Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.2652.1

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X
2,554,572	+		Xcc-8004.2651.1	0.34	-0.6
2,554,572	-		Xcc-8004.2651.1	0.34	+1.3
2,554,588	+		Xcc-8004.2651.1	0.35	-0.4
2,554,588	+		Xcc-8004.2651.1	0.35	+0.4
2,554,588	+		Xcc-8004.2651.1	0.35	-0.9
2,554,646	+		Xcc-8004.2651.1	0.40	+1.0
2,554,646	+		Xcc-8004.2651.1	0.40	-0.4
2,554,647	-		Xcc-8004.2651.1	0.40	+0.2
2,554,663	-		Xcc-8004.2651.1	0.41	-0.3
2,554,663	-		Xcc-8004.2651.1	0.41	-0.1
2,554,663	-		Xcc-8004.2651.1	0.41	+0.6
2,555,183	-		Xcc-8004.2651.1	0.81	+0.7
2,555,349	-				-0.3
2,555,393	+				-1.0
2,555,393	+				+0.1
2,555,446	+				-2.8
2,555,446	+				-0.0
2,555,446	+				-0.5
2,555,446	+				+0.5
2,555,446	+				-1.3
2,555,446	+				+0.6
2,555,447	-				-0.2
2,555,447	-				+0.5
2,555,447	-				-1.2
2,555,452	-				+0.4
2,555,452	-				+1.0
2,555,457	+				-0.5
2,555,457	+				-1.8
2,555,487	-				-0.2
2,555,492	+				+1.4
2,555,723	-		Xcc-8004.2652.1	0.55	+0.0
2,555,723	-		Xcc-8004.2652.1	0.55	-0.9
2,555,742	-		Xcc-8004.2652.1	0.60	-1.9
2,556,024	+				-0.5
2,556,126	+				+0.4
2,556,127	-				+0.4
2,556,171	-				-0.9
2,556,175	+				+0.6
2,556,176	-				-1.1
2,556,176	-				+0.8
2,556,420	+		Xcc-8004.2653.1	0.43	-1.0
2,556,421	-		Xcc-8004.2653.1	0.43	-0.2
2,556,423	+		Xcc-8004.2653.1	0.44	-1.1
2,556,423	+		Xcc-8004.2653.1	0.44	-1.3
2,556,423	+		Xcc-8004.2653.1	0.44	+0.9
2,556,423	+		Xcc-8004.2653.1	0.44	+0.0
2,556,423	+		Xcc-8004.2653.1	0.44	+0.1
2,556,443	-		Xcc-8004.2653.1	0.52	-0.7
2,556,446	+		Xcc-8004.2653.1	0.54	-0.2
2,556,564	+				+0.2
2,556,565	-				+1.7
2,556,565	-				+0.5
2,556,606	+		Xcc-8004.2654.1	0.17	-1.1
2,556,606	+		Xcc-8004.2654.1	0.17	+0.4
2,556,606	+		Xcc-8004.2654.1	0.17	-1.2
2,556,606	+		Xcc-8004.2654.1	0.17	-0.3
2,556,606	+		Xcc-8004.2654.1	0.17	-0.9
2,556,606	+		Xcc-8004.2654.1	0.17	-0.5
2,556,606	+		Xcc-8004.2654.1	0.17	+0.5
2,556,607	-		Xcc-8004.2654.1	0.17	+0.3
2,556,607	-		Xcc-8004.2654.1	0.17	+1.5
2,556,607	-		Xcc-8004.2654.1	0.17	-0.5
2,556,607	-		Xcc-8004.2654.1	0.17	-0.7
2,556,607	-		Xcc-8004.2654.1	0.17	+1.1
2,556,607	-		Xcc-8004.2654.1	0.17	-0.4
2,556,609	-		Xcc-8004.2654.1	0.17	-1.1
2,556,765	-		Xcc-8004.2654.1	0.68	+1.0
2,556,765	-		Xcc-8004.2654.1	0.68	-0.6
2,556,765	-		Xcc-8004.2654.1	0.68	-0.7
2,556,765	-		Xcc-8004.2654.1	0.68	-1.6
2,556,806	+		Xcc-8004.2654.1	0.81	+0.7
2,556,862	-				-0.3