Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.2711.1

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.2710.1 and Xcc-8004.2711.1 overlap by 4 nucleotidesXcc-8004.2711.1 and Xcc-8004.2712.1 are separated by 2 nucleotides Xcc-8004.2710.1: Xcc-8004.2710.1 - Assimilatory nitrate reductase large subunit (EC:1.7.99.4), at 2,620,203 to 2,623,001 Xcc-8004.2710.1 Xcc-8004.2711.1: Xcc-8004.2711.1 - Nitrite reductase [NAD(P)H] small subunit (EC 1.7.1.4), at 2,622,998 to 2,623,357 Xcc-8004.2711.1 Xcc-8004.2712.1: Xcc-8004.2712.1 - Nitrite reductase [NAD(P)H] large subunit (EC 1.7.1.4), at 2,623,360 to 2,625,813 Xcc-8004.2712.1 Position (kb) 2622 2623 2624Strain fitness (log2 ratio) -2 -1 0 1 2at 2622.046 kb on + strand, within Xcc-8004.2710.1at 2622.046 kb on + strand, within Xcc-8004.2710.1at 2622.046 kb on + strand, within Xcc-8004.2710.1at 2622.047 kb on - strand, within Xcc-8004.2710.1at 2622.146 kb on - strand, within Xcc-8004.2710.1at 2622.354 kb on - strand, within Xcc-8004.2710.1at 2622.400 kb on + strand, within Xcc-8004.2710.1at 2622.400 kb on + strand, within Xcc-8004.2710.1at 2622.401 kb on - strand, within Xcc-8004.2710.1at 2622.454 kb on + strand, within Xcc-8004.2710.1at 2622.454 kb on + strand, within Xcc-8004.2710.1at 2622.454 kb on + strand, within Xcc-8004.2710.1at 2622.454 kb on + strand, within Xcc-8004.2710.1at 2622.455 kb on - strand, within Xcc-8004.2710.1at 2622.494 kb on - strand, within Xcc-8004.2710.1at 2622.494 kb on - strand, within Xcc-8004.2710.1at 2622.584 kb on - strand, within Xcc-8004.2710.1at 2622.584 kb on - strand, within Xcc-8004.2710.1at 2622.586 kb on + strand, within Xcc-8004.2710.1at 2622.586 kb on + strand, within Xcc-8004.2710.1at 2622.586 kb on + strand, within Xcc-8004.2710.1at 2622.587 kb on - strand, within Xcc-8004.2710.1at 2622.587 kb on - strand, within Xcc-8004.2710.1at 2622.616 kb on + strand, within Xcc-8004.2710.1at 2622.616 kb on + strand, within Xcc-8004.2710.1at 2622.616 kb on + strand, within Xcc-8004.2710.1at 2622.617 kb on - strand, within Xcc-8004.2710.1at 2622.617 kb on - strand, within Xcc-8004.2710.1at 2622.910 kb on + strandat 2622.911 kb on - strandat 2623.035 kb on - strand, within Xcc-8004.2711.1at 2623.235 kb on + strand, within Xcc-8004.2711.1at 2623.406 kb on + strandat 2623.406 kb on + strandat 2623.407 kb on - strandat 2623.469 kb on + strandat 2623.469 kb on + strandat 2623.532 kb on + strandat 2623.532 kb on + strandat 2623.532 kb on + strandat 2623.533 kb on - strandat 2623.533 kb on - strandat 2623.556 kb on + strandat 2623.557 kb on - strandat 2623.557 kb on - strandat 2623.557 kb on - strandat 2623.557 kb on - strandat 2623.577 kb on + strandat 2623.577 kb on + strandat 2623.578 kb on - strandat 2623.580 kb on + strandat 2623.581 kb on - strandat 2623.581 kb on - strandat 2623.581 kb on - strandat 2623.620 kb on - strand, within Xcc-8004.2712.1at 2623.923 kb on - strand, within Xcc-8004.2712.1at 2623.957 kb on + strand, within Xcc-8004.2712.1at 2623.957 kb on + strand, within Xcc-8004.2712.1at 2623.957 kb on + strand, within Xcc-8004.2712.1at 2623.957 kb on + strand, within Xcc-8004.2712.1at 2623.957 kb on + strand, within Xcc-8004.2712.1at 2623.957 kb on + strand, within Xcc-8004.2712.1at 2623.957 kb on + strand, within Xcc-8004.2712.1at 2623.958 kb on - strand, within Xcc-8004.2712.1at 2623.958 kb on - strand, within Xcc-8004.2712.1at 2623.958 kb on - strand, within Xcc-8004.2712.1at 2623.958 kb on - strand, within Xcc-8004.2712.1at 2623.958 kb on - strand, within Xcc-8004.2712.1at 2623.958 kb on - strand, within Xcc-8004.2712.1at 2623.958 kb on - strand, within Xcc-8004.2712.1at 2624.036 kb on + strand, within Xcc-8004.2712.1at 2624.037 kb on - strand, within Xcc-8004.2712.1at 2624.210 kb on + strand, within Xcc-8004.2712.1at 2624.210 kb on + strand, within Xcc-8004.2712.1at 2624.210 kb on + strand, within Xcc-8004.2712.1at 2624.210 kb on + strand, within Xcc-8004.2712.1at 2624.211 kb on - strand, within Xcc-8004.2712.1at 2624.211 kb on - strand, within Xcc-8004.2712.1at 2624.211 kb on - strand, within Xcc-8004.2712.1at 2624.211 kb on - strand, within Xcc-8004.2712.1at 2624.211 kb on - strand, within Xcc-8004.2712.1at 2624.213 kb on + strand, within Xcc-8004.2712.1at 2624.213 kb on + strand, within Xcc-8004.2712.1at 2624.214 kb on - strand, within Xcc-8004.2712.1at 2624.214 kb on - strand, within Xcc-8004.2712.1at 2624.214 kb on - strand, within Xcc-8004.2712.1at 2624.214 kb on - strand, within Xcc-8004.2712.1at 2624.214 kb on - strand, within Xcc-8004.2712.1at 2624.273 kb on + strand, within Xcc-8004.2712.1at 2624.273 kb on + strand, within Xcc-8004.2712.1at 2624.274 kb on - strand, within Xcc-8004.2712.1at 2624.274 kb on - strand, within Xcc-8004.2712.1at 2624.274 kb on - strand, within Xcc-8004.2712.1at 2624.274 kb on - strand, within Xcc-8004.2712.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X
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2,622,046 + Xcc-8004.2710.1 0.66 +0.8
2,622,046 + Xcc-8004.2710.1 0.66 +1.5
2,622,046 + Xcc-8004.2710.1 0.66 -0.3
2,622,047 - Xcc-8004.2710.1 0.66 +0.8
2,622,146 - Xcc-8004.2710.1 0.69 -0.2
2,622,354 - Xcc-8004.2710.1 0.77 +0.1
2,622,400 + Xcc-8004.2710.1 0.78 -0.2
2,622,400 + Xcc-8004.2710.1 0.78 -0.2
2,622,401 - Xcc-8004.2710.1 0.79 -0.7
2,622,454 + Xcc-8004.2710.1 0.80 -0.2
2,622,454 + Xcc-8004.2710.1 0.80 +0.9
2,622,454 + Xcc-8004.2710.1 0.80 -0.7
2,622,454 + Xcc-8004.2710.1 0.80 -0.2
2,622,455 - Xcc-8004.2710.1 0.80 -0.1
2,622,494 - Xcc-8004.2710.1 0.82 +0.8
2,622,494 - Xcc-8004.2710.1 0.82 +1.0
2,622,584 - Xcc-8004.2710.1 0.85 +1.0
2,622,584 - Xcc-8004.2710.1 0.85 -0.1
2,622,586 + Xcc-8004.2710.1 0.85 +0.4
2,622,586 + Xcc-8004.2710.1 0.85 +0.2
2,622,586 + Xcc-8004.2710.1 0.85 -1.6
2,622,587 - Xcc-8004.2710.1 0.85 +1.5
2,622,587 - Xcc-8004.2710.1 0.85 +0.4
2,622,616 + Xcc-8004.2710.1 0.86 +1.0
2,622,616 + Xcc-8004.2710.1 0.86 +0.7
2,622,616 + Xcc-8004.2710.1 0.86 +0.6
2,622,617 - Xcc-8004.2710.1 0.86 +0.5
2,622,617 - Xcc-8004.2710.1 0.86 -0.2
2,622,910 + -0.6
2,622,911 - +0.6
2,623,035 - Xcc-8004.2711.1 0.10 -0.7
2,623,235 + Xcc-8004.2711.1 0.66 -1.4
2,623,406 + +0.4
2,623,406 + +0.3
2,623,407 - -0.9
2,623,469 + -0.4
2,623,469 + -0.3
2,623,532 + +0.3
2,623,532 + +0.5
2,623,532 + +0.2
2,623,533 - -0.4
2,623,533 - -0.6
2,623,556 + -0.4
2,623,557 - -0.3
2,623,557 - -0.4
2,623,557 - -0.8
2,623,557 - +1.5
2,623,577 + -0.8
2,623,577 + +1.0
2,623,578 - +0.4
2,623,580 + -1.0
2,623,581 - -0.7
2,623,581 - -0.1
2,623,581 - -0.9
2,623,620 - Xcc-8004.2712.1 0.11 +0.2
2,623,923 - Xcc-8004.2712.1 0.23 +0.1
2,623,957 + Xcc-8004.2712.1 0.24 -0.3
2,623,957 + Xcc-8004.2712.1 0.24 +0.6
2,623,957 + Xcc-8004.2712.1 0.24 +1.7
2,623,957 + Xcc-8004.2712.1 0.24 -1.4
2,623,957 + Xcc-8004.2712.1 0.24 +0.4
2,623,957 + Xcc-8004.2712.1 0.24 -0.8
2,623,957 + Xcc-8004.2712.1 0.24 -0.0
2,623,958 - Xcc-8004.2712.1 0.24 +0.3
2,623,958 - Xcc-8004.2712.1 0.24 -1.4
2,623,958 - Xcc-8004.2712.1 0.24 -0.2
2,623,958 - Xcc-8004.2712.1 0.24 -1.9
2,623,958 - Xcc-8004.2712.1 0.24 +0.1
2,623,958 - Xcc-8004.2712.1 0.24 +1.0
2,623,958 - Xcc-8004.2712.1 0.24 -1.0
2,624,036 + Xcc-8004.2712.1 0.28 -0.5
2,624,037 - Xcc-8004.2712.1 0.28 +0.2
2,624,210 + Xcc-8004.2712.1 0.35 -0.4
2,624,210 + Xcc-8004.2712.1 0.35 -0.5
2,624,210 + Xcc-8004.2712.1 0.35 +2.0
2,624,210 + Xcc-8004.2712.1 0.35 +0.8
2,624,211 - Xcc-8004.2712.1 0.35 +0.6
2,624,211 - Xcc-8004.2712.1 0.35 -0.6
2,624,211 - Xcc-8004.2712.1 0.35 -0.3
2,624,211 - Xcc-8004.2712.1 0.35 -0.4
2,624,211 - Xcc-8004.2712.1 0.35 +0.2
2,624,213 + Xcc-8004.2712.1 0.35 -1.0
2,624,213 + Xcc-8004.2712.1 0.35 +0.3
2,624,214 - Xcc-8004.2712.1 0.35 -1.8
2,624,214 - Xcc-8004.2712.1 0.35 -0.1
2,624,214 - Xcc-8004.2712.1 0.35 +0.5
2,624,214 - Xcc-8004.2712.1 0.35 -1.0
2,624,214 - Xcc-8004.2712.1 0.35 -1.4
2,624,273 + Xcc-8004.2712.1 0.37 -0.2
2,624,273 + Xcc-8004.2712.1 0.37 -0.4
2,624,274 - Xcc-8004.2712.1 0.37 -1.1
2,624,274 - Xcc-8004.2712.1 0.37 +1.9
2,624,274 - Xcc-8004.2712.1 0.37 -1.4
2,624,274 - Xcc-8004.2712.1 0.37 -1.3

Or see this region's nucleotide sequence