Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.3372.1 and Xcc-8004.3373.1 are separated by 29 nucleotides Xcc-8004.3373.1 and Xcc-8004.3374.1 overlap by 4 nucleotides Xcc-8004.3374.1 and Xcc-8004.3375.1 are separated by 252 nucleotides Xcc-8004.3375.1 and Xcc-8004.3376.1 are separated by 28 nucleotides Xcc-8004.3376.1 and Xcc-8004.3377.1 are separated by 28 nucleotides Xcc-8004.3377.1 and Xcc-8004.3378.1 are separated by 28 nucleotides
Xcc-8004.3372.1: Xcc-8004.3372.1 - Beta-glucosidase (EC 3.2.1.21), at 3,268,200 to 3,269,723
Xcc-8004.3372.1
Xcc-8004.3373.1: Xcc-8004.3373.1 - hypothetical protein, at 3,269,753 to 3,270,010
Xcc-8004.3373.1
Xcc-8004.3374.1: Xcc-8004.3374.1 - hypothetical protein, at 3,270,007 to 3,270,231
Xcc-8004.3374.1
Xcc-8004.3375.1: Xcc-8004.3375.1 - hypothetical protein, at 3,270,484 to 3,270,594
Xcc-8004.3375.1
Xcc-8004.3376.1: Xcc-8004.3376.1 - Butyryl-CoA dehydrogenase (EC 1.3.99.2), at 3,270,623 to 3,270,733
Xcc-8004.3376.1
Xcc-8004.3377.1: Xcc-8004.3377.1 - Butyryl-CoA dehydrogenase (EC 1.3.99.2), at 3,270,762 to 3,270,872
Xcc-8004.3377.1
Xcc-8004.3378.1: Xcc-8004.3378.1 - hypothetical protein, at 3,270,901 to 3,272,049
Xcc-8004.3378.1
Position (kb) 3270
3271 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 3269.646 kb on + strand at 3269.775 kb on - strand at 3269.787 kb on + strand, within Xcc-8004.3373.1 at 3269.787 kb on + strand, within Xcc-8004.3373.1 at 3269.787 kb on + strand, within Xcc-8004.3373.1 at 3269.788 kb on - strand, within Xcc-8004.3373.1 at 3269.788 kb on - strand, within Xcc-8004.3373.1 at 3269.860 kb on + strand, within Xcc-8004.3373.1 at 3269.860 kb on + strand, within Xcc-8004.3373.1 at 3269.861 kb on - strand, within Xcc-8004.3373.1 at 3269.861 kb on - strand, within Xcc-8004.3373.1 at 3269.869 kb on + strand, within Xcc-8004.3373.1 at 3269.933 kb on + strand, within Xcc-8004.3373.1 at 3269.934 kb on - strand, within Xcc-8004.3373.1 at 3269.958 kb on + strand, within Xcc-8004.3373.1 at 3270.000 kb on + strand at 3270.063 kb on + strand, within Xcc-8004.3374.1 at 3270.092 kb on + strand, within Xcc-8004.3374.1 at 3270.093 kb on - strand, within Xcc-8004.3374.1 at 3270.093 kb on - strand, within Xcc-8004.3374.1 at 3270.155 kb on - strand, within Xcc-8004.3374.1 at 3270.285 kb on - strand at 3270.313 kb on + strand at 3270.313 kb on + strand at 3270.314 kb on - strand at 3270.377 kb on + strand at 3270.377 kb on + strand at 3270.403 kb on - strand at 3270.403 kb on - strand at 3270.403 kb on - strand at 3270.403 kb on - strand at 3270.403 kb on - strand at 3270.403 kb on - strand at 3270.425 kb on - strand at 3270.425 kb on - strand at 3270.444 kb on + strand at 3270.545 kb on + strand, within Xcc-8004.3375.1 at 3270.545 kb on + strand, within Xcc-8004.3375.1 at 3270.545 kb on + strand, within Xcc-8004.3375.1 at 3270.545 kb on + strand, within Xcc-8004.3375.1 at 3270.546 kb on - strand, within Xcc-8004.3375.1 at 3270.684 kb on + strand, within Xcc-8004.3376.1 at 3270.684 kb on + strand, within Xcc-8004.3376.1 at 3270.684 kb on + strand, within Xcc-8004.3376.1 at 3270.684 kb on + strand, within Xcc-8004.3376.1 at 3270.684 kb on + strand, within Xcc-8004.3376.1 at 3270.684 kb on + strand, within Xcc-8004.3376.1 at 3270.823 kb on + strand, within Xcc-8004.3377.1 at 3270.962 kb on + strand at 3270.962 kb on + strand at 3270.962 kb on + strand at 3270.963 kb on - strand at 3270.992 kb on + strand at 3271.019 kb on + strand, within Xcc-8004.3378.1 at 3271.020 kb on - strand, within Xcc-8004.3378.1 at 3271.257 kb on - strand, within Xcc-8004.3378.1 at 3271.257 kb on - strand, within Xcc-8004.3378.1 at 3271.274 kb on + strand, within Xcc-8004.3378.1 at 3271.274 kb on + strand, within Xcc-8004.3378.1 at 3271.274 kb on + strand, within Xcc-8004.3378.1 at 3271.275 kb on - strand, within Xcc-8004.3378.1 at 3271.393 kb on + strand, within Xcc-8004.3378.1 at 3271.397 kb on + strand, within Xcc-8004.3378.1 at 3271.397 kb on + strand, within Xcc-8004.3378.1 at 3271.485 kb on + strand, within Xcc-8004.3378.1 at 3271.486 kb on - strand, within Xcc-8004.3378.1 at 3271.503 kb on + strand, within Xcc-8004.3378.1 at 3271.553 kb on + strand, within Xcc-8004.3378.1 at 3271.553 kb on + strand, within Xcc-8004.3378.1 at 3271.553 kb on + strand, within Xcc-8004.3378.1 at 3271.553 kb on + strand, within Xcc-8004.3378.1 at 3271.553 kb on + strand, within Xcc-8004.3378.1 at 3271.553 kb on + strand, within Xcc-8004.3378.1 at 3271.553 kb on + strand, within Xcc-8004.3378.1 at 3271.553 kb on + strand, within Xcc-8004.3378.1 at 3271.553 kb on + strand, within Xcc-8004.3378.1 at 3271.554 kb on - strand, within Xcc-8004.3378.1 at 3271.554 kb on - strand, within Xcc-8004.3378.1 at 3271.554 kb on - strand, within Xcc-8004.3378.1 at 3271.554 kb on - strand, within Xcc-8004.3378.1 at 3271.721 kb on + strand, within Xcc-8004.3378.1 at 3271.721 kb on + strand, within Xcc-8004.3378.1 at 3271.721 kb on + strand, within Xcc-8004.3378.1 at 3271.721 kb on + strand, within Xcc-8004.3378.1 at 3271.721 kb on + strand, within Xcc-8004.3378.1 at 3271.721 kb on + strand, within Xcc-8004.3378.1 at 3271.721 kb on + strand, within Xcc-8004.3378.1 at 3271.722 kb on - strand, within Xcc-8004.3378.1 at 3271.722 kb on - strand, within Xcc-8004.3378.1 at 3271.722 kb on - strand, within Xcc-8004.3378.1 at 3271.722 kb on - strand, within Xcc-8004.3378.1
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X remove 3,269,646 + -0.8 3,269,775 - +0.6 3,269,787 + Xcc-8004.3373.1 0.13 +0.5 3,269,787 + Xcc-8004.3373.1 0.13 -0.1 3,269,787 + Xcc-8004.3373.1 0.13 +1.0 3,269,788 - Xcc-8004.3373.1 0.14 +0.6 3,269,788 - Xcc-8004.3373.1 0.14 +0.1 3,269,860 + Xcc-8004.3373.1 0.41 -0.5 3,269,860 + Xcc-8004.3373.1 0.41 +0.9 3,269,861 - Xcc-8004.3373.1 0.42 -1.5 3,269,861 - Xcc-8004.3373.1 0.42 -1.3 3,269,869 + Xcc-8004.3373.1 0.45 -0.0 3,269,933 + Xcc-8004.3373.1 0.70 +1.0 3,269,934 - Xcc-8004.3373.1 0.70 +2.5 3,269,958 + Xcc-8004.3373.1 0.79 -0.6 3,270,000 + -0.6 3,270,063 + Xcc-8004.3374.1 0.25 +0.2 3,270,092 + Xcc-8004.3374.1 0.38 +0.1 3,270,093 - Xcc-8004.3374.1 0.38 +0.1 3,270,093 - Xcc-8004.3374.1 0.38 +0.7 3,270,155 - Xcc-8004.3374.1 0.66 -1.3 3,270,285 - -1.1 3,270,313 + +0.3 3,270,313 + +0.6 3,270,314 - -0.2 3,270,377 + -0.3 3,270,377 + -1.2 3,270,403 - -2.1 3,270,403 - -1.1 3,270,403 - +0.1 3,270,403 - +0.4 3,270,403 - +0.5 3,270,403 - +0.4 3,270,425 - +0.7 3,270,425 - -2.0 3,270,444 + +0.4 3,270,545 + Xcc-8004.3375.1 0.55 +0.7 3,270,545 + Xcc-8004.3375.1 0.55 -0.2 3,270,545 + Xcc-8004.3375.1 0.55 -0.9 3,270,545 + Xcc-8004.3375.1 0.55 -1.3 3,270,546 - Xcc-8004.3375.1 0.56 -0.3 3,270,684 + Xcc-8004.3376.1 0.55 -1.0 3,270,684 + Xcc-8004.3376.1 0.55 -0.9 3,270,684 + Xcc-8004.3376.1 0.55 -1.4 3,270,684 + Xcc-8004.3376.1 0.55 +0.1 3,270,684 + Xcc-8004.3376.1 0.55 +1.5 3,270,684 + Xcc-8004.3376.1 0.55 -1.1 3,270,823 + Xcc-8004.3377.1 0.55 +1.1 3,270,962 + +0.0 3,270,962 + +0.2 3,270,962 + +0.3 3,270,963 - -0.7 3,270,992 + -1.1 3,271,019 + Xcc-8004.3378.1 0.10 +0.0 3,271,020 - Xcc-8004.3378.1 0.10 -0.9 3,271,257 - Xcc-8004.3378.1 0.31 -1.0 3,271,257 - Xcc-8004.3378.1 0.31 -1.3 3,271,274 + Xcc-8004.3378.1 0.32 -1.7 3,271,274 + Xcc-8004.3378.1 0.32 +0.2 3,271,274 + Xcc-8004.3378.1 0.32 -0.5 3,271,275 - Xcc-8004.3378.1 0.33 -0.3 3,271,393 + Xcc-8004.3378.1 0.43 +0.5 3,271,397 + Xcc-8004.3378.1 0.43 -0.9 3,271,397 + Xcc-8004.3378.1 0.43 +0.6 3,271,485 + Xcc-8004.3378.1 0.51 -1.4 3,271,486 - Xcc-8004.3378.1 0.51 +1.8 3,271,503 + Xcc-8004.3378.1 0.52 -0.2 3,271,553 + Xcc-8004.3378.1 0.57 -1.2 3,271,553 + Xcc-8004.3378.1 0.57 +0.2 3,271,553 + Xcc-8004.3378.1 0.57 -1.1 3,271,553 + Xcc-8004.3378.1 0.57 +0.9 3,271,553 + Xcc-8004.3378.1 0.57 +0.5 3,271,553 + Xcc-8004.3378.1 0.57 +0.5 3,271,553 + Xcc-8004.3378.1 0.57 -1.0 3,271,553 + Xcc-8004.3378.1 0.57 -0.8 3,271,553 + Xcc-8004.3378.1 0.57 -0.1 3,271,554 - Xcc-8004.3378.1 0.57 +1.0 3,271,554 - Xcc-8004.3378.1 0.57 -0.6 3,271,554 - Xcc-8004.3378.1 0.57 -0.2 3,271,554 - Xcc-8004.3378.1 0.57 +0.7 3,271,721 + Xcc-8004.3378.1 0.71 -0.1 3,271,721 + Xcc-8004.3378.1 0.71 +1.0 3,271,721 + Xcc-8004.3378.1 0.71 +0.0 3,271,721 + Xcc-8004.3378.1 0.71 +3.2 3,271,721 + Xcc-8004.3378.1 0.71 -0.8 3,271,721 + Xcc-8004.3378.1 0.71 -0.3 3,271,721 + Xcc-8004.3378.1 0.71 -0.2 3,271,722 - Xcc-8004.3378.1 0.71 +0.3 3,271,722 - Xcc-8004.3378.1 0.71 +0.0 3,271,722 - Xcc-8004.3378.1 0.71 +0.2 3,271,722 - Xcc-8004.3378.1 0.71 -1.3
Or see this region's nucleotide sequence