Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.3451.1

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.3449.1 and Xcc-8004.3450.1 are separated by 3 nucleotidesXcc-8004.3450.1 and Xcc-8004.3451.1 overlap by 4 nucleotidesXcc-8004.3451.1 and Xcc-8004.3452.1 are separated by 201 nucleotides Xcc-8004.3449.1: Xcc-8004.3449.1 - DNA primase (EC 2.7.7.-), at 3,334,900 to 3,338,463 Xcc-8004.3449.1 Xcc-8004.3450.1: Xcc-8004.3450.1 - hypothetical protein, at 3,338,467 to 3,338,847 Xcc-8004.3450.1 Xcc-8004.3451.1: Xcc-8004.3451.1 - hypothetical protein, at 3,338,844 to 3,339,032 Xcc-8004.3451.1 Xcc-8004.3452.1: Xcc-8004.3452.1 - phage-related integrase, at 3,339,234 to 3,340,382 Xcc-8004.3452.1 Position (kb) 3338 3339 3340Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3337.928 kb on + strand, within Xcc-8004.3449.1at 3337.955 kb on + strand, within Xcc-8004.3449.1at 3337.955 kb on + strand, within Xcc-8004.3449.1at 3337.955 kb on + strand, within Xcc-8004.3449.1at 3337.955 kb on + strand, within Xcc-8004.3449.1at 3337.956 kb on - strand, within Xcc-8004.3449.1at 3337.998 kb on + strand, within Xcc-8004.3449.1at 3337.999 kb on - strand, within Xcc-8004.3449.1at 3338.053 kb on + strand, within Xcc-8004.3449.1at 3338.054 kb on - strand, within Xcc-8004.3449.1at 3338.160 kb on + strandat 3338.189 kb on + strandat 3338.190 kb on - strandat 3338.212 kb on - strandat 3338.212 kb on - strandat 3338.226 kb on + strandat 3338.226 kb on + strandat 3338.227 kb on - strandat 3338.318 kb on + strandat 3338.318 kb on + strandat 3338.543 kb on - strand, within Xcc-8004.3450.1at 3338.572 kb on + strand, within Xcc-8004.3450.1at 3338.572 kb on + strand, within Xcc-8004.3450.1at 3338.573 kb on - strand, within Xcc-8004.3450.1at 3338.573 kb on - strand, within Xcc-8004.3450.1at 3338.573 kb on - strand, within Xcc-8004.3450.1at 3338.585 kb on + strand, within Xcc-8004.3450.1at 3338.647 kb on + strand, within Xcc-8004.3450.1at 3338.647 kb on + strand, within Xcc-8004.3450.1at 3338.647 kb on + strand, within Xcc-8004.3450.1at 3338.647 kb on + strand, within Xcc-8004.3450.1at 3338.648 kb on - strand, within Xcc-8004.3450.1at 3338.648 kb on - strand, within Xcc-8004.3450.1at 3338.651 kb on + strand, within Xcc-8004.3450.1at 3338.651 kb on + strand, within Xcc-8004.3450.1at 3338.652 kb on - strand, within Xcc-8004.3450.1at 3338.652 kb on - strand, within Xcc-8004.3450.1at 3338.654 kb on + strand, within Xcc-8004.3450.1at 3338.655 kb on - strand, within Xcc-8004.3450.1at 3338.658 kb on + strand, within Xcc-8004.3450.1at 3338.658 kb on + strand, within Xcc-8004.3450.1at 3338.658 kb on + strand, within Xcc-8004.3450.1at 3338.659 kb on - strand, within Xcc-8004.3450.1at 3338.659 kb on - strand, within Xcc-8004.3450.1at 3338.659 kb on - strand, within Xcc-8004.3450.1at 3338.659 kb on - strand, within Xcc-8004.3450.1at 3338.659 kb on - strand, within Xcc-8004.3450.1at 3338.659 kb on - strand, within Xcc-8004.3450.1at 3338.700 kb on + strand, within Xcc-8004.3450.1at 3338.700 kb on + strand, within Xcc-8004.3450.1at 3338.701 kb on - strand, within Xcc-8004.3450.1at 3338.701 kb on - strand, within Xcc-8004.3450.1at 3338.702 kb on + strand, within Xcc-8004.3450.1at 3338.702 kb on + strand, within Xcc-8004.3450.1at 3338.702 kb on + strand, within Xcc-8004.3450.1at 3338.702 kb on + strand, within Xcc-8004.3450.1at 3338.703 kb on - strand, within Xcc-8004.3450.1at 3338.703 kb on - strand, within Xcc-8004.3450.1at 3338.927 kb on + strand, within Xcc-8004.3451.1at 3338.928 kb on - strand, within Xcc-8004.3451.1at 3338.932 kb on - strand, within Xcc-8004.3451.1at 3338.981 kb on + strand, within Xcc-8004.3451.1at 3338.986 kb on - strand, within Xcc-8004.3451.1at 3339.050 kb on + strandat 3339.050 kb on + strandat 3339.051 kb on - strandat 3339.051 kb on - strandat 3339.064 kb on + strandat 3339.064 kb on + strandat 3339.064 kb on + strandat 3339.065 kb on - strandat 3339.100 kb on + strandat 3339.100 kb on + strandat 3339.100 kb on + strandat 3339.101 kb on - strandat 3339.155 kb on - strandat 3339.162 kb on + strandat 3339.162 kb on + strandat 3339.199 kb on - strandat 3339.201 kb on - strandat 3339.201 kb on - strandat 3339.217 kb on - strandat 3339.217 kb on - strandat 3339.238 kb on - strandat 3339.292 kb on + strandat 3339.292 kb on + strandat 3339.292 kb on + strandat 3339.293 kb on - strandat 3339.293 kb on - strandat 3339.293 kb on - strandat 3339.327 kb on + strandat 3339.342 kb on + strandat 3339.390 kb on - strand, within Xcc-8004.3452.1at 3339.390 kb on - strand, within Xcc-8004.3452.1at 3339.390 kb on - strand, within Xcc-8004.3452.1at 3339.390 kb on - strand, within Xcc-8004.3452.1at 3339.390 kb on - strand, within Xcc-8004.3452.1at 3339.397 kb on + strand, within Xcc-8004.3452.1at 3339.397 kb on + strand, within Xcc-8004.3452.1at 3339.397 kb on + strand, within Xcc-8004.3452.1at 3339.397 kb on + strand, within Xcc-8004.3452.1at 3339.397 kb on + strand, within Xcc-8004.3452.1at 3339.398 kb on - strand, within Xcc-8004.3452.1at 3339.398 kb on - strand, within Xcc-8004.3452.1at 3339.398 kb on - strand, within Xcc-8004.3452.1at 3339.398 kb on - strand, within Xcc-8004.3452.1at 3339.398 kb on - strand, within Xcc-8004.3452.1at 3339.399 kb on + strand, within Xcc-8004.3452.1at 3339.399 kb on + strand, within Xcc-8004.3452.1at 3339.399 kb on + strand, within Xcc-8004.3452.1at 3339.399 kb on + strand, within Xcc-8004.3452.1at 3339.399 kb on + strand, within Xcc-8004.3452.1at 3339.399 kb on + strand, within Xcc-8004.3452.1at 3339.399 kb on + strand, within Xcc-8004.3452.1at 3339.399 kb on + strand, within Xcc-8004.3452.1at 3339.400 kb on - strand, within Xcc-8004.3452.1at 3339.400 kb on - strand, within Xcc-8004.3452.1at 3339.400 kb on - strand, within Xcc-8004.3452.1at 3339.400 kb on - strand, within Xcc-8004.3452.1at 3339.444 kb on + strand, within Xcc-8004.3452.1at 3339.444 kb on + strand, within Xcc-8004.3452.1at 3339.525 kb on + strand, within Xcc-8004.3452.1at 3339.531 kb on - strand, within Xcc-8004.3452.1at 3339.745 kb on + strand, within Xcc-8004.3452.1at 3339.746 kb on - strand, within Xcc-8004.3452.1at 3339.746 kb on - strand, within Xcc-8004.3452.1at 3339.746 kb on - strand, within Xcc-8004.3452.1at 3339.749 kb on + strand, within Xcc-8004.3452.1at 3339.749 kb on + strand, within Xcc-8004.3452.1at 3339.749 kb on + strand, within Xcc-8004.3452.1at 3339.749 kb on + strand, within Xcc-8004.3452.1at 3339.750 kb on - strand, within Xcc-8004.3452.1at 3339.750 kb on - strand, within Xcc-8004.3452.1at 3339.750 kb on - strand, within Xcc-8004.3452.1at 3339.758 kb on + strand, within Xcc-8004.3452.1at 3339.758 kb on + strand, within Xcc-8004.3452.1at 3339.773 kb on + strand, within Xcc-8004.3452.1at 3339.773 kb on + strand, within Xcc-8004.3452.1at 3339.773 kb on + strand, within Xcc-8004.3452.1at 3339.773 kb on + strand, within Xcc-8004.3452.1at 3339.773 kb on + strand, within Xcc-8004.3452.1at 3339.774 kb on - strand, within Xcc-8004.3452.1at 3339.783 kb on + strand, within Xcc-8004.3452.1at 3339.799 kb on - strand, within Xcc-8004.3452.1at 3339.801 kb on + strand, within Xcc-8004.3452.1at 3339.802 kb on - strand, within Xcc-8004.3452.1at 3339.844 kb on - strand, within Xcc-8004.3452.1at 3339.844 kb on - strand, within Xcc-8004.3452.1at 3339.951 kb on + strand, within Xcc-8004.3452.1at 3339.951 kb on + strand, within Xcc-8004.3452.1at 3339.951 kb on + strand, within Xcc-8004.3452.1at 3339.951 kb on + strand, within Xcc-8004.3452.1at 3339.951 kb on + strand, within Xcc-8004.3452.1at 3339.951 kb on + strand, within Xcc-8004.3452.1at 3339.951 kb on + strand, within Xcc-8004.3452.1at 3339.952 kb on - strand, within Xcc-8004.3452.1at 3339.952 kb on - strand, within Xcc-8004.3452.1at 3339.952 kb on - strand, within Xcc-8004.3452.1at 3339.952 kb on - strand, within Xcc-8004.3452.1at 3340.003 kb on + strand, within Xcc-8004.3452.1at 3340.003 kb on + strand, within Xcc-8004.3452.1at 3340.004 kb on - strand, within Xcc-8004.3452.1at 3340.004 kb on - strand, within Xcc-8004.3452.1at 3340.025 kb on + strand, within Xcc-8004.3452.1at 3340.025 kb on + strand, within Xcc-8004.3452.1at 3340.025 kb on + strand, within Xcc-8004.3452.1at 3340.025 kb on + strand, within Xcc-8004.3452.1at 3340.025 kb on + strand, within Xcc-8004.3452.1at 3340.026 kb on - strand, within Xcc-8004.3452.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X
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3,337,928 + Xcc-8004.3449.1 0.85 +0.3
3,337,955 + Xcc-8004.3449.1 0.86 +1.0
3,337,955 + Xcc-8004.3449.1 0.86 +0.7
3,337,955 + Xcc-8004.3449.1 0.86 -0.9
3,337,955 + Xcc-8004.3449.1 0.86 +0.9
3,337,956 - Xcc-8004.3449.1 0.86 +0.6
3,337,998 + Xcc-8004.3449.1 0.87 +1.2
3,337,999 - Xcc-8004.3449.1 0.87 -0.4
3,338,053 + Xcc-8004.3449.1 0.88 -0.1
3,338,054 - Xcc-8004.3449.1 0.88 -0.4
3,338,160 + -0.7
3,338,189 + +0.2
3,338,190 - +1.1
3,338,212 - -1.0
3,338,212 - -0.6
3,338,226 + -1.2
3,338,226 + -0.1
3,338,227 - -0.5
3,338,318 + +0.9
3,338,318 + -1.2
3,338,543 - Xcc-8004.3450.1 0.20 +0.1
3,338,572 + Xcc-8004.3450.1 0.28 -0.1
3,338,572 + Xcc-8004.3450.1 0.28 +0.9
3,338,573 - Xcc-8004.3450.1 0.28 +0.1
3,338,573 - Xcc-8004.3450.1 0.28 -0.2
3,338,573 - Xcc-8004.3450.1 0.28 +0.7
3,338,585 + Xcc-8004.3450.1 0.31 +0.9
3,338,647 + Xcc-8004.3450.1 0.47 +0.9
3,338,647 + Xcc-8004.3450.1 0.47 +2.5
3,338,647 + Xcc-8004.3450.1 0.47 -0.1
3,338,647 + Xcc-8004.3450.1 0.47 -0.7
3,338,648 - Xcc-8004.3450.1 0.48 -0.4
3,338,648 - Xcc-8004.3450.1 0.48 -1.0
3,338,651 + Xcc-8004.3450.1 0.48 -0.5
3,338,651 + Xcc-8004.3450.1 0.48 -0.5
3,338,652 - Xcc-8004.3450.1 0.49 +0.8
3,338,652 - Xcc-8004.3450.1 0.49 +0.3
3,338,654 + Xcc-8004.3450.1 0.49 -0.9
3,338,655 - Xcc-8004.3450.1 0.49 -0.1
3,338,658 + Xcc-8004.3450.1 0.50 -0.6
3,338,658 + Xcc-8004.3450.1 0.50 -3.2
3,338,658 + Xcc-8004.3450.1 0.50 +0.6
3,338,659 - Xcc-8004.3450.1 0.50 -1.0
3,338,659 - Xcc-8004.3450.1 0.50 -0.4
3,338,659 - Xcc-8004.3450.1 0.50 -1.7
3,338,659 - Xcc-8004.3450.1 0.50 -0.6
3,338,659 - Xcc-8004.3450.1 0.50 -0.7
3,338,659 - Xcc-8004.3450.1 0.50 -0.2
3,338,700 + Xcc-8004.3450.1 0.61 +0.0
3,338,700 + Xcc-8004.3450.1 0.61 +0.9
3,338,701 - Xcc-8004.3450.1 0.61 -0.2
3,338,701 - Xcc-8004.3450.1 0.61 -0.2
3,338,702 + Xcc-8004.3450.1 0.62 +0.3
3,338,702 + Xcc-8004.3450.1 0.62 -1.2
3,338,702 + Xcc-8004.3450.1 0.62 -0.5
3,338,702 + Xcc-8004.3450.1 0.62 -0.8
3,338,703 - Xcc-8004.3450.1 0.62 -0.0
3,338,703 - Xcc-8004.3450.1 0.62 -0.6
3,338,927 + Xcc-8004.3451.1 0.44 -0.4
3,338,928 - Xcc-8004.3451.1 0.44 +0.3
3,338,932 - Xcc-8004.3451.1 0.47 -0.3
3,338,981 + Xcc-8004.3451.1 0.72 -0.9
3,338,986 - Xcc-8004.3451.1 0.75 -0.9
3,339,050 + -0.9
3,339,050 + +0.2
3,339,051 - -0.3
3,339,051 - +0.8
3,339,064 + -2.7
3,339,064 + -0.5
3,339,064 + +0.1
3,339,065 - -0.8
3,339,100 + -0.4
3,339,100 + -0.4
3,339,100 + -1.1
3,339,101 - +0.2
3,339,155 - -0.5
3,339,162 + -2.0
3,339,162 + +0.3
3,339,199 - +0.3
3,339,201 - -0.5
3,339,201 - +0.1
3,339,217 - -0.3
3,339,217 - +1.1
3,339,238 - +0.8
3,339,292 + +0.9
3,339,292 + +0.5
3,339,292 + -1.7
3,339,293 - +0.1
3,339,293 - +0.4
3,339,293 - -0.9
3,339,327 + +0.9
3,339,342 + +1.0
3,339,390 - Xcc-8004.3452.1 0.14 -1.4
3,339,390 - Xcc-8004.3452.1 0.14 +0.7
3,339,390 - Xcc-8004.3452.1 0.14 +0.9
3,339,390 - Xcc-8004.3452.1 0.14 -0.4
3,339,390 - Xcc-8004.3452.1 0.14 +1.1
3,339,397 + Xcc-8004.3452.1 0.14 +0.3
3,339,397 + Xcc-8004.3452.1 0.14 -0.2
3,339,397 + Xcc-8004.3452.1 0.14 -0.6
3,339,397 + Xcc-8004.3452.1 0.14 -0.4
3,339,397 + Xcc-8004.3452.1 0.14 +0.6
3,339,398 - Xcc-8004.3452.1 0.14 -1.1
3,339,398 - Xcc-8004.3452.1 0.14 -0.1
3,339,398 - Xcc-8004.3452.1 0.14 -0.2
3,339,398 - Xcc-8004.3452.1 0.14 +0.3
3,339,398 - Xcc-8004.3452.1 0.14 +1.0
3,339,399 + Xcc-8004.3452.1 0.14 -0.7
3,339,399 + Xcc-8004.3452.1 0.14 -0.6
3,339,399 + Xcc-8004.3452.1 0.14 -0.3
3,339,399 + Xcc-8004.3452.1 0.14 +1.5
3,339,399 + Xcc-8004.3452.1 0.14 -0.8
3,339,399 + Xcc-8004.3452.1 0.14 -0.7
3,339,399 + Xcc-8004.3452.1 0.14 -2.9
3,339,399 + Xcc-8004.3452.1 0.14 -0.0
3,339,400 - Xcc-8004.3452.1 0.14 -1.1
3,339,400 - Xcc-8004.3452.1 0.14 +0.1
3,339,400 - Xcc-8004.3452.1 0.14 +0.5
3,339,400 - Xcc-8004.3452.1 0.14 +0.6
3,339,444 + Xcc-8004.3452.1 0.18 -0.9
3,339,444 + Xcc-8004.3452.1 0.18 +0.1
3,339,525 + Xcc-8004.3452.1 0.25 -0.7
3,339,531 - Xcc-8004.3452.1 0.26 +0.4
3,339,745 + Xcc-8004.3452.1 0.44 -2.0
3,339,746 - Xcc-8004.3452.1 0.45 -2.5
3,339,746 - Xcc-8004.3452.1 0.45 -0.2
3,339,746 - Xcc-8004.3452.1 0.45 -0.4
3,339,749 + Xcc-8004.3452.1 0.45 +0.0
3,339,749 + Xcc-8004.3452.1 0.45 +2.1
3,339,749 + Xcc-8004.3452.1 0.45 -1.4
3,339,749 + Xcc-8004.3452.1 0.45 +0.3
3,339,750 - Xcc-8004.3452.1 0.45 +0.1
3,339,750 - Xcc-8004.3452.1 0.45 +0.5
3,339,750 - Xcc-8004.3452.1 0.45 +0.9
3,339,758 + Xcc-8004.3452.1 0.46 -0.9
3,339,758 + Xcc-8004.3452.1 0.46 -1.0
3,339,773 + Xcc-8004.3452.1 0.47 -0.5
3,339,773 + Xcc-8004.3452.1 0.47 -0.7
3,339,773 + Xcc-8004.3452.1 0.47 +0.4
3,339,773 + Xcc-8004.3452.1 0.47 -1.2
3,339,773 + Xcc-8004.3452.1 0.47 -2.6
3,339,774 - Xcc-8004.3452.1 0.47 -0.5
3,339,783 + Xcc-8004.3452.1 0.48 +0.1
3,339,799 - Xcc-8004.3452.1 0.49 -1.4
3,339,801 + Xcc-8004.3452.1 0.49 +1.6
3,339,802 - Xcc-8004.3452.1 0.49 +0.9
3,339,844 - Xcc-8004.3452.1 0.53 -0.3
3,339,844 - Xcc-8004.3452.1 0.53 -0.6
3,339,951 + Xcc-8004.3452.1 0.62 -2.0
3,339,951 + Xcc-8004.3452.1 0.62 -0.6
3,339,951 + Xcc-8004.3452.1 0.62 +0.1
3,339,951 + Xcc-8004.3452.1 0.62 +0.3
3,339,951 + Xcc-8004.3452.1 0.62 +0.7
3,339,951 + Xcc-8004.3452.1 0.62 -0.3
3,339,951 + Xcc-8004.3452.1 0.62 -0.8
3,339,952 - Xcc-8004.3452.1 0.62 -0.7
3,339,952 - Xcc-8004.3452.1 0.62 -1.0
3,339,952 - Xcc-8004.3452.1 0.62 +1.2
3,339,952 - Xcc-8004.3452.1 0.62 -1.5
3,340,003 + Xcc-8004.3452.1 0.67 +1.3
3,340,003 + Xcc-8004.3452.1 0.67 +0.8
3,340,004 - Xcc-8004.3452.1 0.67 +1.9
3,340,004 - Xcc-8004.3452.1 0.67 -0.2
3,340,025 + Xcc-8004.3452.1 0.69 +1.5
3,340,025 + Xcc-8004.3452.1 0.69 -0.8
3,340,025 + Xcc-8004.3452.1 0.69 +1.0
3,340,025 + Xcc-8004.3452.1 0.69 -0.3
3,340,025 + Xcc-8004.3452.1 0.69 -0.5
3,340,026 - Xcc-8004.3452.1 0.69 -0.6

Or see this region's nucleotide sequence