Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.3543.1

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.3542.1 and Xcc-8004.3543.1 are separated by 20 nucleotidesXcc-8004.3543.1 and Xcc-8004.3544.1 overlap by 4 nucleotides Xcc-8004.3542.1: Xcc-8004.3542.1 - 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase (EC 2.3.1.117), at 3,432,881 to 3,434,053 Xcc-8004.3542.1 Xcc-8004.3543.1: Xcc-8004.3543.1 - [Protein-PII] uridylyltransferase (EC 2.7.7.59), at 3,434,074 to 3,436,683 Xcc-8004.3543.1 Xcc-8004.3544.1: Xcc-8004.3544.1 - Methionine aminopeptidase (EC 3.4.11.18), at 3,436,680 to 3,437,603 Xcc-8004.3544.1 Position (kb) 3434 3435 3436 3437Strain fitness (log2 ratio) -2 -1 0 1at 3437.652 kb on + strandat 3437.652 kb on + strandat 3437.653 kb on - strandat 3437.653 kb on - strandat 3437.653 kb on - strandat 3437.671 kb on + strandat 3437.672 kb on - strandat 3437.672 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X
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3,437,652 + +0.9
3,437,652 + +0.4
3,437,653 - -2.0
3,437,653 - +0.3
3,437,653 - -0.9
3,437,671 + -0.0
3,437,672 - -1.3
3,437,672 - -1.4

Or see this region's nucleotide sequence