Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.288.1

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.287.1 and Xcc-8004.288.1 are separated by 126 nucleotidesXcc-8004.288.1 and Xcc-8004.289.1 are separated by 291 nucleotides Xcc-8004.287.1: Xcc-8004.287.1 - Haloalkane dehalogenase-like protein, at 274,298 to 275,200 Xcc-8004.287.1 Xcc-8004.288.1: Xcc-8004.288.1 - Ferredoxin, at 275,327 to 275,755 Xcc-8004.288.1 Xcc-8004.289.1: Xcc-8004.289.1 - AMP-dependent synthetase/ligase in alkane synthesis cluster, at 276,047 to 277,717 Xcc-8004.289.1 Position (kb) 275 276Strain fitness (log2 ratio) -1 0 1 2at 274.364 kb on + strandat 274.364 kb on + strandat 274.365 kb on - strandat 274.431 kb on - strand, within Xcc-8004.287.1at 274.431 kb on - strand, within Xcc-8004.287.1at 274.554 kb on - strand, within Xcc-8004.287.1at 274.877 kb on + strand, within Xcc-8004.287.1at 274.877 kb on + strand, within Xcc-8004.287.1at 274.877 kb on + strand, within Xcc-8004.287.1at 274.877 kb on + strand, within Xcc-8004.287.1at 274.877 kb on + strand, within Xcc-8004.287.1at 274.878 kb on - strand, within Xcc-8004.287.1at 274.878 kb on - strand, within Xcc-8004.287.1at 274.878 kb on - strand, within Xcc-8004.287.1at 274.878 kb on - strand, within Xcc-8004.287.1at 275.129 kb on + strandat 275.129 kb on + strandat 275.198 kb on + strandat 275.198 kb on + strandat 275.335 kb on + strandat 275.336 kb on - strandat 275.336 kb on - strandat 275.692 kb on + strand, within Xcc-8004.288.1at 275.692 kb on + strand, within Xcc-8004.288.1at 275.693 kb on - strand, within Xcc-8004.288.1at 275.778 kb on - strandat 275.892 kb on + strandat 275.914 kb on + strandat 276.039 kb on - strandat 276.082 kb on + strandat 276.500 kb on + strand, within Xcc-8004.289.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X
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274,364 + -1.1
274,364 + +1.4
274,365 - -1.1
274,431 - Xcc-8004.287.1 0.15 +0.6
274,431 - Xcc-8004.287.1 0.15 -0.5
274,554 - Xcc-8004.287.1 0.28 +1.2
274,877 + Xcc-8004.287.1 0.64 -1.1
274,877 + Xcc-8004.287.1 0.64 +1.6
274,877 + Xcc-8004.287.1 0.64 +0.2
274,877 + Xcc-8004.287.1 0.64 +1.2
274,877 + Xcc-8004.287.1 0.64 +0.3
274,878 - Xcc-8004.287.1 0.64 -0.1
274,878 - Xcc-8004.287.1 0.64 +1.9
274,878 - Xcc-8004.287.1 0.64 +1.9
274,878 - Xcc-8004.287.1 0.64 -0.7
275,129 + -0.9
275,129 + -0.4
275,198 + +0.1
275,198 + -0.2
275,335 + +0.3
275,336 - -0.0
275,336 - -0.7
275,692 + Xcc-8004.288.1 0.85 +0.2
275,692 + Xcc-8004.288.1 0.85 +0.9
275,693 - Xcc-8004.288.1 0.85 -0.7
275,778 - +1.0
275,892 + +0.4
275,914 + +0.2
276,039 - -1.1
276,082 + -0.2
276,500 + Xcc-8004.289.1 0.27 +0.2

Or see this region's nucleotide sequence