Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.2635.1

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X
2,536,080	+		Xcc-8004.2633.1	0.56	+0.1
2,536,080	+		Xcc-8004.2633.1	0.56	-0.4
2,536,080	+		Xcc-8004.2633.1	0.56	-0.8
2,536,081	-		Xcc-8004.2633.1	0.56	-2.0
2,536,207	+		Xcc-8004.2633.1	0.66	+0.1
2,536,207	+		Xcc-8004.2633.1	0.66	+0.1
2,536,208	-		Xcc-8004.2633.1	0.66	+0.6
2,536,376	-		Xcc-8004.2633.1	0.79	+0.5
2,536,376	-		Xcc-8004.2633.1	0.79	+1.3
2,536,984	+				+0.4
2,537,015	+				-1.0
2,537,015	+				+0.8
2,537,015	+				+0.0
2,537,015	+				+0.2
2,537,015	+				-1.2
2,537,015	+				+2.2
2,537,015	+				+0.2
2,537,023	+				-0.3
2,537,023	+				-0.7
2,537,023	+				+0.6
2,537,023	+				-1.3
2,537,023	+				+2.0
2,537,135	+		Xcc-8004.2635.1	0.25	-1.4
2,537,175	+		Xcc-8004.2635.1	0.37	-1.3
2,537,175	+		Xcc-8004.2635.1	0.37	+0.8
2,537,175	+		Xcc-8004.2635.1	0.37	-0.6
2,537,176	-		Xcc-8004.2635.1	0.37	-2.0
2,537,176	-		Xcc-8004.2635.1	0.37	-1.0
2,537,176	-		Xcc-8004.2635.1	0.37	+0.5
2,537,176	-		Xcc-8004.2635.1	0.37	+0.3
2,537,176	-		Xcc-8004.2635.1	0.37	-2.2
2,537,176	-		Xcc-8004.2635.1	0.37	-0.5
2,537,322	+		Xcc-8004.2635.1	0.80	+0.1
2,537,363	+				+1.3
2,537,363	+				-1.0
2,537,363	+				+0.5
2,537,363	+				+1.0
2,537,363	+				-0.1
2,537,363	+				+0.3
2,537,364	-				-0.6
2,537,364	-				+0.7
2,537,364	-				-1.0
2,537,364	-				+0.5
2,537,373	+				-1.7
2,537,373	+				-0.4
2,537,373	+				-0.7
2,537,373	+				-0.6
2,537,373	+				-0.3
2,537,373	+				+0.9
2,537,373	+				+0.1
2,537,374	-				+0.8
2,537,374	-				-0.9
2,537,374	-				-1.2
2,537,374	-				-0.7
2,537,374	-				+0.1
2,537,374	-				-1.7
2,537,374	-				-0.4
2,537,374	-				+0.6
2,537,374	-				+0.3
2,537,381	+				-0.5
2,537,381	+				-0.7
2,537,381	+				+0.4
2,537,381	+				-0.8
2,537,381	+				+0.5
2,537,381	+				+1.1
2,537,381	+				-0.7
2,537,381	+				-0.7
2,537,381	+				-0.2
2,537,381	+				+0.2
2,537,381	+				-0.1
2,537,382	-				-0.3
2,537,382	-				+1.1
2,537,382	-				-0.8
2,537,426	+				-0.4
2,537,426	+				+0.7
2,537,426	+				-0.7
2,537,426	+				-2.7
2,537,426	+				-0.8
2,537,426	+				-0.8
2,537,426	+				+0.3
2,537,426	+				-0.3
2,537,426	+				-0.3
2,537,426	+				+0.8
2,537,426	+				+0.3
2,537,426	+				-0.2
2,537,426	+				+0.1
2,537,426	+				-0.9
2,537,427	-				-0.8
2,537,427	-				+0.2
2,537,427	-				+0.4
2,537,427	-				-0.9
2,537,427	-				-1.7
2,537,427	-				+0.8
2,537,427	-				-1.3
2,537,455	+				-0.0
2,537,455	+				+0.1
2,537,455	+				+0.6
2,537,456	-				+0.6
2,537,456	-				-1.1
2,537,495	-				+0.6
2,537,571	+				+0.6
2,537,571	+				-0.1
2,537,572	-				-0.7
2,537,572	-				-0.2
2,537,660	+		Xcc-8004.2636.1	0.30	-0.1
2,537,660	+		Xcc-8004.2636.1	0.30	-0.2
2,537,660	+		Xcc-8004.2636.1	0.30	-0.3
2,537,660	+		Xcc-8004.2636.1	0.30	-1.4
2,537,660	+		Xcc-8004.2636.1	0.30	+0.4
2,537,660	+		Xcc-8004.2636.1	0.30	-0.4
2,537,660	+		Xcc-8004.2636.1	0.30	+1.1
2,537,660	+		Xcc-8004.2636.1	0.30	+0.2
2,537,660	+		Xcc-8004.2636.1	0.30	-0.0
2,537,660	+		Xcc-8004.2636.1	0.30	+0.8
2,537,660	+		Xcc-8004.2636.1	0.30	-0.9
2,537,661	-		Xcc-8004.2636.1	0.30	+0.8
2,537,661	-		Xcc-8004.2636.1	0.30	-1.9
2,537,661	-		Xcc-8004.2636.1	0.30	-1.0
2,537,661	-		Xcc-8004.2636.1	0.30	-0.0
2,537,661	-		Xcc-8004.2636.1	0.30	-0.7
2,537,670	-		Xcc-8004.2636.1	0.33	+0.7
2,537,761	+		Xcc-8004.2636.1	0.61	-1.7
2,537,761	+		Xcc-8004.2636.1	0.61	-1.5
2,537,761	+		Xcc-8004.2636.1	0.61	+0.1
2,537,762	-		Xcc-8004.2636.1	0.61	+0.6
2,537,762	-		Xcc-8004.2636.1	0.61	+1.4
2,537,762	-		Xcc-8004.2636.1	0.61	-1.0
2,537,762	-		Xcc-8004.2636.1	0.61	+0.3
2,537,762	-		Xcc-8004.2636.1	0.61	-0.2
2,537,849	+		Xcc-8004.2636.1	0.87	-1.0
2,537,849	+		Xcc-8004.2636.1	0.87	-0.3
2,537,849	+		Xcc-8004.2636.1	0.87	+0.4
2,537,850	-		Xcc-8004.2636.1	0.88	-1.6
2,537,902	-				-0.2
2,537,908	+				-0.0
2,537,908	+				-0.1
2,537,909	-				-1.3
2,537,909	-				+0.6
2,537,909	-				+2.6
2,537,916	+				-1.0
2,537,917	-				-0.1
2,537,917	-				-0.9
2,537,917	-				-0.6
2,537,917	-				-0.1
2,537,925	-				+1.2
2,537,956	-				-0.6