Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.2957.1

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X
2,879,540	-		Xcc-8004.2956.1	0.16	+0.6
2,879,540	-		Xcc-8004.2956.1	0.16	+0.5
2,879,934	+		Xcc-8004.2956.1	0.57	-0.3
2,880,458	+				-0.3
2,880,578	+				-0.3
2,880,578	+				-0.3
2,880,578	+				+0.8
2,880,579	-				-1.7
2,880,579	-				-1.5
2,880,579	-				+2.1
2,880,579	-				+0.3
2,880,815	+		Xcc-8004.2957.1	0.19	-1.9
2,880,816	-		Xcc-8004.2957.1	0.19	-2.3
2,880,816	-		Xcc-8004.2957.1	0.19	-0.3
2,880,869	+		Xcc-8004.2957.1	0.21	+1.1
2,880,869	+		Xcc-8004.2957.1	0.21	+0.9
2,880,870	-		Xcc-8004.2957.1	0.21	-1.9
2,880,873	+		Xcc-8004.2957.1	0.21	+0.1
2,880,873	+		Xcc-8004.2957.1	0.21	-0.9
2,880,874	-		Xcc-8004.2957.1	0.21	-0.6
2,880,874	-		Xcc-8004.2957.1	0.21	+0.1
2,881,043	+		Xcc-8004.2957.1	0.28	-0.8
2,881,164	+		Xcc-8004.2957.1	0.33	-1.0
2,881,164	+		Xcc-8004.2957.1	0.33	-0.8
2,881,164	+		Xcc-8004.2957.1	0.33	-0.8
2,881,165	-		Xcc-8004.2957.1	0.33	-1.1
2,881,165	-		Xcc-8004.2957.1	0.33	-0.5
2,881,531	-		Xcc-8004.2957.1	0.47	-1.3
2,881,531	-		Xcc-8004.2957.1	0.47	-1.1
2,881,953	+		Xcc-8004.2957.1	0.64	-0.1
2,881,953	+		Xcc-8004.2957.1	0.64	+0.6
2,881,953	+		Xcc-8004.2957.1	0.64	-1.3
2,881,954	-		Xcc-8004.2957.1	0.64	-0.5
2,881,954	-		Xcc-8004.2957.1	0.64	+0.2
2,881,998	+		Xcc-8004.2957.1	0.66	-0.5
2,881,998	+		Xcc-8004.2957.1	0.66	-1.2
2,881,998	+		Xcc-8004.2957.1	0.66	-1.1
2,881,998	+		Xcc-8004.2957.1	0.66	-1.5
2,881,998	+		Xcc-8004.2957.1	0.66	-0.9
2,881,999	-		Xcc-8004.2957.1	0.66	+0.6
2,881,999	-		Xcc-8004.2957.1	0.66	-0.5
2,881,999	-		Xcc-8004.2957.1	0.66	-0.9
2,881,999	-		Xcc-8004.2957.1	0.66	+0.1
2,882,030	+		Xcc-8004.2957.1	0.67	+1.3
2,882,030	+		Xcc-8004.2957.1	0.67	-2.0
2,882,054	+		Xcc-8004.2957.1	0.68	-1.6
2,882,423	+		Xcc-8004.2957.1	0.83	+0.5
2,882,784	+				+1.0
2,882,784	+				+1.3
2,882,784	+				-0.7
2,882,785	-				-0.9
2,882,891	-				+0.5
2,882,891	-				+0.9
2,882,991	-				-0.5
2,882,991	-				-0.4
2,883,002	+				-0.1
2,883,002	+				-1.9
2,883,002	+				-1.5
2,883,003	-				+0.6
2,883,179	-				-0.9
2,883,179	-				-0.9
2,883,179	-				+2.5
2,883,310	-				-2.1
2,883,310	-				-1.1
2,883,310	-				-1.6
2,883,357	-				-0.6
2,883,516	+				+1.5
2,883,516	+				+0.4
2,883,516	+				-0.3
2,883,517	-				-1.6
2,883,566	-				-0.2
2,883,566	-				-0.2
2,883,609	+				-1.5
2,883,609	+				-0.7
2,883,609	+				+0.1
2,883,609	+				-0.8
2,883,609	+				-1.6
2,883,646	-		Xcc-8004.2958.1	0.18	-2.3