Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.2668.1

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.2665.1 and Xcc-8004.2666.1 overlap by 4 nucleotidesXcc-8004.2666.1 and Xcc-8004.2668.1 are separated by 245 nucleotidesXcc-8004.2668.1 and Xcc-8004.2669.1 overlap by 16 nucleotides Xcc-8004.2665.1: Xcc-8004.2665.1 - Primosomal protein N' (replication factor Y) - superfamily II helicase, at 2,568,101 to 2,569,438 Xcc-8004.2665.1 Xcc-8004.2666.1: Xcc-8004.2666.1 - putative; ORF located using Glimmer/Genemark, at 2,569,435 to 2,569,689 Xcc-8004.2666.1 Xcc-8004.2668.1: Xcc-8004.2668.1 - Transcriptional regulator, HxlR family, at 2,569,935 to 2,570,531 Xcc-8004.2668.1 Xcc-8004.2669.1: Xcc-8004.2669.1 - transport protein, at 2,570,516 to 2,571,802 Xcc-8004.2669.1 Position (kb) 2569 2570 2571Strain fitness (log2 ratio) -2 -1 0 1 2at 2569.058 kb on + strand, within Xcc-8004.2665.1at 2569.059 kb on - strand, within Xcc-8004.2665.1at 2569.059 kb on - strand, within Xcc-8004.2665.1at 2569.107 kb on + strand, within Xcc-8004.2665.1at 2569.107 kb on + strand, within Xcc-8004.2665.1at 2569.223 kb on - strand, within Xcc-8004.2665.1at 2569.241 kb on + strand, within Xcc-8004.2665.1at 2569.241 kb on + strand, within Xcc-8004.2665.1at 2569.241 kb on + strand, within Xcc-8004.2665.1at 2569.241 kb on + strand, within Xcc-8004.2665.1at 2569.241 kb on + strand, within Xcc-8004.2665.1at 2569.241 kb on + strand, within Xcc-8004.2665.1at 2569.242 kb on - strand, within Xcc-8004.2665.1at 2569.242 kb on - strand, within Xcc-8004.2665.1at 2569.242 kb on - strand, within Xcc-8004.2665.1at 2569.259 kb on + strand, within Xcc-8004.2665.1at 2569.259 kb on + strand, within Xcc-8004.2665.1at 2569.260 kb on - strand, within Xcc-8004.2665.1at 2569.260 kb on - strand, within Xcc-8004.2665.1at 2569.265 kb on + strand, within Xcc-8004.2665.1at 2569.265 kb on + strand, within Xcc-8004.2665.1at 2569.266 kb on - strand, within Xcc-8004.2665.1at 2569.266 kb on - strand, within Xcc-8004.2665.1at 2569.301 kb on + strand, within Xcc-8004.2665.1at 2569.301 kb on + strand, within Xcc-8004.2665.1at 2569.301 kb on + strand, within Xcc-8004.2665.1at 2569.302 kb on - strand, within Xcc-8004.2665.1at 2569.302 kb on - strand, within Xcc-8004.2665.1at 2569.302 kb on - strand, within Xcc-8004.2665.1at 2569.302 kb on - strand, within Xcc-8004.2665.1at 2569.302 kb on - strand, within Xcc-8004.2665.1at 2569.302 kb on - strand, within Xcc-8004.2665.1at 2569.448 kb on + strandat 2569.448 kb on + strandat 2569.449 kb on - strandat 2569.495 kb on + strand, within Xcc-8004.2666.1at 2569.495 kb on + strand, within Xcc-8004.2666.1at 2569.496 kb on - strand, within Xcc-8004.2666.1at 2569.507 kb on + strand, within Xcc-8004.2666.1at 2569.507 kb on + strand, within Xcc-8004.2666.1at 2569.507 kb on + strand, within Xcc-8004.2666.1at 2569.508 kb on - strand, within Xcc-8004.2666.1at 2569.508 kb on - strand, within Xcc-8004.2666.1at 2569.508 kb on - strand, within Xcc-8004.2666.1at 2569.508 kb on - strand, within Xcc-8004.2666.1at 2569.513 kb on + strand, within Xcc-8004.2666.1at 2569.514 kb on - strand, within Xcc-8004.2666.1at 2569.514 kb on - strand, within Xcc-8004.2666.1at 2569.514 kb on - strand, within Xcc-8004.2666.1at 2569.514 kb on - strand, within Xcc-8004.2666.1at 2569.514 kb on - strand, within Xcc-8004.2666.1at 2569.514 kb on - strand, within Xcc-8004.2666.1at 2569.654 kb on + strand, within Xcc-8004.2666.1at 2569.677 kb on + strandat 2569.677 kb on + strandat 2569.677 kb on + strandat 2569.677 kb on + strandat 2569.678 kb on - strandat 2569.743 kb on + strandat 2569.743 kb on + strandat 2569.926 kb on + strandat 2569.936 kb on + strandat 2569.936 kb on + strandat 2569.997 kb on + strand, within Xcc-8004.2668.1at 2570.025 kb on + strand, within Xcc-8004.2668.1at 2570.025 kb on + strand, within Xcc-8004.2668.1at 2570.025 kb on + strand, within Xcc-8004.2668.1at 2570.025 kb on + strand, within Xcc-8004.2668.1at 2570.026 kb on - strand, within Xcc-8004.2668.1at 2570.026 kb on - strand, within Xcc-8004.2668.1at 2570.026 kb on - strand, within Xcc-8004.2668.1at 2570.116 kb on + strand, within Xcc-8004.2668.1at 2570.116 kb on + strand, within Xcc-8004.2668.1at 2570.116 kb on + strand, within Xcc-8004.2668.1at 2570.116 kb on + strand, within Xcc-8004.2668.1at 2570.144 kb on - strand, within Xcc-8004.2668.1at 2570.475 kb on + strandat 2570.475 kb on + strandat 2570.475 kb on + strandat 2570.475 kb on + strandat 2570.475 kb on + strandat 2570.475 kb on + strandat 2570.475 kb on + strandat 2570.475 kb on + strandat 2570.475 kb on + strandat 2570.476 kb on - strandat 2570.476 kb on - strandat 2570.476 kb on - strandat 2570.695 kb on + strand, within Xcc-8004.2669.1at 2570.696 kb on - strand, within Xcc-8004.2669.1at 2570.960 kb on + strand, within Xcc-8004.2669.1at 2570.960 kb on + strand, within Xcc-8004.2669.1at 2570.960 kb on + strand, within Xcc-8004.2669.1at 2570.960 kb on + strand, within Xcc-8004.2669.1at 2570.960 kb on + strand, within Xcc-8004.2669.1at 2570.961 kb on - strand, within Xcc-8004.2669.1at 2570.961 kb on - strand, within Xcc-8004.2669.1at 2570.961 kb on - strand, within Xcc-8004.2669.1at 2570.961 kb on - strand, within Xcc-8004.2669.1at 2570.961 kb on - strand, within Xcc-8004.2669.1at 2571.263 kb on + strand, within Xcc-8004.2669.1at 2571.287 kb on + strand, within Xcc-8004.2669.1at 2571.287 kb on + strand, within Xcc-8004.2669.1at 2571.287 kb on + strand, within Xcc-8004.2669.1at 2571.287 kb on + strand, within Xcc-8004.2669.1at 2571.288 kb on - strand, within Xcc-8004.2669.1at 2571.288 kb on - strand, within Xcc-8004.2669.1at 2571.288 kb on - strand, within Xcc-8004.2669.1at 2571.288 kb on - strand, within Xcc-8004.2669.1at 2571.288 kb on - strand, within Xcc-8004.2669.1at 2571.288 kb on - strand, within Xcc-8004.2669.1at 2571.288 kb on - strand, within Xcc-8004.2669.1at 2571.288 kb on - strand, within Xcc-8004.2669.1at 2571.288 kb on - strand, within Xcc-8004.2669.1at 2571.288 kb on - strand, within Xcc-8004.2669.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X
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2,569,058 + Xcc-8004.2665.1 0.72 -1.5
2,569,059 - Xcc-8004.2665.1 0.72 +0.2
2,569,059 - Xcc-8004.2665.1 0.72 +0.2
2,569,107 + Xcc-8004.2665.1 0.75 +0.8
2,569,107 + Xcc-8004.2665.1 0.75 +1.0
2,569,223 - Xcc-8004.2665.1 0.84 -0.3
2,569,241 + Xcc-8004.2665.1 0.85 +0.3
2,569,241 + Xcc-8004.2665.1 0.85 +0.7
2,569,241 + Xcc-8004.2665.1 0.85 +0.6
2,569,241 + Xcc-8004.2665.1 0.85 -1.4
2,569,241 + Xcc-8004.2665.1 0.85 +0.4
2,569,241 + Xcc-8004.2665.1 0.85 -1.1
2,569,242 - Xcc-8004.2665.1 0.85 +0.9
2,569,242 - Xcc-8004.2665.1 0.85 -1.0
2,569,242 - Xcc-8004.2665.1 0.85 -0.4
2,569,259 + Xcc-8004.2665.1 0.87 +0.7
2,569,259 + Xcc-8004.2665.1 0.87 -0.4
2,569,260 - Xcc-8004.2665.1 0.87 +0.0
2,569,260 - Xcc-8004.2665.1 0.87 +1.2
2,569,265 + Xcc-8004.2665.1 0.87 -0.9
2,569,265 + Xcc-8004.2665.1 0.87 +0.6
2,569,266 - Xcc-8004.2665.1 0.87 +0.2
2,569,266 - Xcc-8004.2665.1 0.87 -1.0
2,569,301 + Xcc-8004.2665.1 0.90 -0.8
2,569,301 + Xcc-8004.2665.1 0.90 +1.0
2,569,301 + Xcc-8004.2665.1 0.90 -0.2
2,569,302 - Xcc-8004.2665.1 0.90 +0.8
2,569,302 - Xcc-8004.2665.1 0.90 -1.0
2,569,302 - Xcc-8004.2665.1 0.90 -1.0
2,569,302 - Xcc-8004.2665.1 0.90 -0.8
2,569,302 - Xcc-8004.2665.1 0.90 +0.7
2,569,302 - Xcc-8004.2665.1 0.90 -0.8
2,569,448 + -1.3
2,569,448 + -0.5
2,569,449 - -1.5
2,569,495 + Xcc-8004.2666.1 0.24 +0.6
2,569,495 + Xcc-8004.2666.1 0.24 -1.0
2,569,496 - Xcc-8004.2666.1 0.24 -0.9
2,569,507 + Xcc-8004.2666.1 0.28 -0.7
2,569,507 + Xcc-8004.2666.1 0.28 +0.3
2,569,507 + Xcc-8004.2666.1 0.28 -0.1
2,569,508 - Xcc-8004.2666.1 0.29 -0.0
2,569,508 - Xcc-8004.2666.1 0.29 +0.3
2,569,508 - Xcc-8004.2666.1 0.29 +0.7
2,569,508 - Xcc-8004.2666.1 0.29 -0.6
2,569,513 + Xcc-8004.2666.1 0.31 -0.3
2,569,514 - Xcc-8004.2666.1 0.31 -0.6
2,569,514 - Xcc-8004.2666.1 0.31 -0.1
2,569,514 - Xcc-8004.2666.1 0.31 -1.5
2,569,514 - Xcc-8004.2666.1 0.31 -1.1
2,569,514 - Xcc-8004.2666.1 0.31 +0.2
2,569,514 - Xcc-8004.2666.1 0.31 -1.9
2,569,654 + Xcc-8004.2666.1 0.86 -0.4
2,569,677 + +0.6
2,569,677 + -2.6
2,569,677 + +2.0
2,569,677 + -0.1
2,569,678 - -1.1
2,569,743 + -1.0
2,569,743 + -0.1
2,569,926 + -1.4
2,569,936 + -0.3
2,569,936 + -1.2
2,569,997 + Xcc-8004.2668.1 0.10 -2.0
2,570,025 + Xcc-8004.2668.1 0.15 -0.0
2,570,025 + Xcc-8004.2668.1 0.15 +0.1
2,570,025 + Xcc-8004.2668.1 0.15 +0.0
2,570,025 + Xcc-8004.2668.1 0.15 -0.7
2,570,026 - Xcc-8004.2668.1 0.15 -0.4
2,570,026 - Xcc-8004.2668.1 0.15 +0.2
2,570,026 - Xcc-8004.2668.1 0.15 +0.7
2,570,116 + Xcc-8004.2668.1 0.30 -0.2
2,570,116 + Xcc-8004.2668.1 0.30 +1.1
2,570,116 + Xcc-8004.2668.1 0.30 -1.3
2,570,116 + Xcc-8004.2668.1 0.30 -1.8
2,570,144 - Xcc-8004.2668.1 0.35 -0.7
2,570,475 + +0.7
2,570,475 + -0.9
2,570,475 + -0.4
2,570,475 + +1.4
2,570,475 + -1.5
2,570,475 + -0.4
2,570,475 + -1.1
2,570,475 + -0.6
2,570,475 + -0.2
2,570,476 - -0.0
2,570,476 - +0.7
2,570,476 - -2.4
2,570,695 + Xcc-8004.2669.1 0.14 +0.0
2,570,696 - Xcc-8004.2669.1 0.14 +0.6
2,570,960 + Xcc-8004.2669.1 0.34 -0.6
2,570,960 + Xcc-8004.2669.1 0.34 -0.8
2,570,960 + Xcc-8004.2669.1 0.34 +1.2
2,570,960 + Xcc-8004.2669.1 0.34 +0.5
2,570,960 + Xcc-8004.2669.1 0.34 -1.0
2,570,961 - Xcc-8004.2669.1 0.35 -0.9
2,570,961 - Xcc-8004.2669.1 0.35 +0.3
2,570,961 - Xcc-8004.2669.1 0.35 -0.4
2,570,961 - Xcc-8004.2669.1 0.35 -0.3
2,570,961 - Xcc-8004.2669.1 0.35 -0.2
2,571,263 + Xcc-8004.2669.1 0.58 -0.6
2,571,287 + Xcc-8004.2669.1 0.60 -0.5
2,571,287 + Xcc-8004.2669.1 0.60 +0.9
2,571,287 + Xcc-8004.2669.1 0.60 -1.7
2,571,287 + Xcc-8004.2669.1 0.60 -0.0
2,571,288 - Xcc-8004.2669.1 0.60 +1.0
2,571,288 - Xcc-8004.2669.1 0.60 +0.9
2,571,288 - Xcc-8004.2669.1 0.60 -0.5
2,571,288 - Xcc-8004.2669.1 0.60 -0.6
2,571,288 - Xcc-8004.2669.1 0.60 -0.9
2,571,288 - Xcc-8004.2669.1 0.60 +0.2
2,571,288 - Xcc-8004.2669.1 0.60 +0.2
2,571,288 - Xcc-8004.2669.1 0.60 -0.6
2,571,288 - Xcc-8004.2669.1 0.60 +0.9
2,571,288 - Xcc-8004.2669.1 0.60 -0.2

Or see this region's nucleotide sequence