Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.3296.1

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.3295.1 and Xcc-8004.3296.1 are separated by 12 nucleotidesXcc-8004.3296.1 and Xcc-8004.3297.1 are separated by 34 nucleotidesXcc-8004.3297.1 and Xcc-8004.3298.1 are separated by 0 nucleotides Xcc-8004.3295.1: Xcc-8004.3295.1 - Imidazolonepropionase (EC 3.5.2.7), at 3,192,511 to 3,193,716 Xcc-8004.3295.1 Xcc-8004.3296.1: Xcc-8004.3296.1 - Histidine ammonia-lyase (EC 4.3.1.3), at 3,193,729 to 3,195,270 Xcc-8004.3296.1 Xcc-8004.3297.1: Xcc-8004.3297.1 - N-formylglutamate deformylase (EC 3.5.1.68), at 3,195,305 to 3,196,147 Xcc-8004.3297.1 Xcc-8004.3298.1: Xcc-8004.3298.1 - Urocanate hydratase (EC 4.2.1.49), at 3,196,148 to 3,197,830 Xcc-8004.3298.1 Position (kb) 3193 3194 3195 3196Strain fitness (log2 ratio) -2 -1 0 1 2at 3192.734 kb on - strand, within Xcc-8004.3295.1at 3192.784 kb on + strand, within Xcc-8004.3295.1at 3192.784 kb on + strand, within Xcc-8004.3295.1at 3192.784 kb on + strand, within Xcc-8004.3295.1at 3192.784 kb on + strand, within Xcc-8004.3295.1at 3192.785 kb on - strand, within Xcc-8004.3295.1at 3192.785 kb on - strand, within Xcc-8004.3295.1at 3192.785 kb on - strand, within Xcc-8004.3295.1at 3193.017 kb on + strand, within Xcc-8004.3295.1at 3193.018 kb on - strand, within Xcc-8004.3295.1at 3193.018 kb on - strand, within Xcc-8004.3295.1at 3193.018 kb on - strand, within Xcc-8004.3295.1at 3193.018 kb on - strand, within Xcc-8004.3295.1at 3193.066 kb on + strand, within Xcc-8004.3295.1at 3193.066 kb on + strand, within Xcc-8004.3295.1at 3193.066 kb on + strand, within Xcc-8004.3295.1at 3193.066 kb on + strand, within Xcc-8004.3295.1at 3193.066 kb on + strand, within Xcc-8004.3295.1at 3193.066 kb on + strand, within Xcc-8004.3295.1at 3193.066 kb on + strand, within Xcc-8004.3295.1at 3193.066 kb on + strand, within Xcc-8004.3295.1at 3193.066 kb on + strand, within Xcc-8004.3295.1at 3193.066 kb on + strand, within Xcc-8004.3295.1at 3193.066 kb on + strand, within Xcc-8004.3295.1at 3193.066 kb on + strand, within Xcc-8004.3295.1at 3193.066 kb on + strand, within Xcc-8004.3295.1at 3193.066 kb on + strand, within Xcc-8004.3295.1at 3193.066 kb on + strand, within Xcc-8004.3295.1at 3193.066 kb on + strand, within Xcc-8004.3295.1at 3193.066 kb on + strand, within Xcc-8004.3295.1at 3193.066 kb on + strand, within Xcc-8004.3295.1at 3193.066 kb on + strand, within Xcc-8004.3295.1at 3193.067 kb on - strand, within Xcc-8004.3295.1at 3193.067 kb on - strand, within Xcc-8004.3295.1at 3193.067 kb on - strand, within Xcc-8004.3295.1at 3193.067 kb on - strand, within Xcc-8004.3295.1at 3193.067 kb on - strand, within Xcc-8004.3295.1at 3193.067 kb on - strand, within Xcc-8004.3295.1at 3193.067 kb on - strand, within Xcc-8004.3295.1at 3193.067 kb on - strand, within Xcc-8004.3295.1at 3193.067 kb on - strand, within Xcc-8004.3295.1at 3193.067 kb on - strand, within Xcc-8004.3295.1at 3193.067 kb on - strand, within Xcc-8004.3295.1at 3193.067 kb on - strand, within Xcc-8004.3295.1at 3193.067 kb on - strand, within Xcc-8004.3295.1at 3193.067 kb on - strand, within Xcc-8004.3295.1at 3193.068 kb on + strand, within Xcc-8004.3295.1at 3193.070 kb on + strand, within Xcc-8004.3295.1at 3193.270 kb on + strand, within Xcc-8004.3295.1at 3193.300 kb on + strand, within Xcc-8004.3295.1at 3193.300 kb on + strand, within Xcc-8004.3295.1at 3193.301 kb on - strand, within Xcc-8004.3295.1at 3193.372 kb on + strand, within Xcc-8004.3295.1at 3193.372 kb on + strand, within Xcc-8004.3295.1at 3193.372 kb on + strand, within Xcc-8004.3295.1at 3193.372 kb on + strand, within Xcc-8004.3295.1at 3193.427 kb on + strand, within Xcc-8004.3295.1at 3193.428 kb on - strand, within Xcc-8004.3295.1at 3193.526 kb on + strand, within Xcc-8004.3295.1at 3193.526 kb on + strand, within Xcc-8004.3295.1at 3193.527 kb on - strand, within Xcc-8004.3295.1at 3193.660 kb on + strandat 3193.660 kb on + strandat 3193.660 kb on + strandat 3193.660 kb on + strandat 3193.789 kb on + strandat 3193.789 kb on + strandat 3193.889 kb on - strand, within Xcc-8004.3296.1at 3193.966 kb on - strand, within Xcc-8004.3296.1at 3193.966 kb on - strand, within Xcc-8004.3296.1at 3193.966 kb on - strand, within Xcc-8004.3296.1at 3194.569 kb on + strand, within Xcc-8004.3296.1at 3194.930 kb on - strand, within Xcc-8004.3296.1at 3194.930 kb on - strand, within Xcc-8004.3296.1at 3195.169 kb on + strandat 3195.169 kb on + strandat 3195.169 kb on + strandat 3195.170 kb on - strandat 3195.170 kb on - strandat 3195.170 kb on - strandat 3195.170 kb on - strandat 3195.170 kb on - strandat 3195.242 kb on + strandat 3195.243 kb on - strandat 3195.243 kb on - strandat 3195.243 kb on - strandat 3195.464 kb on + strand, within Xcc-8004.3297.1at 3195.465 kb on - strand, within Xcc-8004.3297.1at 3195.620 kb on + strand, within Xcc-8004.3297.1at 3195.621 kb on - strand, within Xcc-8004.3297.1at 3195.687 kb on - strand, within Xcc-8004.3297.1at 3195.749 kb on + strand, within Xcc-8004.3297.1at 3195.749 kb on + strand, within Xcc-8004.3297.1at 3195.750 kb on - strand, within Xcc-8004.3297.1at 3195.750 kb on - strand, within Xcc-8004.3297.1at 3195.750 kb on - strand, within Xcc-8004.3297.1at 3195.750 kb on - strand, within Xcc-8004.3297.1at 3195.941 kb on + strand, within Xcc-8004.3297.1at 3195.998 kb on + strand, within Xcc-8004.3297.1at 3195.998 kb on + strand, within Xcc-8004.3297.1at 3196.081 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X
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3,192,734 - Xcc-8004.3295.1 0.18 +0.8
3,192,784 + Xcc-8004.3295.1 0.23 +1.3
3,192,784 + Xcc-8004.3295.1 0.23 +1.1
3,192,784 + Xcc-8004.3295.1 0.23 +0.6
3,192,784 + Xcc-8004.3295.1 0.23 -0.6
3,192,785 - Xcc-8004.3295.1 0.23 -0.7
3,192,785 - Xcc-8004.3295.1 0.23 -2.0
3,192,785 - Xcc-8004.3295.1 0.23 +0.9
3,193,017 + Xcc-8004.3295.1 0.42 -0.4
3,193,018 - Xcc-8004.3295.1 0.42 -1.0
3,193,018 - Xcc-8004.3295.1 0.42 +0.7
3,193,018 - Xcc-8004.3295.1 0.42 +0.1
3,193,018 - Xcc-8004.3295.1 0.42 +1.0
3,193,066 + Xcc-8004.3295.1 0.46 -1.1
3,193,066 + Xcc-8004.3295.1 0.46 +1.8
3,193,066 + Xcc-8004.3295.1 0.46 +0.8
3,193,066 + Xcc-8004.3295.1 0.46 -0.2
3,193,066 + Xcc-8004.3295.1 0.46 +0.4
3,193,066 + Xcc-8004.3295.1 0.46 +0.0
3,193,066 + Xcc-8004.3295.1 0.46 +0.4
3,193,066 + Xcc-8004.3295.1 0.46 -1.2
3,193,066 + Xcc-8004.3295.1 0.46 -0.6
3,193,066 + Xcc-8004.3295.1 0.46 -1.0
3,193,066 + Xcc-8004.3295.1 0.46 +1.1
3,193,066 + Xcc-8004.3295.1 0.46 +0.6
3,193,066 + Xcc-8004.3295.1 0.46 +1.1
3,193,066 + Xcc-8004.3295.1 0.46 +0.6
3,193,066 + Xcc-8004.3295.1 0.46 +0.8
3,193,066 + Xcc-8004.3295.1 0.46 -0.8
3,193,066 + Xcc-8004.3295.1 0.46 +1.1
3,193,066 + Xcc-8004.3295.1 0.46 +0.6
3,193,066 + Xcc-8004.3295.1 0.46 -1.1
3,193,067 - Xcc-8004.3295.1 0.46 -0.8
3,193,067 - Xcc-8004.3295.1 0.46 -0.2
3,193,067 - Xcc-8004.3295.1 0.46 -0.6
3,193,067 - Xcc-8004.3295.1 0.46 +1.3
3,193,067 - Xcc-8004.3295.1 0.46 -1.1
3,193,067 - Xcc-8004.3295.1 0.46 +1.2
3,193,067 - Xcc-8004.3295.1 0.46 +0.9
3,193,067 - Xcc-8004.3295.1 0.46 -0.2
3,193,067 - Xcc-8004.3295.1 0.46 +0.4
3,193,067 - Xcc-8004.3295.1 0.46 +0.2
3,193,067 - Xcc-8004.3295.1 0.46 -0.2
3,193,067 - Xcc-8004.3295.1 0.46 -0.2
3,193,067 - Xcc-8004.3295.1 0.46 +1.1
3,193,067 - Xcc-8004.3295.1 0.46 +1.2
3,193,068 + Xcc-8004.3295.1 0.46 +0.1
3,193,070 + Xcc-8004.3295.1 0.46 -0.5
3,193,270 + Xcc-8004.3295.1 0.63 +0.8
3,193,300 + Xcc-8004.3295.1 0.65 +1.0
3,193,300 + Xcc-8004.3295.1 0.65 -0.2
3,193,301 - Xcc-8004.3295.1 0.66 +1.0
3,193,372 + Xcc-8004.3295.1 0.71 -0.1
3,193,372 + Xcc-8004.3295.1 0.71 +1.1
3,193,372 + Xcc-8004.3295.1 0.71 +0.0
3,193,372 + Xcc-8004.3295.1 0.71 -1.4
3,193,427 + Xcc-8004.3295.1 0.76 +0.6
3,193,428 - Xcc-8004.3295.1 0.76 -2.0
3,193,526 + Xcc-8004.3295.1 0.84 -0.4
3,193,526 + Xcc-8004.3295.1 0.84 -1.0
3,193,527 - Xcc-8004.3295.1 0.84 -1.8
3,193,660 + +1.1
3,193,660 + +1.1
3,193,660 + -0.7
3,193,660 + +0.3
3,193,789 + +0.1
3,193,789 + -0.4
3,193,889 - Xcc-8004.3296.1 0.10 -2.3
3,193,966 - Xcc-8004.3296.1 0.15 -0.7
3,193,966 - Xcc-8004.3296.1 0.15 -0.3
3,193,966 - Xcc-8004.3296.1 0.15 -0.4
3,194,569 + Xcc-8004.3296.1 0.54 -1.0
3,194,930 - Xcc-8004.3296.1 0.78 -1.2
3,194,930 - Xcc-8004.3296.1 0.78 -0.6
3,195,169 + +1.8
3,195,169 + -1.5
3,195,169 + -1.6
3,195,170 - -0.6
3,195,170 - -1.6
3,195,170 - -0.1
3,195,170 - -0.2
3,195,170 - -1.2
3,195,242 + +0.1
3,195,243 - +1.1
3,195,243 - -0.5
3,195,243 - +0.3
3,195,464 + Xcc-8004.3297.1 0.19 -0.1
3,195,465 - Xcc-8004.3297.1 0.19 -0.2
3,195,620 + Xcc-8004.3297.1 0.37 +0.2
3,195,621 - Xcc-8004.3297.1 0.37 +0.3
3,195,687 - Xcc-8004.3297.1 0.45 -0.5
3,195,749 + Xcc-8004.3297.1 0.53 +0.5
3,195,749 + Xcc-8004.3297.1 0.53 +1.2
3,195,750 - Xcc-8004.3297.1 0.53 +0.3
3,195,750 - Xcc-8004.3297.1 0.53 +0.1
3,195,750 - Xcc-8004.3297.1 0.53 -1.9
3,195,750 - Xcc-8004.3297.1 0.53 +0.6
3,195,941 + Xcc-8004.3297.1 0.75 -0.8
3,195,998 + Xcc-8004.3297.1 0.82 -0.9
3,195,998 + Xcc-8004.3297.1 0.82 +1.4
3,196,081 - -0.7

Or see this region's nucleotide sequence