522,516 - Xcc-8004.3643.1 0.34 -0.5
3,522,516 - Xcc-8004.3643.1 0.34 -0.4
3,522,551 + Xcc-8004.3643.1 0.41 -1.7
3,522,551 + Xcc-8004.3643.1 0.41 -0.0
3,522,551 + Xcc-8004.3643.1 0.41 -0.2
3,522,552 - Xcc-8004.3643.1 0.42 -0.2
3,522,552 - Xcc-8004.3643.1 0.42 -2.2
3,522,552 - Xcc-8004.3643.1 0.42 -1.1
3,522,552 - Xcc-8004.3643.1 0.42 -1.4
3,522,749 + Xcc-8004.3643.1 0.81 -0.5
3,522,749 + Xcc-8004.3643.1 0.81 -0.8
3,522,749 + Xcc-8004.3643.1 0.81 -0.8
3,522,749 + Xcc-8004.3643.1 0.81 -1.1
3,522,749 + Xcc-8004.3643.1 0.81 +0.9
3,522,749 + Xcc-8004.3643.1 0.81 -0.9
3,522,750 - Xcc-8004.3643.1 0.81 -1.3
3,522,750 - Xcc-8004.3643.1 0.81 +0.8
3,522,779 + Xcc-8004.3643.1 0.87 +0.7
3,522,780 - Xcc-8004.3643.1 0.87 -0.8

Or see this region's nucleotide sequence