Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.3498.1

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X
3,386,473	-				-0.4
3,386,473	-				+0.9
3,386,549	-				-0.5
3,386,647	-		Xcc-8004.3496.1	0.16	-0.6
3,386,655	+		Xcc-8004.3496.1	0.17	+0.0
3,386,674	-		Xcc-8004.3496.1	0.21	+0.9
3,386,934	+		Xcc-8004.3496.1	0.75	+0.6
3,386,934	+		Xcc-8004.3496.1	0.75	-0.2
3,386,934	+		Xcc-8004.3496.1	0.75	-1.5
3,386,934	+		Xcc-8004.3496.1	0.75	+1.5
3,386,934	+		Xcc-8004.3496.1	0.75	+0.9
3,386,934	+		Xcc-8004.3496.1	0.75	-1.3
3,386,934	+		Xcc-8004.3496.1	0.75	+0.7
3,386,934	+		Xcc-8004.3496.1	0.75	-1.5
3,386,935	-		Xcc-8004.3496.1	0.75	+0.6
3,386,935	-		Xcc-8004.3496.1	0.75	+0.1
3,386,935	-		Xcc-8004.3496.1	0.75	+0.3
3,386,935	-		Xcc-8004.3496.1	0.75	+0.6
3,387,015	+				-0.7
3,387,015	+				+0.1
3,387,015	+				+1.7
3,387,015	+				-0.7
3,387,015	+				+0.7
3,387,015	+				-0.0
3,387,015	+				+0.5
3,387,015	+				-0.7
3,387,015	+				-1.3
3,387,015	+				-0.1
3,387,016	-				+2.1
3,387,016	-				-0.1
3,387,016	-				-0.6
3,387,016	-				+1.5
3,387,016	-				-1.4
3,387,016	-				-0.3
3,387,016	-				+0.1
3,387,016	-				-0.6
3,387,075	-				+0.1
3,387,184	-		Xcc-8004.3498.1	0.25	-0.5
3,387,184	-		Xcc-8004.3498.1	0.25	-0.9
3,387,361	-				-0.3
3,387,361	-				+0.3
3,387,372	+				+1.3
3,387,372	+				-0.1
3,387,372	+				-0.2
3,387,372	+				-1.0
3,387,373	-				-1.4
3,387,373	-				+1.0
3,387,415	+				-0.9
3,387,415	+				-1.8
3,387,415	+				+0.5
3,387,415	+				-2.0
3,387,416	-				+0.1
3,387,416	-				-0.5
3,387,416	-				-0.3
3,387,416	-				+1.3
3,387,416	-				-0.4
3,387,416	-				+0.8
3,387,416	-				-0.3
3,387,425	+				-0.9
3,387,425	+				-1.5
3,387,425	+				+1.0
3,387,425	+				+1.0
3,387,425	+				+1.1
3,387,425	+				+0.5
3,387,425	+				+2.1
3,387,442	+				+0.5
3,387,442	+				+0.5
3,387,442	+				-0.0
3,387,442	+				+1.4
3,387,442	+				-1.6
3,387,443	-				+0.7
3,387,443	-				+0.8
3,387,443	-				-0.8
3,387,497	+				+0.0
3,387,497	+				-0.5
3,387,555	-				+0.5
3,387,592	+				-1.5
3,387,592	+				+0.2
3,387,593	-				+0.7
3,387,593	-				+0.1
3,387,595	+				-0.6
3,387,595	+				-0.3
3,387,595	+				-0.8
3,387,595	+				+0.6
3,387,595	+				+0.2
3,387,595	+				-0.1
3,387,595	+				+0.5
3,387,596	-				+0.4
3,387,596	-				-2.0
3,387,596	-				+0.4
3,387,596	-				+0.2
3,387,596	-				-0.3
3,387,596	-				+1.0
3,387,596	-				-0.6
3,387,596	-				-0.3
3,387,596	-				-1.2
3,387,793	+		Xcc-8004.3501.1	0.45	-0.1
3,387,793	+		Xcc-8004.3501.1	0.45	+0.0
3,387,794	-		Xcc-8004.3501.1	0.45	+0.6
3,387,794	-		Xcc-8004.3501.1	0.45	+0.1
3,387,794	-		Xcc-8004.3501.1	0.45	-0.5
3,387,794	-		Xcc-8004.3501.1	0.45	+0.4
3,387,922	+		Xcc-8004.3501.1	0.72	-0.5
3,387,923	-		Xcc-8004.3501.1	0.72	+1.3
3,387,923	-		Xcc-8004.3501.1	0.72	-0.9
3,387,923	-		Xcc-8004.3501.1	0.72	-0.4
3,387,923	-		Xcc-8004.3501.1	0.72	+1.0
3,387,923	-		Xcc-8004.3501.1	0.72	+0.7
3,387,986	+		Xcc-8004.3501.1	0.85	+0.8
3,387,986	+		Xcc-8004.3501.1	0.85	-1.9
3,387,986	+		Xcc-8004.3501.1	0.85	-0.1
3,387,986	+		Xcc-8004.3501.1	0.85	-0.0
3,387,986	+		Xcc-8004.3501.1	0.85	-0.6
3,387,986	+		Xcc-8004.3501.1	0.85	+1.9
3,387,987	-		Xcc-8004.3501.1	0.85	+0.4
3,387,987	-		Xcc-8004.3501.1	0.85	+0.9
3,387,987	-		Xcc-8004.3501.1	0.85	-1.1
3,388,135	+				+0.1
3,388,135	+				+0.6
3,388,135	+				+0.3
3,388,135	+				+1.3
3,388,135	+				+1.4
3,388,136	-				-0.2
3,388,136	-				-0.7
3,388,136	-				+1.0
3,388,136	-				+0.2
3,388,147	+				-1.7
3,388,147	+				-2.4
3,388,148	-				+1.2
3,388,148	-				+1.0
3,388,148	-				+0.1
3,388,148	-				+0.2
3,388,158	+				-0.6
3,388,158	+				-0.6
3,388,158	+				-0.5
3,388,158	+				-0.3
3,388,175	+				-0.5
3,388,251	+				-0.4
3,388,252	-				+0.6
3,388,252	-				-0.9
3,388,252	-				+0.6
3,388,252	-				+0.0
3,388,330	+				-0.8
3,388,330	+				-1.8
3,388,331	-				+0.7
3,388,331	-				+1.7
3,388,331	-				+0.9