Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.252.1 and Xcc-8004.253.1 are separated by 744 nucleotides Xcc-8004.253.1 and Xcc-8004.254.1 are separated by 28 nucleotides Xcc-8004.254.1 and Xcc-8004.255.1 are separated by 48 nucleotides
Xcc-8004.252.1: Xcc-8004.252.1 - Nitrogen regulation protein NtrC, at 246,701 to 248,131
Xcc-8004.252.1
Xcc-8004.253.1: Xcc-8004.253.1 - IcmF-related protein, at 248,876 to 249,256
Xcc-8004.253.1
Xcc-8004.254.1: Xcc-8004.254.1 - Superoxide dismutase [Cu-Zn] precursor (EC 1.15.1.1), at 249,285 to 249,887
Xcc-8004.254.1
Xcc-8004.255.1: Xcc-8004.255.1 - Superoxide dismutase [Cu-Zn] precursor (EC 1.15.1.1), at 249,936 to 250,583
Xcc-8004.255.1
Position (kb) 248
249
250 Strain fitness (log2 ratio) -2
-1
0
1
2 at 248.134 kb on + strand at 248.134 kb on + strand at 248.134 kb on + strand at 248.134 kb on + strand at 248.134 kb on + strand at 248.134 kb on + strand at 248.134 kb on + strand at 248.135 kb on - strand at 248.202 kb on + strand at 248.202 kb on + strand at 248.202 kb on + strand at 248.203 kb on - strand at 248.203 kb on - strand at 248.203 kb on - strand at 248.203 kb on - strand at 248.203 kb on - strand at 248.203 kb on - strand at 248.385 kb on + strand at 248.385 kb on + strand at 248.385 kb on + strand at 248.385 kb on + strand at 248.385 kb on + strand at 248.385 kb on + strand at 248.385 kb on + strand at 248.385 kb on + strand at 248.385 kb on + strand at 248.385 kb on + strand at 248.385 kb on + strand at 248.385 kb on + strand at 248.385 kb on + strand at 248.386 kb on - strand at 248.386 kb on - strand at 248.386 kb on - strand at 248.386 kb on - strand at 248.386 kb on - strand at 248.386 kb on - strand at 248.386 kb on - strand at 248.386 kb on - strand at 248.386 kb on - strand at 248.386 kb on - strand at 248.386 kb on - strand at 248.435 kb on + strand at 248.524 kb on - strand at 248.615 kb on - strand at 248.629 kb on + strand at 248.629 kb on + strand at 248.629 kb on + strand at 248.630 kb on - strand at 248.631 kb on + strand at 248.631 kb on + strand at 248.631 kb on + strand at 248.631 kb on + strand at 248.632 kb on - strand at 248.636 kb on + strand at 248.637 kb on + strand at 248.637 kb on + strand at 248.638 kb on - strand at 248.638 kb on - strand at 248.638 kb on - strand at 248.638 kb on - strand at 248.638 kb on - strand at 248.638 kb on - strand at 248.638 kb on - strand at 248.646 kb on - strand at 248.702 kb on + strand at 248.886 kb on + strand at 248.886 kb on + strand at 248.886 kb on + strand at 248.886 kb on + strand at 248.886 kb on + strand at 248.886 kb on + strand at 248.887 kb on - strand at 248.887 kb on - strand at 248.930 kb on + strand, within Xcc-8004.253.1 at 248.931 kb on - strand, within Xcc-8004.253.1 at 248.975 kb on + strand, within Xcc-8004.253.1 at 248.975 kb on + strand, within Xcc-8004.253.1 at 248.975 kb on + strand, within Xcc-8004.253.1 at 248.975 kb on + strand, within Xcc-8004.253.1 at 248.975 kb on + strand, within Xcc-8004.253.1 at 248.975 kb on + strand, within Xcc-8004.253.1 at 248.975 kb on + strand, within Xcc-8004.253.1 at 248.976 kb on - strand, within Xcc-8004.253.1 at 248.976 kb on - strand, within Xcc-8004.253.1 at 249.200 kb on - strand, within Xcc-8004.253.1 at 249.200 kb on - strand, within Xcc-8004.253.1 at 249.200 kb on - strand, within Xcc-8004.253.1 at 249.254 kb on + strand at 249.255 kb on - strand at 249.318 kb on - strand at 249.722 kb on + strand, within Xcc-8004.254.1 at 249.723 kb on - strand, within Xcc-8004.254.1 at 249.754 kb on + strand, within Xcc-8004.254.1 at 249.754 kb on + strand, within Xcc-8004.254.1 at 249.754 kb on + strand, within Xcc-8004.254.1 at 249.755 kb on - strand, within Xcc-8004.254.1 at 249.755 kb on - strand, within Xcc-8004.254.1 at 249.755 kb on - strand, within Xcc-8004.254.1 at 249.755 kb on - strand, within Xcc-8004.254.1 at 249.755 kb on - strand, within Xcc-8004.254.1 at 249.755 kb on - strand, within Xcc-8004.254.1 at 249.755 kb on - strand, within Xcc-8004.254.1 at 249.755 kb on - strand, within Xcc-8004.254.1 at 249.942 kb on - strand at 249.942 kb on - strand at 249.942 kb on - strand at 249.942 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X remove 248,134 + +0.4 248,134 + +1.1 248,134 + -0.3 248,134 + -1.1 248,134 + +1.2 248,134 + -1.0 248,134 + +0.1 248,135 - -0.7 248,202 + +0.8 248,202 + +0.9 248,202 + +0.9 248,203 - -0.5 248,203 - -0.3 248,203 - +0.7 248,203 - +0.1 248,203 - -1.5 248,203 - -0.3 248,385 + -1.5 248,385 + +2.0 248,385 + -0.7 248,385 + +0.7 248,385 + -1.4 248,385 + +0.7 248,385 + +0.6 248,385 + +1.0 248,385 + +0.3 248,385 + -0.0 248,385 + -0.2 248,385 + -0.1 248,385 + -0.2 248,386 - +0.1 248,386 - -0.3 248,386 - +0.3 248,386 - +0.8 248,386 - +0.2 248,386 - -0.0 248,386 - +0.9 248,386 - +1.1 248,386 - -0.5 248,386 - -0.2 248,386 - -0.6 248,435 + +0.7 248,524 - -0.1 248,615 - -0.5 248,629 + +0.7 248,629 + +0.7 248,629 + +0.0 248,630 - +0.4 248,631 + -1.4 248,631 + -0.3 248,631 + -0.3 248,631 + +1.2 248,632 - -0.1 248,636 + +0.4 248,637 + +0.9 248,637 + +0.3 248,638 - +0.3 248,638 - -0.1 248,638 - -0.0 248,638 - -2.3 248,638 - +1.2 248,638 - -0.0 248,638 - -0.6 248,646 - -0.3 248,702 + -2.6 248,886 + +0.3 248,886 + -0.3 248,886 + +1.1 248,886 + -0.5 248,886 + -0.5 248,886 + +0.3 248,887 - +1.0 248,887 - -0.2 248,930 + Xcc-8004.253.1 0.14 -0.0 248,931 - Xcc-8004.253.1 0.14 -1.9 248,975 + Xcc-8004.253.1 0.26 +0.9 248,975 + Xcc-8004.253.1 0.26 -1.9 248,975 + Xcc-8004.253.1 0.26 -0.1 248,975 + Xcc-8004.253.1 0.26 -0.9 248,975 + Xcc-8004.253.1 0.26 +0.2 248,975 + Xcc-8004.253.1 0.26 +0.1 248,975 + Xcc-8004.253.1 0.26 +0.0 248,976 - Xcc-8004.253.1 0.26 -1.2 248,976 - Xcc-8004.253.1 0.26 -0.2 249,200 - Xcc-8004.253.1 0.85 -1.1 249,200 - Xcc-8004.253.1 0.85 -0.5 249,200 - Xcc-8004.253.1 0.85 +0.0 249,254 + +0.3 249,255 - -0.6 249,318 - +0.2 249,722 + Xcc-8004.254.1 0.72 -0.0 249,723 - Xcc-8004.254.1 0.73 -2.5 249,754 + Xcc-8004.254.1 0.78 +0.4 249,754 + Xcc-8004.254.1 0.78 -0.4 249,754 + Xcc-8004.254.1 0.78 +0.6 249,755 - Xcc-8004.254.1 0.78 +1.5 249,755 - Xcc-8004.254.1 0.78 -0.2 249,755 - Xcc-8004.254.1 0.78 +0.7 249,755 - Xcc-8004.254.1 0.78 +0.8 249,755 - Xcc-8004.254.1 0.78 +0.6 249,755 - Xcc-8004.254.1 0.78 -0.0 249,755 - Xcc-8004.254.1 0.78 +0.9 249,755 - Xcc-8004.254.1 0.78 +2.3 249,942 - -0.2 249,942 - -0.9 249,942 - +0.3 249,942 - +0.6
Or see this region's nucleotide sequence