Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.2494.1 and Xcc-8004.2495.1 are separated by 136 nucleotides Xcc-8004.2495.1 and Xcc-8004.2496.1 are separated by 85 nucleotides Xcc-8004.2496.1 and Xcc-8004.2497.1 are separated by 32 nucleotides Xcc-8004.2497.1 and Xcc-8004.2498.1 are separated by 137 nucleotides
Xcc-8004.2494.1: Xcc-8004.2494.1 - Mobile element protein, at 2,422,070 to 2,422,750
Xcc-8004.2494.1
Xcc-8004.2495.1: Xcc-8004.2495.1 - hypothetical protein, at 2,422,887 to 2,423,021
Xcc-8004.2495.1
Xcc-8004.2496.1: Xcc-8004.2496.1 - Mobile element protein, at 2,423,107 to 2,423,379
Xcc-8004.2496.1
Xcc-8004.2497.1: Xcc-8004.2497.1 - Mobile element protein, at 2,423,412 to 2,424,245
Xcc-8004.2497.1
Xcc-8004.2498.1: Xcc-8004.2498.1 - Mobile element protein, at 2,424,383 to 2,425,363
Xcc-8004.2498.1
Position (kb)
2423
2424
2425 Strain fitness (log2 ratio)
-1
0
1
2
3 at 2422.919 kb on + strand, within Xcc-8004.2495.1 at 2422.919 kb on + strand, within Xcc-8004.2495.1 at 2422.985 kb on + strand, within Xcc-8004.2495.1 at 2423.002 kb on - strand, within Xcc-8004.2495.1 at 2423.078 kb on - strand at 2423.080 kb on - strand at 2423.860 kb on + strand, within Xcc-8004.2497.1 at 2424.237 kb on + strand at 2424.237 kb on + strand at 2424.243 kb on + strand at 2424.243 kb on + strand at 2424.347 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X remove 2,422,919 + Xcc-8004.2495.1 0.24 +0.1 2,422,919 + Xcc-8004.2495.1 0.24 +1.0 2,422,985 + Xcc-8004.2495.1 0.73 -0.6 2,423,002 - Xcc-8004.2495.1 0.85 +3.6 2,423,078 - -0.2 2,423,080 - -0.0 2,423,860 + Xcc-8004.2497.1 0.54 -0.9 2,424,237 + +0.6 2,424,237 + -0.5 2,424,243 + -0.6 2,424,243 + +0.9 2,424,347 - +0.0
Or see this region's nucleotide sequence