Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.3338.1 and Xcc-8004.3339.1 are separated by 174 nucleotides Xcc-8004.3339.1 and Xcc-8004.3340.1 overlap by 1 nucleotides Xcc-8004.3340.1 and Xcc-8004.3341.1 overlap by 4 nucleotides
Xcc-8004.3338.1: Xcc-8004.3338.1 - FIG00613368: hypothetical protein, at 3,239,062 to 3,240,021
Xcc-8004.3338.1
Xcc-8004.3339.1: Xcc-8004.3339.1 - N-acetylglutamate synthase (EC 2.3.1.1), at 3,240,196 to 3,240,747
Xcc-8004.3339.1
Xcc-8004.3340.1: Xcc-8004.3340.1 - FIG01209728: hypothetical protein, at 3,240,747 to 3,241,274
Xcc-8004.3340.1
Xcc-8004.3341.1: Xcc-8004.3341.1 - FIG01209903: hypothetical protein, at 3,241,271 to 3,241,762
Xcc-8004.3341.1
Position (kb) 3240
3241 Strain fitness (log2 ratio) -1
0
1
2 at 3239.357 kb on + strand, within Xcc-8004.3338.1 at 3239.357 kb on + strand, within Xcc-8004.3338.1 at 3239.357 kb on + strand, within Xcc-8004.3338.1 at 3239.358 kb on - strand, within Xcc-8004.3338.1 at 3239.358 kb on - strand, within Xcc-8004.3338.1 at 3239.390 kb on + strand, within Xcc-8004.3338.1 at 3239.391 kb on - strand, within Xcc-8004.3338.1 at 3239.574 kb on - strand, within Xcc-8004.3338.1 at 3239.720 kb on + strand, within Xcc-8004.3338.1 at 3239.721 kb on - strand, within Xcc-8004.3338.1 at 3239.765 kb on + strand, within Xcc-8004.3338.1 at 3239.765 kb on + strand, within Xcc-8004.3338.1 at 3239.765 kb on + strand, within Xcc-8004.3338.1 at 3239.765 kb on + strand, within Xcc-8004.3338.1 at 3239.765 kb on + strand, within Xcc-8004.3338.1 at 3239.766 kb on - strand, within Xcc-8004.3338.1 at 3239.766 kb on - strand, within Xcc-8004.3338.1 at 3239.766 kb on - strand, within Xcc-8004.3338.1 at 3239.766 kb on - strand, within Xcc-8004.3338.1 at 3239.766 kb on - strand, within Xcc-8004.3338.1 at 3240.156 kb on - strand at 3240.222 kb on - strand at 3240.530 kb on + strand, within Xcc-8004.3339.1 at 3240.530 kb on + strand, within Xcc-8004.3339.1 at 3240.530 kb on + strand, within Xcc-8004.3339.1 at 3240.530 kb on + strand, within Xcc-8004.3339.1 at 3240.531 kb on - strand, within Xcc-8004.3339.1 at 3240.615 kb on + strand, within Xcc-8004.3339.1 at 3240.729 kb on + strand at 3240.729 kb on + strand at 3240.730 kb on - strand at 3240.730 kb on - strand at 3240.730 kb on - strand at 3241.021 kb on + strand, within Xcc-8004.3340.1 at 3241.021 kb on + strand, within Xcc-8004.3340.1 at 3241.021 kb on + strand, within Xcc-8004.3340.1 at 3241.021 kb on + strand, within Xcc-8004.3340.1 at 3241.021 kb on + strand, within Xcc-8004.3340.1 at 3241.022 kb on - strand, within Xcc-8004.3340.1 at 3241.022 kb on - strand, within Xcc-8004.3340.1 at 3241.022 kb on - strand, within Xcc-8004.3340.1 at 3241.022 kb on - strand, within Xcc-8004.3340.1 at 3241.022 kb on - strand, within Xcc-8004.3340.1 at 3241.022 kb on - strand, within Xcc-8004.3340.1 at 3241.274 kb on + strand at 3241.274 kb on + strand at 3241.358 kb on - strand, within Xcc-8004.3341.1 at 3241.359 kb on + strand, within Xcc-8004.3341.1 at 3241.359 kb on + strand, within Xcc-8004.3341.1 at 3241.602 kb on + strand, within Xcc-8004.3341.1 at 3241.602 kb on + strand, within Xcc-8004.3341.1 at 3241.602 kb on + strand, within Xcc-8004.3341.1 at 3241.602 kb on + strand, within Xcc-8004.3341.1 at 3241.603 kb on - strand, within Xcc-8004.3341.1 at 3241.624 kb on + strand, within Xcc-8004.3341.1
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X remove 3,239,357 + Xcc-8004.3338.1 0.31 -0.1 3,239,357 + Xcc-8004.3338.1 0.31 +0.5 3,239,357 + Xcc-8004.3338.1 0.31 -0.8 3,239,358 - Xcc-8004.3338.1 0.31 +1.7 3,239,358 - Xcc-8004.3338.1 0.31 +0.5 3,239,390 + Xcc-8004.3338.1 0.34 -1.0 3,239,391 - Xcc-8004.3338.1 0.34 +0.3 3,239,574 - Xcc-8004.3338.1 0.53 +1.2 3,239,720 + Xcc-8004.3338.1 0.69 +0.5 3,239,721 - Xcc-8004.3338.1 0.69 -1.7 3,239,765 + Xcc-8004.3338.1 0.73 -0.3 3,239,765 + Xcc-8004.3338.1 0.73 -0.4 3,239,765 + Xcc-8004.3338.1 0.73 +0.9 3,239,765 + Xcc-8004.3338.1 0.73 -0.8 3,239,765 + Xcc-8004.3338.1 0.73 -1.0 3,239,766 - Xcc-8004.3338.1 0.73 +0.7 3,239,766 - Xcc-8004.3338.1 0.73 -0.3 3,239,766 - Xcc-8004.3338.1 0.73 +0.7 3,239,766 - Xcc-8004.3338.1 0.73 +0.1 3,239,766 - Xcc-8004.3338.1 0.73 -1.0 3,240,156 - -0.6 3,240,222 - +0.4 3,240,530 + Xcc-8004.3339.1 0.61 +0.2 3,240,530 + Xcc-8004.3339.1 0.61 -0.1 3,240,530 + Xcc-8004.3339.1 0.61 -0.7 3,240,530 + Xcc-8004.3339.1 0.61 -0.9 3,240,531 - Xcc-8004.3339.1 0.61 -1.6 3,240,615 + Xcc-8004.3339.1 0.76 -0.3 3,240,729 + +0.1 3,240,729 + +1.5 3,240,730 - +0.7 3,240,730 - +0.4 3,240,730 - +0.0 3,241,021 + Xcc-8004.3340.1 0.52 -1.6 3,241,021 + Xcc-8004.3340.1 0.52 -0.3 3,241,021 + Xcc-8004.3340.1 0.52 +0.2 3,241,021 + Xcc-8004.3340.1 0.52 -0.6 3,241,021 + Xcc-8004.3340.1 0.52 +0.3 3,241,022 - Xcc-8004.3340.1 0.52 +1.1 3,241,022 - Xcc-8004.3340.1 0.52 -0.1 3,241,022 - Xcc-8004.3340.1 0.52 +0.6 3,241,022 - Xcc-8004.3340.1 0.52 +1.9 3,241,022 - Xcc-8004.3340.1 0.52 -0.1 3,241,022 - Xcc-8004.3340.1 0.52 +0.2 3,241,274 + +0.7 3,241,274 + +0.5 3,241,358 - Xcc-8004.3341.1 0.18 -0.2 3,241,359 + Xcc-8004.3341.1 0.18 +0.8 3,241,359 + Xcc-8004.3341.1 0.18 -0.1 3,241,602 + Xcc-8004.3341.1 0.67 +1.5 3,241,602 + Xcc-8004.3341.1 0.67 +0.3 3,241,602 + Xcc-8004.3341.1 0.67 +0.7 3,241,602 + Xcc-8004.3341.1 0.67 -0.3 3,241,603 - Xcc-8004.3341.1 0.67 -1.2 3,241,624 + Xcc-8004.3341.1 0.72 -1.0
Or see this region's nucleotide sequence