Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.29.1

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.28.1 and Xcc-8004.29.1 are separated by 257 nucleotidesXcc-8004.29.1 and Xcc-8004.30.1 are separated by 98 nucleotidesXcc-8004.30.1 and Xcc-8004.31.1 are separated by 58 nucleotides Xcc-8004.28.1: Xcc-8004.28.1 - Carboxyl-terminal protease (EC 3.4.21.102), at 24,035 to 25,522 Xcc-8004.28.1 Xcc-8004.29.1: Xcc-8004.29.1 - Cell wall endopeptidase, family M23/M37, at 25,780 to 27,069 Xcc-8004.29.1 Xcc-8004.30.1: Xcc-8004.30.1 - FIG01212518: hypothetical protein, at 27,168 to 27,824 Xcc-8004.30.1 Xcc-8004.31.1: Xcc-8004.31.1 - Peptidase, at 27,883 to 29,667 Xcc-8004.31.1 Position (kb) 25 26 27 28Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 24.897 kb on + strand, within Xcc-8004.28.1at 24.897 kb on + strand, within Xcc-8004.28.1at 24.897 kb on + strand, within Xcc-8004.28.1at 24.897 kb on + strand, within Xcc-8004.28.1at 24.897 kb on + strand, within Xcc-8004.28.1at 24.897 kb on + strand, within Xcc-8004.28.1at 24.897 kb on + strand, within Xcc-8004.28.1at 24.897 kb on + strand, within Xcc-8004.28.1at 24.897 kb on + strand, within Xcc-8004.28.1at 24.897 kb on + strand, within Xcc-8004.28.1at 24.897 kb on + strand, within Xcc-8004.28.1at 24.898 kb on - strand, within Xcc-8004.28.1at 24.898 kb on - strand, within Xcc-8004.28.1at 25.197 kb on + strand, within Xcc-8004.28.1at 25.198 kb on - strand, within Xcc-8004.28.1at 25.198 kb on - strand, within Xcc-8004.28.1at 25.248 kb on + strand, within Xcc-8004.28.1at 25.248 kb on + strand, within Xcc-8004.28.1at 25.248 kb on + strand, within Xcc-8004.28.1at 25.249 kb on - strand, within Xcc-8004.28.1at 25.249 kb on - strand, within Xcc-8004.28.1at 25.329 kb on + strand, within Xcc-8004.28.1at 25.329 kb on + strand, within Xcc-8004.28.1at 25.329 kb on + strand, within Xcc-8004.28.1at 25.329 kb on + strand, within Xcc-8004.28.1at 25.329 kb on + strand, within Xcc-8004.28.1at 25.330 kb on - strand, within Xcc-8004.28.1at 25.330 kb on - strand, within Xcc-8004.28.1at 25.330 kb on - strand, within Xcc-8004.28.1at 25.330 kb on - strand, within Xcc-8004.28.1at 25.350 kb on + strand, within Xcc-8004.28.1at 25.350 kb on + strand, within Xcc-8004.28.1at 25.350 kb on + strand, within Xcc-8004.28.1at 25.350 kb on + strand, within Xcc-8004.28.1at 25.350 kb on + strand, within Xcc-8004.28.1at 25.350 kb on + strand, within Xcc-8004.28.1at 25.351 kb on - strand, within Xcc-8004.28.1at 25.351 kb on - strand, within Xcc-8004.28.1at 25.592 kb on - strandat 25.592 kb on - strandat 25.624 kb on + strandat 25.624 kb on + strandat 25.625 kb on - strandat 25.625 kb on - strandat 25.759 kb on + strandat 25.760 kb on - strandat 25.760 kb on - strandat 25.841 kb on + strandat 25.947 kb on - strand, within Xcc-8004.29.1at 25.958 kb on + strand, within Xcc-8004.29.1at 25.958 kb on + strand, within Xcc-8004.29.1at 25.958 kb on + strand, within Xcc-8004.29.1at 25.959 kb on - strand, within Xcc-8004.29.1at 25.959 kb on - strand, within Xcc-8004.29.1at 25.959 kb on - strand, within Xcc-8004.29.1at 25.959 kb on - strand, within Xcc-8004.29.1at 26.088 kb on + strand, within Xcc-8004.29.1at 26.088 kb on + strand, within Xcc-8004.29.1at 26.089 kb on - strand, within Xcc-8004.29.1at 26.089 kb on - strand, within Xcc-8004.29.1at 26.089 kb on - strand, within Xcc-8004.29.1at 26.390 kb on + strand, within Xcc-8004.29.1at 26.391 kb on - strand, within Xcc-8004.29.1at 26.585 kb on + strand, within Xcc-8004.29.1at 26.585 kb on + strand, within Xcc-8004.29.1at 26.586 kb on - strand, within Xcc-8004.29.1at 26.586 kb on - strand, within Xcc-8004.29.1at 26.586 kb on - strand, within Xcc-8004.29.1at 27.107 kb on + strandat 27.108 kb on - strandat 27.279 kb on + strand, within Xcc-8004.30.1at 27.279 kb on + strand, within Xcc-8004.30.1at 27.280 kb on - strand, within Xcc-8004.30.1at 27.280 kb on - strand, within Xcc-8004.30.1at 27.362 kb on + strand, within Xcc-8004.30.1at 27.610 kb on + strand, within Xcc-8004.30.1at 27.610 kb on + strand, within Xcc-8004.30.1at 27.610 kb on + strand, within Xcc-8004.30.1at 27.610 kb on + strand, within Xcc-8004.30.1at 27.610 kb on + strand, within Xcc-8004.30.1at 27.610 kb on + strand, within Xcc-8004.30.1at 27.610 kb on + strand, within Xcc-8004.30.1at 27.610 kb on + strand, within Xcc-8004.30.1at 27.610 kb on + strand, within Xcc-8004.30.1at 27.610 kb on + strand, within Xcc-8004.30.1at 27.611 kb on - strand, within Xcc-8004.30.1at 27.611 kb on - strand, within Xcc-8004.30.1at 27.611 kb on - strand, within Xcc-8004.30.1at 27.611 kb on - strand, within Xcc-8004.30.1at 27.611 kb on - strand, within Xcc-8004.30.1at 27.611 kb on - strand, within Xcc-8004.30.1at 27.611 kb on - strand, within Xcc-8004.30.1at 27.611 kb on - strand, within Xcc-8004.30.1at 27.611 kb on - strand, within Xcc-8004.30.1at 27.741 kb on + strand, within Xcc-8004.30.1at 27.741 kb on + strand, within Xcc-8004.30.1at 27.741 kb on + strand, within Xcc-8004.30.1at 27.741 kb on + strand, within Xcc-8004.30.1at 27.741 kb on + strand, within Xcc-8004.30.1at 27.741 kb on + strand, within Xcc-8004.30.1at 27.741 kb on + strand, within Xcc-8004.30.1at 27.741 kb on + strand, within Xcc-8004.30.1at 27.741 kb on + strand, within Xcc-8004.30.1at 27.741 kb on + strand, within Xcc-8004.30.1at 27.741 kb on + strand, within Xcc-8004.30.1at 27.741 kb on + strand, within Xcc-8004.30.1at 27.741 kb on + strand, within Xcc-8004.30.1at 27.741 kb on + strand, within Xcc-8004.30.1at 27.741 kb on + strand, within Xcc-8004.30.1at 27.741 kb on + strand, within Xcc-8004.30.1at 27.742 kb on - strand, within Xcc-8004.30.1at 27.742 kb on - strand, within Xcc-8004.30.1at 27.742 kb on - strand, within Xcc-8004.30.1at 27.742 kb on - strand, within Xcc-8004.30.1at 27.742 kb on - strand, within Xcc-8004.30.1at 27.742 kb on - strand, within Xcc-8004.30.1at 27.742 kb on - strand, within Xcc-8004.30.1at 27.742 kb on - strand, within Xcc-8004.30.1at 27.742 kb on - strand, within Xcc-8004.30.1at 27.742 kb on - strand, within Xcc-8004.30.1at 27.742 kb on - strand, within Xcc-8004.30.1at 27.742 kb on - strand, within Xcc-8004.30.1at 27.742 kb on - strand, within Xcc-8004.30.1at 27.742 kb on - strand, within Xcc-8004.30.1at 27.742 kb on - strand, within Xcc-8004.30.1at 27.742 kb on - strand, within Xcc-8004.30.1at 27.742 kb on - strand, within Xcc-8004.30.1at 27.847 kb on + strandat 27.847 kb on + strandat 27.847 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X
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24,897 + Xcc-8004.28.1 0.58 +0.7
24,897 + Xcc-8004.28.1 0.58 -1.9
24,897 + Xcc-8004.28.1 0.58 -2.1
24,897 + Xcc-8004.28.1 0.58 -2.6
24,897 + Xcc-8004.28.1 0.58 -0.2
24,897 + Xcc-8004.28.1 0.58 -0.2
24,897 + Xcc-8004.28.1 0.58 -0.7
24,897 + Xcc-8004.28.1 0.58 -0.3
24,897 + Xcc-8004.28.1 0.58 -0.8
24,897 + Xcc-8004.28.1 0.58 -2.3
24,897 + Xcc-8004.28.1 0.58 +0.5
24,898 - Xcc-8004.28.1 0.58 -1.7
24,898 - Xcc-8004.28.1 0.58 -0.8
25,197 + Xcc-8004.28.1 0.78 -1.4
25,198 - Xcc-8004.28.1 0.78 -0.1
25,198 - Xcc-8004.28.1 0.78 -1.3
25,248 + Xcc-8004.28.1 0.82 -0.1
25,248 + Xcc-8004.28.1 0.82 -1.9
25,248 + Xcc-8004.28.1 0.82 -0.3
25,249 - Xcc-8004.28.1 0.82 -1.5
25,249 - Xcc-8004.28.1 0.82 -1.6
25,329 + Xcc-8004.28.1 0.87 -1.1
25,329 + Xcc-8004.28.1 0.87 -0.5
25,329 + Xcc-8004.28.1 0.87 -0.8
25,329 + Xcc-8004.28.1 0.87 -1.1
25,329 + Xcc-8004.28.1 0.87 -1.2
25,330 - Xcc-8004.28.1 0.87 -0.1
25,330 - Xcc-8004.28.1 0.87 -0.1
25,330 - Xcc-8004.28.1 0.87 -1.5
25,330 - Xcc-8004.28.1 0.87 -0.8
25,350 + Xcc-8004.28.1 0.88 +0.2
25,350 + Xcc-8004.28.1 0.88 +1.1
25,350 + Xcc-8004.28.1 0.88 -0.4
25,350 + Xcc-8004.28.1 0.88 -1.1
25,350 + Xcc-8004.28.1 0.88 +0.0
25,350 + Xcc-8004.28.1 0.88 -0.2
25,351 - Xcc-8004.28.1 0.88 -0.1
25,351 - Xcc-8004.28.1 0.88 -0.8
25,592 - -0.3
25,592 - -1.1
25,624 + -0.9
25,624 + +0.6
25,625 - -3.0
25,625 - -0.9
25,759 + -0.6
25,760 - +1.2
25,760 - +0.9
25,841 + -0.9
25,947 - Xcc-8004.29.1 0.13 -0.1
25,958 + Xcc-8004.29.1 0.14 +0.9
25,958 + Xcc-8004.29.1 0.14 -0.3
25,958 + Xcc-8004.29.1 0.14 -0.5
25,959 - Xcc-8004.29.1 0.14 -1.5
25,959 - Xcc-8004.29.1 0.14 +0.1
25,959 - Xcc-8004.29.1 0.14 -0.5
25,959 - Xcc-8004.29.1 0.14 +0.1
26,088 + Xcc-8004.29.1 0.24 -0.2
26,088 + Xcc-8004.29.1 0.24 -1.8
26,089 - Xcc-8004.29.1 0.24 +0.1
26,089 - Xcc-8004.29.1 0.24 -0.7
26,089 - Xcc-8004.29.1 0.24 +1.5
26,390 + Xcc-8004.29.1 0.47 +0.1
26,391 - Xcc-8004.29.1 0.47 -0.8
26,585 + Xcc-8004.29.1 0.62 -0.1
26,585 + Xcc-8004.29.1 0.62 -0.7
26,586 - Xcc-8004.29.1 0.62 -1.0
26,586 - Xcc-8004.29.1 0.62 +0.9
26,586 - Xcc-8004.29.1 0.62 -2.3
27,107 + -0.2
27,108 - +0.4
27,279 + Xcc-8004.30.1 0.17 -0.0
27,279 + Xcc-8004.30.1 0.17 +0.9
27,280 - Xcc-8004.30.1 0.17 -0.3
27,280 - Xcc-8004.30.1 0.17 -1.1
27,362 + Xcc-8004.30.1 0.30 +0.9
27,610 + Xcc-8004.30.1 0.67 -1.1
27,610 + Xcc-8004.30.1 0.67 +0.6
27,610 + Xcc-8004.30.1 0.67 -1.7
27,610 + Xcc-8004.30.1 0.67 -1.0
27,610 + Xcc-8004.30.1 0.67 +0.1
27,610 + Xcc-8004.30.1 0.67 -0.0
27,610 + Xcc-8004.30.1 0.67 -0.5
27,610 + Xcc-8004.30.1 0.67 +0.7
27,610 + Xcc-8004.30.1 0.67 -0.2
27,610 + Xcc-8004.30.1 0.67 -1.3
27,611 - Xcc-8004.30.1 0.67 +0.1
27,611 - Xcc-8004.30.1 0.67 -1.1
27,611 - Xcc-8004.30.1 0.67 +0.0
27,611 - Xcc-8004.30.1 0.67 +0.0
27,611 - Xcc-8004.30.1 0.67 -0.0
27,611 - Xcc-8004.30.1 0.67 -0.9
27,611 - Xcc-8004.30.1 0.67 +0.5
27,611 - Xcc-8004.30.1 0.67 -0.4
27,611 - Xcc-8004.30.1 0.67 +1.0
27,741 + Xcc-8004.30.1 0.87 +0.5
27,741 + Xcc-8004.30.1 0.87 -0.5
27,741 + Xcc-8004.30.1 0.87 -2.4
27,741 + Xcc-8004.30.1 0.87 -0.6
27,741 + Xcc-8004.30.1 0.87 +0.1
27,741 + Xcc-8004.30.1 0.87 -0.2
27,741 + Xcc-8004.30.1 0.87 -0.1
27,741 + Xcc-8004.30.1 0.87 -0.7
27,741 + Xcc-8004.30.1 0.87 -0.1
27,741 + Xcc-8004.30.1 0.87 -1.1
27,741 + Xcc-8004.30.1 0.87 -1.6
27,741 + Xcc-8004.30.1 0.87 +2.1
27,741 + Xcc-8004.30.1 0.87 -2.0
27,741 + Xcc-8004.30.1 0.87 +0.3
27,741 + Xcc-8004.30.1 0.87 -0.2
27,741 + Xcc-8004.30.1 0.87 -0.3
27,742 - Xcc-8004.30.1 0.87 -0.0
27,742 - Xcc-8004.30.1 0.87 -1.0
27,742 - Xcc-8004.30.1 0.87 -0.1
27,742 - Xcc-8004.30.1 0.87 +0.7
27,742 - Xcc-8004.30.1 0.87 -0.6
27,742 - Xcc-8004.30.1 0.87 +0.7
27,742 - Xcc-8004.30.1 0.87 -0.0
27,742 - Xcc-8004.30.1 0.87 -0.6
27,742 - Xcc-8004.30.1 0.87 -0.1
27,742 - Xcc-8004.30.1 0.87 +0.9
27,742 - Xcc-8004.30.1 0.87 -1.4
27,742 - Xcc-8004.30.1 0.87 +0.1
27,742 - Xcc-8004.30.1 0.87 -0.7
27,742 - Xcc-8004.30.1 0.87 +0.2
27,742 - Xcc-8004.30.1 0.87 +0.5
27,742 - Xcc-8004.30.1 0.87 +0.2
27,742 - Xcc-8004.30.1 0.87 +0.0
27,847 + -0.7
27,847 + -0.3
27,847 + -0.1

Or see this region's nucleotide sequence