Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.3293.1

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X
3,189,534	+		Xcc-8004.3292.1	0.46	-1.1
3,189,534	+		Xcc-8004.3292.1	0.46	-1.0
3,189,534	+		Xcc-8004.3292.1	0.46	-1.5
3,189,534	+		Xcc-8004.3292.1	0.46	-1.0
3,189,535	-		Xcc-8004.3292.1	0.46	-0.9
3,189,535	-		Xcc-8004.3292.1	0.46	-0.2
3,189,549	-		Xcc-8004.3292.1	0.47	-0.2
3,189,849	+		Xcc-8004.3292.1	0.77	+0.8
3,189,991	-				-0.0
3,189,996	+				-0.1
3,190,192	+				-0.7
3,190,193	-				-0.0
3,190,193	-				+0.0
3,190,196	+				+0.7
3,190,196	+				-0.1
3,190,196	+				+0.8
3,190,197	-				+1.0
3,190,199	+				-1.3
3,190,199	+				+1.1
3,190,199	+				-0.3
3,190,199	+				-0.1
3,190,199	+				+0.8
3,190,199	+				+0.5
3,190,199	+				-0.8
3,190,199	+				-0.3
3,190,199	+				-1.4
3,190,200	-				-1.2
3,190,200	-				+0.4
3,190,200	-				+0.4
3,190,200	-				-1.5
3,190,200	-				-1.2
3,190,200	-				+0.7
3,190,200	-				-1.0
3,190,300	+				-1.1
3,190,300	+				+0.2
3,190,300	+				-1.2
3,190,301	-				-0.8
3,190,301	-				-0.5
3,190,330	+				-1.1
3,190,330	+				+0.0
3,190,330	+				+0.5
3,190,330	+				-0.6
3,190,330	+				-0.8
3,190,330	+				+0.6
3,190,330	+				-0.4
3,190,330	+				-0.5
3,190,330	+				-1.0
3,190,330	+				-1.0
3,190,330	+				-1.2
3,190,330	+				-0.0
3,190,330	+				+1.0
3,190,330	+				+0.2
3,190,330	+				-1.3
3,190,331	-				+0.8
3,190,331	-				-1.3
3,190,331	-				+1.3
3,190,331	-				-0.7
3,190,331	-				-1.0
3,190,331	-				-2.2
3,190,331	-				-0.6
3,190,331	-				+1.1
3,190,480	-		Xcc-8004.3293.1	0.27	-0.2
3,190,480	-		Xcc-8004.3293.1	0.27	+1.3
3,190,693	+		Xcc-8004.3293.1	0.53	-1.3
3,190,693	+		Xcc-8004.3293.1	0.53	+0.5
3,190,693	+		Xcc-8004.3293.1	0.53	+0.9
3,190,693	+		Xcc-8004.3293.1	0.53	+1.7
3,190,693	+		Xcc-8004.3293.1	0.53	-1.8
3,190,693	+		Xcc-8004.3293.1	0.53	+0.0
3,190,694	-		Xcc-8004.3293.1	0.53	+0.6
3,190,694	-		Xcc-8004.3293.1	0.53	-2.3
3,190,755	+		Xcc-8004.3293.1	0.61	-2.0
3,190,755	+		Xcc-8004.3293.1	0.61	+0.4
3,190,755	+		Xcc-8004.3293.1	0.61	-0.1
3,190,755	+		Xcc-8004.3293.1	0.61	-0.5
3,190,755	+		Xcc-8004.3293.1	0.61	-0.3
3,190,756	-		Xcc-8004.3293.1	0.61	-0.7
3,190,756	-		Xcc-8004.3293.1	0.61	+1.2
3,190,756	-		Xcc-8004.3293.1	0.61	+0.7
3,190,756	-		Xcc-8004.3293.1	0.61	+0.5
3,190,756	-		Xcc-8004.3293.1	0.61	+1.5
3,190,756	-		Xcc-8004.3293.1	0.61	-0.6
3,190,867	+		Xcc-8004.3293.1	0.75	-0.5
3,190,867	+		Xcc-8004.3293.1	0.75	+1.0
3,190,868	-		Xcc-8004.3293.1	0.75	-0.8
3,191,363	+		Xcc-8004.3294.1	0.21	-0.6
3,191,363	+		Xcc-8004.3294.1	0.21	-0.7
3,191,363	+		Xcc-8004.3294.1	0.21	-0.6
3,191,363	+		Xcc-8004.3294.1	0.21	-2.1
3,191,364	-		Xcc-8004.3294.1	0.21	-0.2
3,191,364	-		Xcc-8004.3294.1	0.21	+0.3
3,191,364	-		Xcc-8004.3294.1	0.21	+0.2
3,191,364	-		Xcc-8004.3294.1	0.21	+0.6
3,191,675	+		Xcc-8004.3294.1	0.43	+0.6
3,191,675	+		Xcc-8004.3294.1	0.43	-0.9
3,191,675	+		Xcc-8004.3294.1	0.43	-0.2
3,191,675	+		Xcc-8004.3294.1	0.43	-0.6
3,191,745	+		Xcc-8004.3294.1	0.49	+0.8
3,191,901	+		Xcc-8004.3294.1	0.60	-0.2
3,191,963	+		Xcc-8004.3294.1	0.64	-0.3
3,191,963	+		Xcc-8004.3294.1	0.64	-0.2
3,191,964	-		Xcc-8004.3294.1	0.64	+0.4
3,191,964	-		Xcc-8004.3294.1	0.64	-0.8
3,192,047	+		Xcc-8004.3294.1	0.71	-0.8
3,192,048	-		Xcc-8004.3294.1	0.71	+0.8