Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.3342.1

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.3340.1 and Xcc-8004.3341.1 overlap by 4 nucleotidesXcc-8004.3341.1 and Xcc-8004.3342.1 are separated by 68 nucleotidesXcc-8004.3342.1 and Xcc-8004.3343.1 are separated by 9 nucleotides Xcc-8004.3340.1: Xcc-8004.3340.1 - FIG01209728: hypothetical protein, at 3,240,747 to 3,241,274 Xcc-8004.3340.1 Xcc-8004.3341.1: Xcc-8004.3341.1 - FIG01209903: hypothetical protein, at 3,241,271 to 3,241,762 Xcc-8004.3341.1 Xcc-8004.3342.1: Xcc-8004.3342.1 - Negative regulator of beta-lactamase expression, at 3,241,831 to 3,242,361 Xcc-8004.3342.1 Xcc-8004.3343.1: Xcc-8004.3343.1 - FIG01209703: hypothetical protein, at 3,242,371 to 3,243,120 Xcc-8004.3343.1 Position (kb) 3241 3242 3243Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3241.021 kb on + strand, within Xcc-8004.3340.1at 3241.021 kb on + strand, within Xcc-8004.3340.1at 3241.021 kb on + strand, within Xcc-8004.3340.1at 3241.021 kb on + strand, within Xcc-8004.3340.1at 3241.021 kb on + strand, within Xcc-8004.3340.1at 3241.022 kb on - strand, within Xcc-8004.3340.1at 3241.022 kb on - strand, within Xcc-8004.3340.1at 3241.022 kb on - strand, within Xcc-8004.3340.1at 3241.022 kb on - strand, within Xcc-8004.3340.1at 3241.022 kb on - strand, within Xcc-8004.3340.1at 3241.022 kb on - strand, within Xcc-8004.3340.1at 3241.274 kb on + strandat 3241.274 kb on + strandat 3241.358 kb on - strand, within Xcc-8004.3341.1at 3241.359 kb on + strand, within Xcc-8004.3341.1at 3241.359 kb on + strand, within Xcc-8004.3341.1at 3241.602 kb on + strand, within Xcc-8004.3341.1at 3241.602 kb on + strand, within Xcc-8004.3341.1at 3241.602 kb on + strand, within Xcc-8004.3341.1at 3241.602 kb on + strand, within Xcc-8004.3341.1at 3241.603 kb on - strand, within Xcc-8004.3341.1at 3241.624 kb on + strand, within Xcc-8004.3341.1at 3241.773 kb on + strandat 3241.773 kb on + strandat 3241.774 kb on - strandat 3241.774 kb on - strandat 3241.774 kb on - strandat 3241.822 kb on + strandat 3241.822 kb on + strandat 3241.823 kb on - strandat 3241.823 kb on - strandat 3241.823 kb on - strandat 3241.823 kb on - strandat 3241.823 kb on - strandat 3241.823 kb on - strandat 3241.837 kb on + strandat 3241.838 kb on - strandat 3241.838 kb on - strandat 3241.948 kb on + strand, within Xcc-8004.3342.1at 3241.948 kb on + strand, within Xcc-8004.3342.1at 3241.949 kb on - strand, within Xcc-8004.3342.1at 3241.949 kb on - strand, within Xcc-8004.3342.1at 3241.949 kb on - strand, within Xcc-8004.3342.1at 3241.978 kb on + strand, within Xcc-8004.3342.1at 3241.978 kb on + strand, within Xcc-8004.3342.1at 3241.978 kb on + strand, within Xcc-8004.3342.1at 3241.981 kb on + strand, within Xcc-8004.3342.1at 3241.981 kb on + strand, within Xcc-8004.3342.1at 3241.981 kb on + strand, within Xcc-8004.3342.1at 3241.981 kb on + strand, within Xcc-8004.3342.1at 3241.981 kb on + strand, within Xcc-8004.3342.1at 3241.981 kb on + strand, within Xcc-8004.3342.1at 3241.982 kb on - strand, within Xcc-8004.3342.1at 3242.011 kb on + strand, within Xcc-8004.3342.1at 3242.011 kb on + strand, within Xcc-8004.3342.1at 3242.012 kb on - strand, within Xcc-8004.3342.1at 3242.012 kb on - strand, within Xcc-8004.3342.1at 3242.012 kb on - strand, within Xcc-8004.3342.1at 3242.198 kb on + strand, within Xcc-8004.3342.1at 3242.198 kb on + strand, within Xcc-8004.3342.1at 3242.198 kb on + strand, within Xcc-8004.3342.1at 3242.198 kb on + strand, within Xcc-8004.3342.1at 3242.198 kb on + strand, within Xcc-8004.3342.1at 3242.199 kb on - strand, within Xcc-8004.3342.1at 3242.390 kb on + strandat 3242.390 kb on + strandat 3242.390 kb on + strandat 3242.390 kb on + strandat 3242.391 kb on - strandat 3242.537 kb on + strand, within Xcc-8004.3343.1at 3242.538 kb on - strand, within Xcc-8004.3343.1at 3242.538 kb on - strand, within Xcc-8004.3343.1at 3242.538 kb on - strand, within Xcc-8004.3343.1at 3242.543 kb on + strand, within Xcc-8004.3343.1at 3242.544 kb on - strand, within Xcc-8004.3343.1at 3242.558 kb on + strand, within Xcc-8004.3343.1at 3242.559 kb on - strand, within Xcc-8004.3343.1at 3242.738 kb on + strand, within Xcc-8004.3343.1at 3242.739 kb on - strand, within Xcc-8004.3343.1at 3242.786 kb on + strand, within Xcc-8004.3343.1at 3242.786 kb on + strand, within Xcc-8004.3343.1at 3242.786 kb on + strand, within Xcc-8004.3343.1at 3242.786 kb on + strand, within Xcc-8004.3343.1at 3242.786 kb on + strand, within Xcc-8004.3343.1at 3242.787 kb on - strand, within Xcc-8004.3343.1at 3242.787 kb on - strand, within Xcc-8004.3343.1at 3242.787 kb on - strand, within Xcc-8004.3343.1at 3242.840 kb on + strand, within Xcc-8004.3343.1at 3242.840 kb on + strand, within Xcc-8004.3343.1at 3242.841 kb on - strand, within Xcc-8004.3343.1at 3242.841 kb on - strand, within Xcc-8004.3343.1at 3242.841 kb on - strand, within Xcc-8004.3343.1at 3242.841 kb on - strand, within Xcc-8004.3343.1at 3242.841 kb on - strand, within Xcc-8004.3343.1at 3242.841 kb on - strand, within Xcc-8004.3343.1at 3242.864 kb on + strand, within Xcc-8004.3343.1at 3242.864 kb on + strand, within Xcc-8004.3343.1at 3242.864 kb on + strand, within Xcc-8004.3343.1at 3242.864 kb on + strand, within Xcc-8004.3343.1at 3242.864 kb on + strand, within Xcc-8004.3343.1at 3242.864 kb on + strand, within Xcc-8004.3343.1at 3242.864 kb on + strand, within Xcc-8004.3343.1at 3242.864 kb on + strand, within Xcc-8004.3343.1at 3242.864 kb on + strand, within Xcc-8004.3343.1at 3242.864 kb on + strand, within Xcc-8004.3343.1at 3242.864 kb on + strand, within Xcc-8004.3343.1at 3242.865 kb on - strand, within Xcc-8004.3343.1at 3242.865 kb on - strand, within Xcc-8004.3343.1at 3242.865 kb on - strand, within Xcc-8004.3343.1at 3242.865 kb on - strand, within Xcc-8004.3343.1at 3242.865 kb on - strand, within Xcc-8004.3343.1at 3242.865 kb on - strand, within Xcc-8004.3343.1at 3242.865 kb on - strand, within Xcc-8004.3343.1at 3242.865 kb on - strand, within Xcc-8004.3343.1at 3242.865 kb on - strand, within Xcc-8004.3343.1at 3242.865 kb on - strand, within Xcc-8004.3343.1at 3243.113 kb on + strandat 3243.114 kb on - strandat 3243.114 kb on - strandat 3243.114 kb on - strandat 3243.186 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X
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3,241,021 + Xcc-8004.3340.1 0.52 -1.6
3,241,021 + Xcc-8004.3340.1 0.52 -0.3
3,241,021 + Xcc-8004.3340.1 0.52 +0.2
3,241,021 + Xcc-8004.3340.1 0.52 -0.6
3,241,021 + Xcc-8004.3340.1 0.52 +0.3
3,241,022 - Xcc-8004.3340.1 0.52 +1.1
3,241,022 - Xcc-8004.3340.1 0.52 -0.1
3,241,022 - Xcc-8004.3340.1 0.52 +0.6
3,241,022 - Xcc-8004.3340.1 0.52 +1.9
3,241,022 - Xcc-8004.3340.1 0.52 -0.1
3,241,022 - Xcc-8004.3340.1 0.52 +0.2
3,241,274 + +0.7
3,241,274 + +0.5
3,241,358 - Xcc-8004.3341.1 0.18 -0.2
3,241,359 + Xcc-8004.3341.1 0.18 +0.8
3,241,359 + Xcc-8004.3341.1 0.18 -0.1
3,241,602 + Xcc-8004.3341.1 0.67 +1.5
3,241,602 + Xcc-8004.3341.1 0.67 +0.3
3,241,602 + Xcc-8004.3341.1 0.67 +0.7
3,241,602 + Xcc-8004.3341.1 0.67 -0.3
3,241,603 - Xcc-8004.3341.1 0.67 -1.2
3,241,624 + Xcc-8004.3341.1 0.72 -1.0
3,241,773 + +0.8
3,241,773 + +1.4
3,241,774 - -0.3
3,241,774 - +0.0
3,241,774 - +0.8
3,241,822 + -0.7
3,241,822 + -1.4
3,241,823 - -0.7
3,241,823 - -1.2
3,241,823 - -1.6
3,241,823 - +0.3
3,241,823 - +0.0
3,241,823 - -1.6
3,241,837 + +0.0
3,241,838 - -0.5
3,241,838 - -3.0
3,241,948 + Xcc-8004.3342.1 0.22 -1.1
3,241,948 + Xcc-8004.3342.1 0.22 -1.4
3,241,949 - Xcc-8004.3342.1 0.22 +1.3
3,241,949 - Xcc-8004.3342.1 0.22 +1.1
3,241,949 - Xcc-8004.3342.1 0.22 +0.0
3,241,978 + Xcc-8004.3342.1 0.28 -0.3
3,241,978 + Xcc-8004.3342.1 0.28 -0.5
3,241,978 + Xcc-8004.3342.1 0.28 -0.6
3,241,981 + Xcc-8004.3342.1 0.28 -2.2
3,241,981 + Xcc-8004.3342.1 0.28 -1.3
3,241,981 + Xcc-8004.3342.1 0.28 -0.5
3,241,981 + Xcc-8004.3342.1 0.28 +0.1
3,241,981 + Xcc-8004.3342.1 0.28 -0.0
3,241,981 + Xcc-8004.3342.1 0.28 -1.0
3,241,982 - Xcc-8004.3342.1 0.28 -1.3
3,242,011 + Xcc-8004.3342.1 0.34 -0.6
3,242,011 + Xcc-8004.3342.1 0.34 -2.3
3,242,012 - Xcc-8004.3342.1 0.34 -1.5
3,242,012 - Xcc-8004.3342.1 0.34 +0.1
3,242,012 - Xcc-8004.3342.1 0.34 -0.5
3,242,198 + Xcc-8004.3342.1 0.69 -1.2
3,242,198 + Xcc-8004.3342.1 0.69 +0.4
3,242,198 + Xcc-8004.3342.1 0.69 -1.4
3,242,198 + Xcc-8004.3342.1 0.69 -0.7
3,242,198 + Xcc-8004.3342.1 0.69 -0.7
3,242,199 - Xcc-8004.3342.1 0.69 -1.4
3,242,390 + -0.3
3,242,390 + +0.8
3,242,390 + -0.3
3,242,390 + -1.3
3,242,391 - -0.8
3,242,537 + Xcc-8004.3343.1 0.22 -1.7
3,242,538 - Xcc-8004.3343.1 0.22 -0.1
3,242,538 - Xcc-8004.3343.1 0.22 -0.8
3,242,538 - Xcc-8004.3343.1 0.22 -1.1
3,242,543 + Xcc-8004.3343.1 0.23 +0.9
3,242,544 - Xcc-8004.3343.1 0.23 -0.8
3,242,558 + Xcc-8004.3343.1 0.25 +0.9
3,242,559 - Xcc-8004.3343.1 0.25 +0.2
3,242,738 + Xcc-8004.3343.1 0.49 -1.7
3,242,739 - Xcc-8004.3343.1 0.49 -1.3
3,242,786 + Xcc-8004.3343.1 0.55 +0.0
3,242,786 + Xcc-8004.3343.1 0.55 -0.7
3,242,786 + Xcc-8004.3343.1 0.55 +0.6
3,242,786 + Xcc-8004.3343.1 0.55 -0.2
3,242,786 + Xcc-8004.3343.1 0.55 -0.5
3,242,787 - Xcc-8004.3343.1 0.55 -1.6
3,242,787 - Xcc-8004.3343.1 0.55 -0.4
3,242,787 - Xcc-8004.3343.1 0.55 -1.6
3,242,840 + Xcc-8004.3343.1 0.63 -1.8
3,242,840 + Xcc-8004.3343.1 0.63 -0.3
3,242,841 - Xcc-8004.3343.1 0.63 -1.6
3,242,841 - Xcc-8004.3343.1 0.63 -0.7
3,242,841 - Xcc-8004.3343.1 0.63 -1.2
3,242,841 - Xcc-8004.3343.1 0.63 +0.7
3,242,841 - Xcc-8004.3343.1 0.63 -0.3
3,242,841 - Xcc-8004.3343.1 0.63 +0.4
3,242,864 + Xcc-8004.3343.1 0.66 -0.4
3,242,864 + Xcc-8004.3343.1 0.66 +0.6
3,242,864 + Xcc-8004.3343.1 0.66 +0.6
3,242,864 + Xcc-8004.3343.1 0.66 +0.6
3,242,864 + Xcc-8004.3343.1 0.66 +1.5
3,242,864 + Xcc-8004.3343.1 0.66 +0.3
3,242,864 + Xcc-8004.3343.1 0.66 -0.3
3,242,864 + Xcc-8004.3343.1 0.66 -0.6
3,242,864 + Xcc-8004.3343.1 0.66 -0.3
3,242,864 + Xcc-8004.3343.1 0.66 +1.0
3,242,864 + Xcc-8004.3343.1 0.66 -0.4
3,242,865 - Xcc-8004.3343.1 0.66 -1.2
3,242,865 - Xcc-8004.3343.1 0.66 +0.6
3,242,865 - Xcc-8004.3343.1 0.66 -0.4
3,242,865 - Xcc-8004.3343.1 0.66 -0.0
3,242,865 - Xcc-8004.3343.1 0.66 +0.6
3,242,865 - Xcc-8004.3343.1 0.66 -0.8
3,242,865 - Xcc-8004.3343.1 0.66 -0.6
3,242,865 - Xcc-8004.3343.1 0.66 -0.8
3,242,865 - Xcc-8004.3343.1 0.66 +0.2
3,242,865 - Xcc-8004.3343.1 0.66 +0.7
3,243,113 + +1.3
3,243,114 - +0.6
3,243,114 - -0.7
3,243,114 - +0.8
3,243,186 - +0.2

Or see this region's nucleotide sequence