Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.271.1

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntXcc-8004.269.1 and Xcc-8004.270.1 are separated by 109 nucleotidesXcc-8004.270.1 and Xcc-8004.271.1 are separated by 17 nucleotidesXcc-8004.271.1 and Xcc-8004.273.1 are separated by 482 nucleotides Xcc-8004.269.1: Xcc-8004.269.1 - FIG136845: Rhodanese-related sulfurtransferase, at 260,239 to 260,676 Xcc-8004.269.1 Xcc-8004.270.1: Xcc-8004.270.1 - Protein export cytoplasm chaperone protein (SecB, maintains protein to be exported in unfolded state), at 260,786 to 261,298 Xcc-8004.270.1 Xcc-8004.271.1: Xcc-8004.271.1 - Glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC 1.1.1.94), at 261,316 to 262,341 Xcc-8004.271.1 Xcc-8004.273.1: Xcc-8004.273.1 - FIG01209870: hypothetical protein, at 262,824 to 263,420 Xcc-8004.273.1 Position (kb) 261 262 263Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 260.608 kb on + strand, within Xcc-8004.269.1at 260.608 kb on + strand, within Xcc-8004.269.1at 260.608 kb on + strand, within Xcc-8004.269.1at 260.608 kb on + strand, within Xcc-8004.269.1at 260.608 kb on + strand, within Xcc-8004.269.1at 260.609 kb on - strand, within Xcc-8004.269.1at 260.609 kb on - strand, within Xcc-8004.269.1at 260.609 kb on - strand, within Xcc-8004.269.1at 260.723 kb on - strandat 260.781 kb on + strandat 260.782 kb on - strandat 260.782 kb on - strandat 260.782 kb on - strandat 260.782 kb on - strandat 260.782 kb on - strandat 260.864 kb on + strand, within Xcc-8004.270.1at 260.865 kb on - strand, within Xcc-8004.270.1at 261.035 kb on + strand, within Xcc-8004.270.1at 261.035 kb on + strand, within Xcc-8004.270.1at 261.036 kb on - strand, within Xcc-8004.270.1at 261.036 kb on - strand, within Xcc-8004.270.1at 261.036 kb on - strand, within Xcc-8004.270.1at 261.140 kb on + strand, within Xcc-8004.270.1at 261.140 kb on + strand, within Xcc-8004.270.1at 261.140 kb on + strand, within Xcc-8004.270.1at 261.140 kb on + strand, within Xcc-8004.270.1at 261.140 kb on + strand, within Xcc-8004.270.1at 261.140 kb on + strand, within Xcc-8004.270.1at 261.141 kb on - strand, within Xcc-8004.270.1at 261.141 kb on - strand, within Xcc-8004.270.1at 261.141 kb on - strand, within Xcc-8004.270.1at 261.141 kb on - strand, within Xcc-8004.270.1at 261.194 kb on + strand, within Xcc-8004.270.1at 261.194 kb on + strand, within Xcc-8004.270.1at 261.195 kb on - strand, within Xcc-8004.270.1at 261.195 kb on - strand, within Xcc-8004.270.1at 261.195 kb on - strand, within Xcc-8004.270.1at 261.224 kb on + strand, within Xcc-8004.270.1at 261.224 kb on + strand, within Xcc-8004.270.1at 261.224 kb on + strand, within Xcc-8004.270.1at 261.225 kb on - strand, within Xcc-8004.270.1at 261.225 kb on - strand, within Xcc-8004.270.1at 261.296 kb on + strandat 261.296 kb on + strandat 261.297 kb on - strandat 261.297 kb on - strandat 261.297 kb on - strandat 261.473 kb on - strand, within Xcc-8004.271.1at 261.473 kb on - strand, within Xcc-8004.271.1at 261.473 kb on - strand, within Xcc-8004.271.1at 261.850 kb on + strand, within Xcc-8004.271.1at 261.850 kb on + strand, within Xcc-8004.271.1at 261.850 kb on + strand, within Xcc-8004.271.1at 261.851 kb on - strand, within Xcc-8004.271.1at 261.851 kb on - strand, within Xcc-8004.271.1at 262.335 kb on + strandat 262.335 kb on + strandat 262.335 kb on + strandat 262.335 kb on + strandat 262.336 kb on - strandat 262.336 kb on - strandat 262.359 kb on + strandat 262.359 kb on + strandat 262.359 kb on + strandat 262.359 kb on + strandat 262.359 kb on + strandat 262.359 kb on + strandat 262.360 kb on - strandat 262.360 kb on - strandat 262.360 kb on - strandat 262.360 kb on - strandat 262.360 kb on - strandat 262.360 kb on - strandat 262.458 kb on + strandat 262.503 kb on + strandat 262.503 kb on + strandat 262.503 kb on + strandat 262.503 kb on + strandat 262.503 kb on + strandat 262.503 kb on + strandat 262.503 kb on + strandat 262.503 kb on + strandat 262.504 kb on - strandat 262.504 kb on - strandat 262.504 kb on - strandat 262.504 kb on - strandat 262.504 kb on - strandat 262.513 kb on + strandat 262.513 kb on + strandat 262.514 kb on - strandat 262.514 kb on - strandat 262.521 kb on + strandat 262.584 kb on + strandat 262.594 kb on + strandat 262.595 kb on - strandat 262.595 kb on - strandat 262.595 kb on - strandat 262.825 kb on + strandat 262.826 kb on - strandat 262.877 kb on + strandat 262.878 kb on - strandat 262.878 kb on - strandat 262.878 kb on - strandat 262.939 kb on + strand, within Xcc-8004.273.1at 262.939 kb on + strand, within Xcc-8004.273.1at 262.987 kb on + strand, within Xcc-8004.273.1at 263.002 kb on + strand, within Xcc-8004.273.1at 263.002 kb on + strand, within Xcc-8004.273.1at 263.002 kb on + strand, within Xcc-8004.273.1at 263.003 kb on - strand, within Xcc-8004.273.1at 263.003 kb on - strand, within Xcc-8004.273.1at 263.003 kb on - strand, within Xcc-8004.273.1at 263.053 kb on + strand, within Xcc-8004.273.1at 263.053 kb on + strand, within Xcc-8004.273.1at 263.053 kb on + strand, within Xcc-8004.273.1at 263.053 kb on + strand, within Xcc-8004.273.1at 263.053 kb on + strand, within Xcc-8004.273.1at 263.053 kb on + strand, within Xcc-8004.273.1at 263.053 kb on + strand, within Xcc-8004.273.1at 263.066 kb on + strand, within Xcc-8004.273.1at 263.066 kb on + strand, within Xcc-8004.273.1at 263.066 kb on + strand, within Xcc-8004.273.1at 263.067 kb on - strand, within Xcc-8004.273.1at 263.067 kb on - strand, within Xcc-8004.273.1at 263.146 kb on + strand, within Xcc-8004.273.1at 263.147 kb on - strand, within Xcc-8004.273.1at 263.147 kb on - strand, within Xcc-8004.273.1at 263.147 kb on - strand, within Xcc-8004.273.1at 263.231 kb on - strand, within Xcc-8004.273.1at 263.266 kb on + strand, within Xcc-8004.273.1at 263.266 kb on + strand, within Xcc-8004.273.1at 263.266 kb on + strand, within Xcc-8004.273.1at 263.266 kb on + strand, within Xcc-8004.273.1at 263.266 kb on + strand, within Xcc-8004.273.1at 263.266 kb on + strand, within Xcc-8004.273.1at 263.267 kb on - strand, within Xcc-8004.273.1at 263.267 kb on - strand, within Xcc-8004.273.1at 263.267 kb on - strand, within Xcc-8004.273.1at 263.267 kb on - strand, within Xcc-8004.273.1at 263.267 kb on - strand, within Xcc-8004.273.1at 263.323 kb on + strand, within Xcc-8004.273.1at 263.323 kb on + strand, within Xcc-8004.273.1at 263.323 kb on + strand, within Xcc-8004.273.1at 263.323 kb on + strand, within Xcc-8004.273.1at 263.323 kb on + strand, within Xcc-8004.273.1at 263.324 kb on - strand, within Xcc-8004.273.1at 263.324 kb on - strand, within Xcc-8004.273.1at 263.324 kb on - strand, within Xcc-8004.273.1at 263.324 kb on - strand, within Xcc-8004.273.1at 263.324 kb on - strand, within Xcc-8004.273.1

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X
remove
260,608 + Xcc-8004.269.1 0.84 -0.3
260,608 + Xcc-8004.269.1 0.84 -0.0
260,608 + Xcc-8004.269.1 0.84 -0.1
260,608 + Xcc-8004.269.1 0.84 -0.4
260,608 + Xcc-8004.269.1 0.84 +0.2
260,609 - Xcc-8004.269.1 0.84 +0.2
260,609 - Xcc-8004.269.1 0.84 +0.2
260,609 - Xcc-8004.269.1 0.84 -0.2
260,723 - -1.0
260,781 + -0.9
260,782 - +1.0
260,782 - -1.0
260,782 - -1.8
260,782 - -1.0
260,782 - -1.0
260,864 + Xcc-8004.270.1 0.15 -0.9
260,865 - Xcc-8004.270.1 0.15 +0.3
261,035 + Xcc-8004.270.1 0.49 +1.3
261,035 + Xcc-8004.270.1 0.49 +0.1
261,036 - Xcc-8004.270.1 0.49 -1.2
261,036 - Xcc-8004.270.1 0.49 -0.1
261,036 - Xcc-8004.270.1 0.49 -1.1
261,140 + Xcc-8004.270.1 0.69 +2.3
261,140 + Xcc-8004.270.1 0.69 -0.2
261,140 + Xcc-8004.270.1 0.69 -0.2
261,140 + Xcc-8004.270.1 0.69 -1.4
261,140 + Xcc-8004.270.1 0.69 -1.3
261,140 + Xcc-8004.270.1 0.69 -1.7
261,141 - Xcc-8004.270.1 0.69 -1.1
261,141 - Xcc-8004.270.1 0.69 +0.9
261,141 - Xcc-8004.270.1 0.69 -2.1
261,141 - Xcc-8004.270.1 0.69 -0.6
261,194 + Xcc-8004.270.1 0.80 +0.2
261,194 + Xcc-8004.270.1 0.80 -1.6
261,195 - Xcc-8004.270.1 0.80 +0.0
261,195 - Xcc-8004.270.1 0.80 -0.2
261,195 - Xcc-8004.270.1 0.80 -0.2
261,224 + Xcc-8004.270.1 0.85 -0.3
261,224 + Xcc-8004.270.1 0.85 -0.6
261,224 + Xcc-8004.270.1 0.85 -2.9
261,225 - Xcc-8004.270.1 0.86 +0.1
261,225 - Xcc-8004.270.1 0.86 -1.0
261,296 + -0.8
261,296 + -0.0
261,297 - -1.0
261,297 - +1.3
261,297 - +1.5
261,473 - Xcc-8004.271.1 0.15 -1.7
261,473 - Xcc-8004.271.1 0.15 -0.3
261,473 - Xcc-8004.271.1 0.15 -1.2
261,850 + Xcc-8004.271.1 0.52 -0.1
261,850 + Xcc-8004.271.1 0.52 -2.2
261,850 + Xcc-8004.271.1 0.52 -1.8
261,851 - Xcc-8004.271.1 0.52 +1.2
261,851 - Xcc-8004.271.1 0.52 -1.4
262,335 + +0.5
262,335 + -0.3
262,335 + -0.5
262,335 + +0.7
262,336 - +1.5
262,336 - +0.2
262,359 + +0.6
262,359 + -0.2
262,359 + -0.9
262,359 + +0.0
262,359 + +0.0
262,359 + +0.3
262,360 - +0.7
262,360 - -0.7
262,360 - +1.1
262,360 - +0.7
262,360 - -0.2
262,360 - +0.5
262,458 + -0.2
262,503 + -0.1
262,503 + +0.3
262,503 + +0.6
262,503 + -0.3
262,503 + +0.8
262,503 + +1.3
262,503 + +0.3
262,503 + +0.3
262,504 - +1.2
262,504 - +0.3
262,504 - +0.8
262,504 - -0.8
262,504 - +0.2
262,513 + +0.6
262,513 + +0.2
262,514 - +0.1
262,514 - -0.8
262,521 + -1.9
262,584 + -2.0
262,594 + -0.5
262,595 - +0.4
262,595 - +0.9
262,595 - +0.1
262,825 + -0.4
262,826 - +1.0
262,877 + -0.6
262,878 - +0.2
262,878 - +0.2
262,878 - +0.0
262,939 + Xcc-8004.273.1 0.19 -0.3
262,939 + Xcc-8004.273.1 0.19 -0.0
262,987 + Xcc-8004.273.1 0.27 -1.0
263,002 + Xcc-8004.273.1 0.30 +0.3
263,002 + Xcc-8004.273.1 0.30 -0.1
263,002 + Xcc-8004.273.1 0.30 +0.8
263,003 - Xcc-8004.273.1 0.30 -1.9
263,003 - Xcc-8004.273.1 0.30 +0.8
263,003 - Xcc-8004.273.1 0.30 -2.0
263,053 + Xcc-8004.273.1 0.38 -0.7
263,053 + Xcc-8004.273.1 0.38 -1.1
263,053 + Xcc-8004.273.1 0.38 +0.0
263,053 + Xcc-8004.273.1 0.38 -1.9
263,053 + Xcc-8004.273.1 0.38 +0.0
263,053 + Xcc-8004.273.1 0.38 -2.2
263,053 + Xcc-8004.273.1 0.38 -1.2
263,066 + Xcc-8004.273.1 0.41 -0.4
263,066 + Xcc-8004.273.1 0.41 +0.5
263,066 + Xcc-8004.273.1 0.41 -1.9
263,067 - Xcc-8004.273.1 0.41 -0.2
263,067 - Xcc-8004.273.1 0.41 -1.7
263,146 + Xcc-8004.273.1 0.54 -1.8
263,147 - Xcc-8004.273.1 0.54 +0.3
263,147 - Xcc-8004.273.1 0.54 +0.4
263,147 - Xcc-8004.273.1 0.54 -2.0
263,231 - Xcc-8004.273.1 0.68 -1.5
263,266 + Xcc-8004.273.1 0.74 +0.0
263,266 + Xcc-8004.273.1 0.74 +0.3
263,266 + Xcc-8004.273.1 0.74 -0.2
263,266 + Xcc-8004.273.1 0.74 +1.1
263,266 + Xcc-8004.273.1 0.74 +0.2
263,266 + Xcc-8004.273.1 0.74 +0.9
263,267 - Xcc-8004.273.1 0.74 -1.2
263,267 - Xcc-8004.273.1 0.74 -1.1
263,267 - Xcc-8004.273.1 0.74 -0.1
263,267 - Xcc-8004.273.1 0.74 -0.5
263,267 - Xcc-8004.273.1 0.74 -1.9
263,323 + Xcc-8004.273.1 0.84 +0.7
263,323 + Xcc-8004.273.1 0.84 -0.6
263,323 + Xcc-8004.273.1 0.84 -0.2
263,323 + Xcc-8004.273.1 0.84 +0.9
263,323 + Xcc-8004.273.1 0.84 -1.1
263,324 - Xcc-8004.273.1 0.84 -0.4
263,324 - Xcc-8004.273.1 0.84 +0.3
263,324 - Xcc-8004.273.1 0.84 +0.0
263,324 - Xcc-8004.273.1 0.84 -2.0
263,324 - Xcc-8004.273.1 0.84 -0.5

Or see this region's nucleotide sequence