Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.3087.1

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X
3,022,945	-				-0.7
3,022,945	-				-0.5
3,022,945	-				+0.6
3,022,945	-				-0.3
3,022,945	-				-1.7
3,022,945	-				-0.3
3,022,945	-				-0.7
3,022,945	-				-1.4
3,022,945	-				-1.0
3,022,945	-				+0.0
3,022,945	-				-0.3
3,022,994	+				-0.9
3,022,994	+				-1.1
3,022,994	+				-0.8
3,022,994	+				+0.0
3,022,994	+				-1.1
3,022,994	+				-0.3
3,022,994	+				-1.3
3,022,994	+				-0.3
3,022,995	-				+0.6
3,022,995	-				+0.7
3,022,995	-				+0.6
3,022,995	-				-0.3
3,022,995	-				+0.8
3,022,995	-				-0.6
3,022,995	-				+0.2
3,023,021	+				+0.4
3,023,021	+				-0.5
3,023,021	+				-0.5
3,023,021	+				-2.1
3,023,021	+				-0.5
3,023,021	+				-0.2
3,023,021	+				-2.4
3,023,021	+				-1.1
3,023,021	+				+0.1
3,023,021	+				-0.2
3,023,021	+				-0.1
3,023,021	+				-2.5
3,023,021	+				+0.2
3,023,021	+				-0.5
3,023,021	+				-0.9
3,023,021	+				+0.3
3,023,021	+				+0.8
3,023,021	+				+0.3
3,023,021	+				-1.4
3,023,021	+				-0.3
3,023,021	+				-1.7
3,023,021	+				+1.5
3,023,021	+				+0.6
3,023,022	-				+0.1
3,023,022	-				-1.0
3,023,022	-				+1.3
3,023,022	-				+0.2
3,023,022	-				-0.7
3,023,022	-				-1.7
3,023,022	-				-1.9
3,023,022	-				+0.4
3,023,022	-				-0.1
3,023,022	-				-0.2
3,023,022	-				-1.0
3,023,022	-				-1.6
3,023,022	-				-1.3
3,023,022	-				-0.7
3,023,022	-				-2.0
3,023,022	-				-0.2
3,023,022	-				-2.1
3,023,350	-		Xcc-8004.3086.1	0.52	+3.5
3,023,391	+		Xcc-8004.3086.1	0.59	+1.3
3,023,392	-		Xcc-8004.3086.1	0.59	+1.5
3,023,647	-				+1.3
3,023,647	-				-0.1
3,023,647	-				-1.6
3,023,752	+		Xcc-8004.3087.1	0.26	-0.9
3,023,753	-		Xcc-8004.3087.1	0.26	-0.7
3,023,832	+		Xcc-8004.3087.1	0.48	-2.7
3,023,832	+		Xcc-8004.3087.1	0.48	-0.8
3,023,833	-		Xcc-8004.3087.1	0.49	-1.5
3,023,881	+		Xcc-8004.3087.1	0.62	+0.9
3,023,881	+		Xcc-8004.3087.1	0.62	-0.3
3,023,881	+		Xcc-8004.3087.1	0.62	-0.3
3,023,881	+		Xcc-8004.3087.1	0.62	-1.4
3,023,882	-		Xcc-8004.3087.1	0.63	-0.7
3,023,882	-		Xcc-8004.3087.1	0.63	-2.2
3,023,882	-		Xcc-8004.3087.1	0.63	-0.2
3,023,882	-		Xcc-8004.3087.1	0.63	-1.1
3,023,882	-		Xcc-8004.3087.1	0.63	+0.5
3,023,983	+				+0.3
3,023,983	+				-0.8
3,023,983	+				-0.1
3,023,983	+				+1.0
3,023,983	+				-0.7
3,023,983	+				-1.8
3,023,983	+				+1.0
3,023,983	+				+0.6
3,023,983	+				-1.1
3,023,983	+				+0.8
3,023,984	-				+0.0
3,023,984	-				-0.7
3,023,984	-				+1.0
3,023,984	-				+0.5
3,024,064	+				+0.4
3,024,064	+				+0.2
3,024,162	+		Xcc-8004.3088.1	0.23	+1.8
3,024,162	+		Xcc-8004.3088.1	0.23	-0.1
3,024,162	+		Xcc-8004.3088.1	0.23	-0.8
3,024,162	+		Xcc-8004.3088.1	0.23	-1.4
3,024,162	+		Xcc-8004.3088.1	0.23	+0.8
3,024,162	+		Xcc-8004.3088.1	0.23	+0.7
3,024,162	+		Xcc-8004.3088.1	0.23	-0.2
3,024,162	+		Xcc-8004.3088.1	0.23	-0.7
3,024,162	+		Xcc-8004.3088.1	0.23	-0.6
3,024,162	+		Xcc-8004.3088.1	0.23	-0.2
3,024,163	-		Xcc-8004.3088.1	0.23	+0.9
3,024,163	-		Xcc-8004.3088.1	0.23	+1.9
3,024,163	-		Xcc-8004.3088.1	0.23	-1.4
3,024,168	+		Xcc-8004.3088.1	0.24	-1.0
3,024,168	+		Xcc-8004.3088.1	0.24	+0.7
3,024,168	+		Xcc-8004.3088.1	0.24	+1.6
3,024,169	-		Xcc-8004.3088.1	0.24	+0.9
3,024,390	+		Xcc-8004.3088.1	0.70	-0.4
3,024,390	+		Xcc-8004.3088.1	0.70	-0.4
3,024,390	+		Xcc-8004.3088.1	0.70	+0.1
3,024,390	+		Xcc-8004.3088.1	0.70	-1.3
3,024,390	+		Xcc-8004.3088.1	0.70	-1.3
3,024,390	+		Xcc-8004.3088.1	0.70	-0.0
3,024,390	+		Xcc-8004.3088.1	0.70	+0.5
3,024,391	-		Xcc-8004.3088.1	0.70	-0.9
3,024,391	-		Xcc-8004.3088.1	0.70	-0.5
3,024,391	-		Xcc-8004.3088.1	0.70	-1.1
3,024,391	-		Xcc-8004.3088.1	0.70	-0.1
3,024,391	-		Xcc-8004.3088.1	0.70	-1.0
3,024,391	-		Xcc-8004.3088.1	0.70	-2.3
3,024,637	+				-0.4
3,024,637	+				+0.2
3,024,637	+				+0.7
3,024,637	+				-1.2
3,024,638	-				+0.3
3,024,638	-				+0.4
3,024,638	-				+0.4
3,024,638	-				+0.3
3,024,638	-				+0.5
3,024,638	-				+0.1
3,024,638	-				+3.2
3,024,904	+		Xcc-8004.3089.1	0.21	+0.9
3,024,905	-		Xcc-8004.3089.1	0.21	+0.0
3,024,905	-		Xcc-8004.3089.1	0.21	+0.7
3,024,905	-		Xcc-8004.3089.1	0.21	+0.1