Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.3322.1

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X
3,220,975	-		Xcc-8004.3320.1	0.34	-0.3
3,220,975	-		Xcc-8004.3320.1	0.34	-0.4
3,221,159	+				-0.4
3,221,159	+				+0.5
3,221,159	+				-0.0
3,221,160	-				+0.7
3,221,160	-				+1.2
3,221,162	-				-0.3
3,221,329	+		Xcc-8004.3321.1	0.62	-0.3
3,221,329	+		Xcc-8004.3321.1	0.62	-1.0
3,221,436	-				-0.4
3,221,436	-				+0.1
3,221,436	-				-0.2
3,221,596	-		Xcc-8004.3322.1	0.46	-1.8
3,221,596	-		Xcc-8004.3322.1	0.46	-2.3
3,221,782	+				+0.2
3,221,782	+				+0.3
3,221,782	+				+0.7
3,221,782	+				-0.8
3,221,782	+				-1.4
3,221,782	+				+0.4
3,221,783	-				+0.0
3,221,783	-				+0.4
3,221,783	-				-0.4
3,221,783	-				-1.2
3,221,783	-				+0.6
3,221,783	-				+1.5
3,221,783	-				+0.8
3,221,783	-				-1.6
3,221,783	-				-0.2
3,221,783	-				+0.5
3,221,783	-				-0.2
3,221,783	-				-0.6
3,221,783	-				+0.1
3,221,912	-		Xcc-8004.3323.1	0.21	-1.6
3,222,019	+		Xcc-8004.3323.1	0.38	-1.7
3,222,019	+		Xcc-8004.3323.1	0.38	+0.3
3,222,019	+		Xcc-8004.3323.1	0.38	-0.7
3,222,019	+		Xcc-8004.3323.1	0.38	-1.3
3,222,019	+		Xcc-8004.3323.1	0.38	-0.5
3,222,019	+		Xcc-8004.3323.1	0.38	+0.0
3,222,019	+		Xcc-8004.3323.1	0.38	+0.2
3,222,019	+		Xcc-8004.3323.1	0.38	-0.7
3,222,019	+		Xcc-8004.3323.1	0.38	-0.4
3,222,019	+		Xcc-8004.3323.1	0.38	+0.1
3,222,019	+		Xcc-8004.3323.1	0.38	-0.9
3,222,019	+		Xcc-8004.3323.1	0.38	+0.4
3,222,019	+		Xcc-8004.3323.1	0.38	-1.6
3,222,019	+		Xcc-8004.3323.1	0.38	+1.1
3,222,019	+		Xcc-8004.3323.1	0.38	-1.5
3,222,020	-		Xcc-8004.3323.1	0.38	-0.6
3,222,020	-		Xcc-8004.3323.1	0.38	+0.6
3,222,020	-		Xcc-8004.3323.1	0.38	-0.2
3,222,020	-		Xcc-8004.3323.1	0.38	-0.8
3,222,020	-		Xcc-8004.3323.1	0.38	+1.5
3,222,020	-		Xcc-8004.3323.1	0.38	+0.5
3,222,020	-		Xcc-8004.3323.1	0.38	-0.5
3,222,020	-		Xcc-8004.3323.1	0.38	-0.5
3,222,020	-		Xcc-8004.3323.1	0.38	-1.2
3,222,020	-		Xcc-8004.3323.1	0.38	+0.7
3,222,020	-		Xcc-8004.3323.1	0.38	+1.0
3,222,020	-		Xcc-8004.3323.1	0.38	+0.6
3,222,020	-		Xcc-8004.3323.1	0.38	-0.3
3,222,020	-		Xcc-8004.3323.1	0.38	+0.5
3,222,020	-		Xcc-8004.3323.1	0.38	+0.3
3,222,020	-		Xcc-8004.3323.1	0.38	+1.1
3,222,020	-		Xcc-8004.3323.1	0.38	+0.9
3,222,079	+		Xcc-8004.3323.1	0.47	-0.4
3,222,079	+		Xcc-8004.3323.1	0.47	+1.0
3,222,080	-		Xcc-8004.3323.1	0.47	+1.5
3,222,080	-		Xcc-8004.3323.1	0.47	+0.8
3,222,080	-		Xcc-8004.3323.1	0.47	-1.1
3,222,405	+				-0.3
3,222,405	+				-0.8
3,222,406	-				+1.3
3,222,455	+				-1.3
3,222,455	+				-0.3
3,222,475	+				-1.0
3,222,475	+				+0.3
3,222,475	+				+0.7
3,222,475	+				-1.5
3,222,476	-				+0.3
3,222,476	-				+1.4
3,222,476	-				-1.1
3,222,476	-				-0.3
3,222,476	-				+0.9
3,222,476	-				-0.7
3,222,476	-				+0.8
3,222,476	-				+0.7
3,222,476	-				-0.7
3,222,476	-				+2.5
3,222,476	-				-0.4
3,222,476	-				-0.1
3,222,501	+				-0.1
3,222,501	+				-0.2
3,222,502	-				-0.3
3,222,502	-				+0.2
3,222,619	+		Xcc-8004.3324.1	0.16	+0.3
3,222,620	-		Xcc-8004.3324.1	0.16	-0.1
3,222,620	-		Xcc-8004.3324.1	0.16	-1.4
3,222,726	+		Xcc-8004.3324.1	0.32	+1.5
3,222,727	-		Xcc-8004.3324.1	0.33	-1.3
3,222,727	-		Xcc-8004.3324.1	0.33	-3.0