Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.2989.1

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X
2,926,546	+				+0.8
2,926,547	-				-0.7
2,926,547	-				-0.9
2,926,547	-				+1.3
2,926,592	+				-0.7
2,926,592	+				+1.4
2,926,592	+				-1.7
2,926,592	+				+1.5
2,926,592	+				-0.4
2,926,592	+				-1.7
2,926,593	-				-1.6
2,926,593	-				+0.6
2,926,593	-				+1.0
2,926,593	-				+0.8
2,926,659	+				-1.9
2,926,660	-				-0.4
2,926,667	+				-0.2
2,926,667	+				+1.3
2,926,667	+				-0.1
2,926,667	+				+0.2
2,926,700	-				+0.8
2,926,700	-				+0.1
2,926,713	+				-0.6
2,926,713	+				+2.2
2,926,713	+				-1.7
2,926,713	+				-0.1
2,926,713	+				+1.3
2,926,713	+				+0.3
2,926,713	+				-0.6
2,926,713	+				+1.1
2,926,713	+				+0.2
2,926,713	+				-2.0
2,926,713	+				+0.6
2,926,714	-				-1.3
2,926,714	-				-2.2
2,926,714	-				-0.5
2,926,714	-				-1.4
2,926,714	-				-0.0
2,926,714	-				-2.0
2,926,714	-				+0.3
2,926,714	-				-0.5
2,926,714	-				-0.4
2,926,714	-				+0.1
2,926,714	-				-0.3
2,926,714	-				-0.7
2,926,760	+		Xcc-8004.2986.1	0.15	+0.3
2,926,761	-		Xcc-8004.2986.1	0.15	+1.0
2,926,761	-		Xcc-8004.2986.1	0.15	-1.4
2,926,761	-		Xcc-8004.2986.1	0.15	+0.4
2,926,761	-		Xcc-8004.2986.1	0.15	-0.8
2,926,869	+		Xcc-8004.2986.1	0.50	+0.6
2,926,869	+		Xcc-8004.2986.1	0.50	+0.9
2,926,869	+		Xcc-8004.2986.1	0.50	+0.5
2,926,869	+		Xcc-8004.2986.1	0.50	+1.6
2,926,903	+		Xcc-8004.2986.1	0.61	+0.3
2,926,903	+		Xcc-8004.2986.1	0.61	-0.7
2,926,903	+		Xcc-8004.2986.1	0.61	-1.2
2,926,903	+		Xcc-8004.2986.1	0.61	-1.4
2,926,903	+		Xcc-8004.2986.1	0.61	-0.8
2,926,903	+		Xcc-8004.2986.1	0.61	-1.5
2,926,903	+		Xcc-8004.2986.1	0.61	+2.0
2,926,903	+		Xcc-8004.2986.1	0.61	+1.2
2,926,903	+		Xcc-8004.2986.1	0.61	+0.6
2,926,903	+		Xcc-8004.2986.1	0.61	-0.1
2,926,903	+		Xcc-8004.2986.1	0.61	+0.5
2,926,904	-		Xcc-8004.2986.1	0.61	-0.4
2,926,904	-		Xcc-8004.2986.1	0.61	-0.9
2,926,904	-		Xcc-8004.2986.1	0.61	+0.7
2,926,904	-		Xcc-8004.2986.1	0.61	-0.3
2,926,904	-		Xcc-8004.2986.1	0.61	+0.2
2,926,904	-		Xcc-8004.2986.1	0.61	+0.8
2,926,904	-		Xcc-8004.2986.1	0.61	-0.4
2,926,904	-		Xcc-8004.2986.1	0.61	+0.6
2,926,904	-		Xcc-8004.2986.1	0.61	-0.7
2,926,904	-		Xcc-8004.2986.1	0.61	+0.4
2,926,904	-		Xcc-8004.2986.1	0.61	+0.9
2,926,904	-		Xcc-8004.2986.1	0.61	+0.0
2,926,904	-		Xcc-8004.2986.1	0.61	-2.3
2,926,904	-		Xcc-8004.2986.1	0.61	+0.3
2,926,904	-		Xcc-8004.2986.1	0.61	-0.5
2,926,916	+		Xcc-8004.2986.1	0.65	+0.8
2,926,916	+		Xcc-8004.2986.1	0.65	-1.6
2,926,916	+		Xcc-8004.2986.1	0.65	-0.2
2,926,916	+		Xcc-8004.2986.1	0.65	+0.7
2,926,916	+		Xcc-8004.2986.1	0.65	-1.5
2,926,916	+		Xcc-8004.2986.1	0.65	+0.8
2,926,916	+		Xcc-8004.2986.1	0.65	+1.4
2,926,916	+		Xcc-8004.2986.1	0.65	+0.5
2,926,916	+		Xcc-8004.2986.1	0.65	-0.8
2,926,916	+		Xcc-8004.2986.1	0.65	+0.5
2,926,916	+		Xcc-8004.2986.1	0.65	-0.2
2,926,916	+		Xcc-8004.2986.1	0.65	+0.6
2,926,916	+		Xcc-8004.2986.1	0.65	-0.7
2,926,916	+		Xcc-8004.2986.1	0.65	+1.0
2,926,917	-		Xcc-8004.2986.1	0.65	+0.9
2,926,917	-		Xcc-8004.2986.1	0.65	-1.2
2,926,917	-		Xcc-8004.2986.1	0.65	-1.5
2,926,917	-		Xcc-8004.2986.1	0.65	-1.0
2,926,917	-		Xcc-8004.2986.1	0.65	+0.0
2,926,917	-		Xcc-8004.2986.1	0.65	-2.1
2,926,917	-		Xcc-8004.2986.1	0.65	+0.2
2,926,917	-		Xcc-8004.2986.1	0.65	-1.3
2,926,917	-		Xcc-8004.2986.1	0.65	-0.1
2,926,917	-		Xcc-8004.2986.1	0.65	-0.3
2,926,917	-		Xcc-8004.2986.1	0.65	+0.2
2,926,917	-		Xcc-8004.2986.1	0.65	-0.7
2,926,917	-		Xcc-8004.2986.1	0.65	-0.8
2,926,917	-		Xcc-8004.2986.1	0.65	-0.2
2,926,917	-		Xcc-8004.2986.1	0.65	+0.9
2,926,972	+				-0.8
2,926,972	+				-1.0
2,926,972	+				-0.9
2,926,972	+				+0.7
2,926,972	+				+0.7
2,926,972	+				-0.7
2,926,972	+				-1.0
2,926,973	-				-0.4
2,926,973	-				-0.9
2,926,973	-				-0.5
2,926,973	-				-0.1
2,926,973	-				+0.0
2,926,973	-				-0.9
2,927,023	+				-0.4
2,927,023	+				+1.5
2,927,023	+				-1.9
2,927,023	+				+0.2
2,927,023	+				+0.1
2,927,024	-				-1.7
2,927,083	+		Xcc-8004.2987.1	0.26	+1.0
2,927,084	-		Xcc-8004.2987.1	0.26	+0.8
2,927,201	+		Xcc-8004.2987.1	0.49	+0.0
2,927,201	+		Xcc-8004.2987.1	0.49	+1.5
2,927,201	+		Xcc-8004.2987.1	0.49	-0.5
2,927,202	-		Xcc-8004.2987.1	0.49	+0.5
2,927,282	+		Xcc-8004.2987.1	0.64	+1.0
2,927,283	-		Xcc-8004.2987.1	0.64	-0.0
2,927,283	-		Xcc-8004.2987.1	0.64	+0.0
2,927,423	+				-1.3
2,927,423	+				-0.8
2,927,423	+				+1.9
2,927,423	+				+0.0
2,927,423	+				+0.1
2,927,424	-				+0.4
2,927,424	-				-1.8
2,927,424	-				-0.5
2,927,424	-				-0.7
2,927,424	-				+0.3
2,927,424	-				-0.8
2,927,507	+				-0.5
2,927,507	+				-1.4
2,927,508	-				-1.4
2,927,522	-				-0.7
2,927,555	+				+0.2
2,927,556	-				-0.3
2,927,556	-				+0.9
2,927,557	+		Xcc-8004.2989.1	0.10	+1.2
2,927,557	+		Xcc-8004.2989.1	0.10	-0.5
2,927,557	+		Xcc-8004.2989.1	0.10	-2.2
2,927,558	-		Xcc-8004.2989.1	0.11	-1.0
2,927,558	-		Xcc-8004.2989.1	0.11	+0.6
2,927,558	-		Xcc-8004.2989.1	0.11	-0.8
2,927,558	-		Xcc-8004.2989.1	0.11	-1.1
2,927,664	+		Xcc-8004.2989.1	0.57	-0.9
2,927,697	-		Xcc-8004.2989.1	0.71	-0.3
2,927,712	-		Xcc-8004.2989.1	0.78	+0.2
2,927,750	+				+0.6
2,927,750	+				-0.2
2,927,750	+				+0.2
2,927,750	+				-0.1
2,927,750	+				-0.7
2,927,750	+				+0.1
2,927,750	+				+0.0
2,927,751	-				-0.7
2,927,751	-				-1.7
2,927,751	-				+0.9
2,927,751	-				-0.1
2,927,751	-				+1.1
2,927,754	+				-0.3
2,927,754	+				-1.2
2,927,754	+				-1.5
2,927,754	+				-0.8
2,927,754	+				-0.9
2,927,754	+				+0.2
2,927,754	+				+0.8
2,927,754	+				+0.4
2,927,754	+				-0.9
2,927,754	+				-1.0
2,927,754	+				-1.0
2,927,754	+				+0.9
2,927,754	+				-3.3
2,927,754	+				+0.2
2,927,755	-				-0.1
2,927,755	-				-1.6
2,927,755	-				-0.5
2,927,755	-				+0.5
2,927,755	-				-0.7
2,927,755	-				+0.6
2,927,755	-				+0.8
2,927,755	-				-0.9
2,927,755	-				+0.3
2,927,755	-				+0.2
2,927,764	+				-2.3
2,927,764	+				-0.7
2,927,764	+				-0.7
2,927,764	+				-0.2
2,927,765	-				-0.5
2,927,765	-				-1.0
2,927,765	-				+0.4
2,927,765	-				-0.6
2,927,966	+		Xcc-8004.2990.1	0.25	+0.1
2,927,966	+		Xcc-8004.2990.1	0.25	-0.8
2,927,966	+		Xcc-8004.2990.1	0.25	+0.9
2,927,966	+		Xcc-8004.2990.1	0.25	+0.3
2,927,966	+		Xcc-8004.2990.1	0.25	-1.2
2,927,966	+		Xcc-8004.2990.1	0.25	+0.7
2,927,967	-		Xcc-8004.2990.1	0.25	-1.5
2,927,967	-		Xcc-8004.2990.1	0.25	+0.2
2,927,967	-		Xcc-8004.2990.1	0.25	+1.9
2,927,967	-		Xcc-8004.2990.1	0.25	-0.2
2,927,967	-		Xcc-8004.2990.1	0.25	-0.1
2,927,977	+		Xcc-8004.2990.1	0.26	-1.4
2,927,977	+		Xcc-8004.2990.1	0.26	-0.2
2,927,977	+		Xcc-8004.2990.1	0.26	-0.9
2,927,977	+		Xcc-8004.2990.1	0.26	+0.4
2,927,977	+		Xcc-8004.2990.1	0.26	-0.6
2,927,977	+		Xcc-8004.2990.1	0.26	-2.7
2,927,978	-		Xcc-8004.2990.1	0.27	-0.1
2,927,978	-		Xcc-8004.2990.1	0.27	-0.3
2,927,978	-		Xcc-8004.2990.1	0.27	-0.8
2,927,978	-		Xcc-8004.2990.1	0.27	+1.7
2,928,026	+		Xcc-8004.2990.1	0.32	-0.2
2,928,026	+		Xcc-8004.2990.1	0.32	+0.6
2,928,026	+		Xcc-8004.2990.1	0.32	+1.1
2,928,026	+		Xcc-8004.2990.1	0.32	-0.3
2,928,026	+		Xcc-8004.2990.1	0.32	+0.2
2,928,026	+		Xcc-8004.2990.1	0.32	+0.9
2,928,026	+		Xcc-8004.2990.1	0.32	-1.4
2,928,026	+		Xcc-8004.2990.1	0.32	-1.7
2,928,026	+		Xcc-8004.2990.1	0.32	+1.1
2,928,026	+		Xcc-8004.2990.1	0.32	+0.5
2,928,026	+		Xcc-8004.2990.1	0.32	-0.9
2,928,026	+		Xcc-8004.2990.1	0.32	-0.3
2,928,027	-		Xcc-8004.2990.1	0.32	-1.7
2,928,027	-		Xcc-8004.2990.1	0.32	+0.5
2,928,027	-		Xcc-8004.2990.1	0.32	+0.3
2,928,027	-		Xcc-8004.2990.1	0.32	+1.7
2,928,027	-		Xcc-8004.2990.1	0.32	+0.2
2,928,027	-		Xcc-8004.2990.1	0.32	-0.9
2,928,027	-		Xcc-8004.2990.1	0.32	+0.5
2,928,027	-		Xcc-8004.2990.1	0.32	+0.7
2,928,027	-		Xcc-8004.2990.1	0.32	-1.9
2,928,027	-		Xcc-8004.2990.1	0.32	+0.3
2,928,027	-		Xcc-8004.2990.1	0.32	-0.7
2,928,027	-		Xcc-8004.2990.1	0.32	+0.5
2,928,115	+		Xcc-8004.2990.1	0.43	+0.4
2,928,115	+		Xcc-8004.2990.1	0.43	+2.1
2,928,149	+		Xcc-8004.2990.1	0.47	+2.4
2,928,149	+		Xcc-8004.2990.1	0.47	+0.5
2,928,149	+		Xcc-8004.2990.1	0.47	-1.1
2,928,149	+		Xcc-8004.2990.1	0.47	-0.5
2,928,149	+		Xcc-8004.2990.1	0.47	-1.0
2,928,149	+		Xcc-8004.2990.1	0.47	-0.2
2,928,149	+		Xcc-8004.2990.1	0.47	+0.1
2,928,149	+		Xcc-8004.2990.1	0.47	-0.5
2,928,149	+		Xcc-8004.2990.1	0.47	+0.5
2,928,149	+		Xcc-8004.2990.1	0.47	-0.8
2,928,149	+		Xcc-8004.2990.1	0.47	-0.0
2,928,150	-		Xcc-8004.2990.1	0.47	-0.7
2,928,150	-		Xcc-8004.2990.1	0.47	+0.5
2,928,150	-		Xcc-8004.2990.1	0.47	-0.2
2,928,150	-		Xcc-8004.2990.1	0.47	-1.4
2,928,175	+		Xcc-8004.2990.1	0.50	+0.2
2,928,176	-		Xcc-8004.2990.1	0.50	-0.7
2,928,176	-		Xcc-8004.2990.1	0.50	-0.0
2,928,176	-		Xcc-8004.2990.1	0.50	-0.5
2,928,195	+		Xcc-8004.2990.1	0.52	+0.0
2,928,195	+		Xcc-8004.2990.1	0.52	-2.0
2,928,195	+		Xcc-8004.2990.1	0.52	-1.2
2,928,195	+		Xcc-8004.2990.1	0.52	-1.7
2,928,195	+		Xcc-8004.2990.1	0.52	+0.1
2,928,195	+		Xcc-8004.2990.1	0.52	+1.4
2,928,195	+		Xcc-8004.2990.1	0.52	-1.7
2,928,195	+		Xcc-8004.2990.1	0.52	-1.3
2,928,195	+		Xcc-8004.2990.1	0.52	-0.8
2,928,195	+		Xcc-8004.2990.1	0.52	-1.8
2,928,195	+		Xcc-8004.2990.1	0.52	+0.5
2,928,196	-		Xcc-8004.2990.1	0.52	-0.7
2,928,196	-		Xcc-8004.2990.1	0.52	+0.6
2,928,196	-		Xcc-8004.2990.1	0.52	-0.4
2,928,196	-		Xcc-8004.2990.1	0.52	+0.9
2,928,196	-		Xcc-8004.2990.1	0.52	+1.5
2,928,196	-		Xcc-8004.2990.1	0.52	+0.4
2,928,196	-		Xcc-8004.2990.1	0.52	-1.5
2,928,196	-		Xcc-8004.2990.1	0.52	+0.6
2,928,196	-		Xcc-8004.2990.1	0.52	-0.3
2,928,196	-		Xcc-8004.2990.1	0.52	-0.8
2,928,196	-		Xcc-8004.2990.1	0.52	+0.3
2,928,278	+		Xcc-8004.2990.1	0.62	+0.7
2,928,278	+		Xcc-8004.2990.1	0.62	+0.0
2,928,278	+		Xcc-8004.2990.1	0.62	+0.5
2,928,278	+		Xcc-8004.2990.1	0.62	-0.2
2,928,278	+		Xcc-8004.2990.1	0.62	+0.7
2,928,278	+		Xcc-8004.2990.1	0.62	-0.3
2,928,278	+		Xcc-8004.2990.1	0.62	-1.2
2,928,278	+		Xcc-8004.2990.1	0.62	+0.7
2,928,278	+		Xcc-8004.2990.1	0.62	+1.3
2,928,278	+		Xcc-8004.2990.1	0.62	+1.0
2,928,278	+		Xcc-8004.2990.1	0.62	-0.4
2,928,278	+		Xcc-8004.2990.1	0.62	-0.0
2,928,279	-		Xcc-8004.2990.1	0.62	+1.6
2,928,279	-		Xcc-8004.2990.1	0.62	-0.3
2,928,279	-		Xcc-8004.2990.1	0.62	+1.1
2,928,279	-		Xcc-8004.2990.1	0.62	+0.0
2,928,279	-		Xcc-8004.2990.1	0.62	-0.5
2,928,279	-		Xcc-8004.2990.1	0.62	-0.9
2,928,279	-		Xcc-8004.2990.1	0.62	+0.2
2,928,279	-		Xcc-8004.2990.1	0.62	+0.7
2,928,279	-		Xcc-8004.2990.1	0.62	+0.9
2,928,279	-		Xcc-8004.2990.1	0.62	-0.2
2,928,477	+		Xcc-8004.2990.1	0.86	+0.3
2,928,477	+		Xcc-8004.2990.1	0.86	-0.4
2,928,477	+		Xcc-8004.2990.1	0.86	-1.4
2,928,478	-		Xcc-8004.2990.1	0.86	-1.2
2,928,478	-		Xcc-8004.2990.1	0.86	-0.6
2,928,526	-				-0.5
2,928,541	+				+1.3
2,928,541	+				-2.1
2,928,592	+				-1.2
2,928,592	+				-1.9
2,928,592	+				-0.9
2,928,592	+				-0.6
2,928,593	-				+0.2
2,928,602	+				-0.2
2,928,602	+				-0.1
2,928,603	-				-0.2
2,928,603	-				-2.1
2,928,628	+				-1.9
2,928,628	+				+1.3
2,928,628	+				+0.7
2,928,628	+				-1.2
2,928,628	+				+0.4
2,928,628	+				-0.2
2,928,628	+				-2.2
2,928,628	+				-0.9
2,928,629	-				-0.1
2,928,629	-				+2.2
2,928,629	-				-1.1
2,928,629	-				-0.5
2,928,629	-				-0.7
2,928,629	-				+1.1
2,928,667	-				+0.2
2,928,694	+				-2.3
2,928,694	+				-0.6
2,928,694	+				+2.5
2,928,694	+				+0.6
2,928,694	+				-0.4
2,928,695	-				+1.5
2,928,695	-				+1.5
2,928,695	-				+1.1
2,928,695	-				-1.3
2,928,746	-				+0.2
2,928,759	+				+1.5
2,928,759	+				-1.0
2,928,759	+				-0.3
2,928,759	+				+1.0
2,928,759	+				+0.7
2,928,760	-				-0.5
2,928,760	-				-0.5
2,928,760	-				+0.8
2,928,760	-				+0.4
2,928,760	-				-2.5
2,928,760	-				-1.3
2,928,760	-				+0.0
2,928,760	-				+0.8
2,928,760	-				+0.4
2,928,760	-				-0.5
2,928,760	-				-0.3