Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.3212.1

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X
3,122,036	-				+0.6
3,122,102	+				-0.6
3,122,102	+				+0.5
3,122,109	+				-0.5
3,122,258	+				-0.3
3,122,259	-				-0.6
3,122,262	+				+1.3
3,122,262	+				+0.0
3,122,263	-				-1.2
3,122,332	-				-2.0
3,122,370	+				+1.5
3,122,370	+				-1.2
3,122,370	+				-0.2
3,122,378	-				+0.6
3,122,432	+				-0.3
3,122,525	+				+0.2
3,122,525	+				+0.7
3,122,525	+				-1.0
3,122,529	+				-0.4
3,122,529	+				+0.2
3,122,529	+				+0.9
3,122,530	-				+0.9
3,122,530	-				-0.4
3,122,530	-				-0.3
3,122,540	+				+0.7
3,122,541	-				-1.8
3,122,744	+				-0.4
3,122,744	+				-0.1
3,122,745	-				+0.2
3,122,946	+		Xcc-8004.3211.1	0.82	-0.7
3,122,946	+		Xcc-8004.3211.1	0.82	+0.3
3,122,946	+		Xcc-8004.3211.1	0.82	-0.2
3,122,946	+		Xcc-8004.3211.1	0.82	+0.5
3,122,947	-		Xcc-8004.3211.1	0.82	-0.8
3,123,384	+		Xcc-8004.3212.1	0.71	-1.0
3,123,384	+		Xcc-8004.3212.1	0.71	-1.1
3,123,385	-		Xcc-8004.3212.1	0.71	-0.2
3,123,385	-		Xcc-8004.3212.1	0.71	+0.4
3,123,459	+		Xcc-8004.3212.1	0.84	-0.4
3,123,459	+		Xcc-8004.3212.1	0.84	-0.4
3,123,459	+		Xcc-8004.3212.1	0.84	-1.0
3,123,460	-		Xcc-8004.3212.1	0.84	-1.0
3,123,591	+				+0.2
3,123,591	+				-0.2
3,123,592	-				+0.2
3,123,592	-				-2.0
3,123,600	+				-2.2
3,123,601	-				-0.6
3,123,601	-				-0.6
3,123,601	-				-1.0
3,123,601	-				-2.3
3,123,625	-				-0.9
3,123,625	-				+0.2
3,123,625	-				-0.7
3,123,625	-				-1.5
3,123,666	-				-0.9
3,123,712	+				-0.4
3,123,712	+				+0.7
3,123,712	+				-0.2
3,123,713	-				-1.2
3,123,713	-				+0.3
3,123,713	-				-0.8
3,123,713	-				-1.3
3,123,753	-				+0.1
3,123,820	+				+1.2
3,123,820	+				-0.1
3,123,873	+				-1.4
3,123,873	+				-1.7
3,123,873	+				+1.5
3,123,873	+				-0.9
3,123,873	+				-0.0
3,123,873	+				-0.3
3,123,873	+				-0.4
3,123,874	-				-1.6
3,123,874	-				+0.5
3,123,874	-				+0.6
3,123,874	-				-1.6
3,123,874	-				-0.0
3,123,885	-				-0.4
3,123,926	-				+1.9
3,123,986	+				-0.0
3,124,024	+				+1.2
3,124,049	+				+0.5
3,124,049	+				+1.5
3,124,049	+				+1.1
3,124,050	-				+0.4
3,124,050	-				+1.9
3,124,050	-				-0.4
3,124,050	-				+0.0
3,124,054	-				-0.5
3,124,054	-				+0.7
3,124,063	-				+0.2
3,124,107	+				-0.5
3,124,108	-				-0.3
3,124,115	+				-2.3
3,124,115	+				-1.1
3,124,115	+				+0.1
3,124,188	-				+0.5