Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.3215.1 and Xcc-8004.3216.1 are separated by 347 nucleotides Xcc-8004.3216.1 and Xcc-8004.3217.1 overlap by 31 nucleotides Xcc-8004.3217.1 and Xcc-8004.3218.1 overlap by 53 nucleotides Xcc-8004.3218.1 and Xcc-8004.3219.1 are separated by 48 nucleotides Xcc-8004.3219.1 and Xcc-8004.3220.1 overlap by 187 nucleotides
Xcc-8004.3215.1: Xcc-8004.3215.1 - RhsD protein, at 3,125,910 to 3,130,307
Xcc-8004.3215.1
Xcc-8004.3216.1: Xcc-8004.3216.1 - protein of unknown function DUF88, at 3,130,655 to 3,130,939
Xcc-8004.3216.1
Xcc-8004.3217.1: Xcc-8004.3217.1 - Mobile element protein, at 3,130,909 to 3,131,289
Xcc-8004.3217.1
Xcc-8004.3218.1: Xcc-8004.3218.1 - Mobile element protein, at 3,131,237 to 3,131,389
Xcc-8004.3218.1
Xcc-8004.3219.1: Xcc-8004.3219.1 - Mobile element protein, at 3,131,438 to 3,131,701
Xcc-8004.3219.1
Xcc-8004.3220.1: Xcc-8004.3220.1 - Mobile element protein, at 3,131,515 to 3,132,516
Xcc-8004.3220.1
Position (kb)
3131
3132 Strain fitness (log2 ratio)
-1
0
1 at 3130.312 kb on + strand at 3130.356 kb on + strand at 3130.356 kb on + strand at 3130.357 kb on - strand at 3130.357 kb on - strand at 3130.357 kb on - strand at 3130.357 kb on - strand at 3130.357 kb on - strand at 3130.382 kb on + strand at 3130.453 kb on + strand at 3130.453 kb on + strand at 3130.453 kb on + strand at 3130.499 kb on - strand at 3130.865 kb on - strand, within Xcc-8004.3216.1 at 3131.018 kb on - strand, within Xcc-8004.3217.1
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X remove 3,130,312 + +0.1 3,130,356 + -1.0 3,130,356 + -0.7 3,130,357 - +1.0 3,130,357 - -0.4 3,130,357 - -0.4 3,130,357 - -0.1 3,130,357 - -0.7 3,130,382 + +0.5 3,130,453 + -0.1 3,130,453 + +0.3 3,130,453 + -0.5 3,130,499 - +1.0 3,130,865 - Xcc-8004.3216.1 0.74 -1.1 3,131,018 - Xcc-8004.3217.1 0.29 +0.1
Or see this region's nucleotide sequence