Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.248.1

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.247.1 and Xcc-8004.248.1 are separated by 287 nucleotidesXcc-8004.248.1 and Xcc-8004.249.1 overlap by 11 nucleotides Xcc-8004.247.1: Xcc-8004.247.1 - Glutamine synthetase type I (EC 6.3.1.2), at 241,887 to 243,296 Xcc-8004.247.1 Xcc-8004.248.1: Xcc-8004.248.1 - Nitrogen regulatory protein P-II, at 243,584 to 243,922 Xcc-8004.248.1 Xcc-8004.249.1: Xcc-8004.249.1 - Ammonium transporter, at 243,912 to 245,387 Xcc-8004.249.1 Position (kb) 243 244Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 243.401 kb on + strandat 243.401 kb on + strandat 243.402 kb on - strandat 243.402 kb on - strandat 243.402 kb on - strandat 243.402 kb on - strandat 243.402 kb on - strandat 243.402 kb on - strandat 243.577 kb on + strandat 243.578 kb on - strandat 243.665 kb on - strand, within Xcc-8004.248.1at 243.719 kb on + strand, within Xcc-8004.248.1at 243.720 kb on - strand, within Xcc-8004.248.1at 243.720 kb on - strand, within Xcc-8004.248.1at 243.734 kb on + strand, within Xcc-8004.248.1at 243.734 kb on + strand, within Xcc-8004.248.1at 243.734 kb on + strand, within Xcc-8004.248.1at 243.734 kb on + strand, within Xcc-8004.248.1at 243.734 kb on + strand, within Xcc-8004.248.1at 243.735 kb on - strand, within Xcc-8004.248.1at 243.735 kb on - strand, within Xcc-8004.248.1at 243.735 kb on - strand, within Xcc-8004.248.1at 243.735 kb on - strand, within Xcc-8004.248.1at 243.735 kb on - strand, within Xcc-8004.248.1at 243.887 kb on - strand, within Xcc-8004.248.1at 243.944 kb on + strandat 243.945 kb on - strandat 243.945 kb on - strandat 243.984 kb on + strandat 243.985 kb on - strandat 243.985 kb on - strandat 243.985 kb on - strandat 244.242 kb on + strand, within Xcc-8004.249.1at 244.242 kb on + strand, within Xcc-8004.249.1at 244.242 kb on + strand, within Xcc-8004.249.1at 244.242 kb on + strand, within Xcc-8004.249.1at 244.242 kb on + strand, within Xcc-8004.249.1at 244.242 kb on + strand, within Xcc-8004.249.1at 244.242 kb on + strand, within Xcc-8004.249.1at 244.243 kb on - strand, within Xcc-8004.249.1at 244.332 kb on + strand, within Xcc-8004.249.1at 244.332 kb on + strand, within Xcc-8004.249.1at 244.332 kb on + strand, within Xcc-8004.249.1at 244.332 kb on + strand, within Xcc-8004.249.1at 244.332 kb on + strand, within Xcc-8004.249.1at 244.332 kb on + strand, within Xcc-8004.249.1at 244.332 kb on + strand, within Xcc-8004.249.1at 244.332 kb on + strand, within Xcc-8004.249.1at 244.332 kb on + strand, within Xcc-8004.249.1at 244.332 kb on + strand, within Xcc-8004.249.1at 244.332 kb on + strand, within Xcc-8004.249.1at 244.332 kb on + strand, within Xcc-8004.249.1at 244.332 kb on + strand, within Xcc-8004.249.1at 244.332 kb on + strand, within Xcc-8004.249.1at 244.333 kb on - strand, within Xcc-8004.249.1at 244.333 kb on - strand, within Xcc-8004.249.1at 244.333 kb on - strand, within Xcc-8004.249.1at 244.333 kb on - strand, within Xcc-8004.249.1at 244.333 kb on - strand, within Xcc-8004.249.1at 244.333 kb on - strand, within Xcc-8004.249.1at 244.333 kb on - strand, within Xcc-8004.249.1at 244.333 kb on - strand, within Xcc-8004.249.1at 244.333 kb on - strand, within Xcc-8004.249.1at 244.333 kb on - strand, within Xcc-8004.249.1at 244.333 kb on - strand, within Xcc-8004.249.1at 244.333 kb on - strand, within Xcc-8004.249.1at 244.338 kb on + strand, within Xcc-8004.249.1at 244.338 kb on + strand, within Xcc-8004.249.1at 244.339 kb on - strand, within Xcc-8004.249.1at 244.339 kb on - strand, within Xcc-8004.249.1at 244.458 kb on + strand, within Xcc-8004.249.1at 244.458 kb on + strand, within Xcc-8004.249.1at 244.458 kb on + strand, within Xcc-8004.249.1at 244.458 kb on + strand, within Xcc-8004.249.1at 244.458 kb on + strand, within Xcc-8004.249.1at 244.459 kb on - strand, within Xcc-8004.249.1at 244.459 kb on - strand, within Xcc-8004.249.1at 244.459 kb on - strand, within Xcc-8004.249.1at 244.459 kb on - strand, within Xcc-8004.249.1at 244.459 kb on - strand, within Xcc-8004.249.1at 244.459 kb on - strand, within Xcc-8004.249.1at 244.459 kb on - strand, within Xcc-8004.249.1at 244.459 kb on - strand, within Xcc-8004.249.1at 244.585 kb on - strand, within Xcc-8004.249.1at 244.623 kb on + strand, within Xcc-8004.249.1at 244.624 kb on - strand, within Xcc-8004.249.1at 244.624 kb on - strand, within Xcc-8004.249.1at 244.624 kb on - strand, within Xcc-8004.249.1at 244.707 kb on + strand, within Xcc-8004.249.1at 244.707 kb on + strand, within Xcc-8004.249.1at 244.707 kb on + strand, within Xcc-8004.249.1at 244.708 kb on - strand, within Xcc-8004.249.1at 244.708 kb on - strand, within Xcc-8004.249.1at 244.708 kb on - strand, within Xcc-8004.249.1at 244.708 kb on - strand, within Xcc-8004.249.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X
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243,401 + +0.6
243,401 + +0.2
243,402 - -0.7
243,402 - +0.6
243,402 - +0.6
243,402 - -1.0
243,402 - +1.2
243,402 - -0.4
243,577 + +0.3
243,578 - +1.8
243,665 - Xcc-8004.248.1 0.24 +0.8
243,719 + Xcc-8004.248.1 0.40 +0.1
243,720 - Xcc-8004.248.1 0.40 -0.3
243,720 - Xcc-8004.248.1 0.40 -1.2
243,734 + Xcc-8004.248.1 0.44 -0.1
243,734 + Xcc-8004.248.1 0.44 +1.5
243,734 + Xcc-8004.248.1 0.44 -0.3
243,734 + Xcc-8004.248.1 0.44 -0.3
243,734 + Xcc-8004.248.1 0.44 -1.9
243,735 - Xcc-8004.248.1 0.45 -0.2
243,735 - Xcc-8004.248.1 0.45 -0.7
243,735 - Xcc-8004.248.1 0.45 -0.5
243,735 - Xcc-8004.248.1 0.45 -0.6
243,735 - Xcc-8004.248.1 0.45 -0.4
243,887 - Xcc-8004.248.1 0.89 +0.3
243,944 + +1.1
243,945 - -0.9
243,945 - +0.5
243,984 + +0.6
243,985 - +0.3
243,985 - +1.2
243,985 - +0.1
244,242 + Xcc-8004.249.1 0.22 +0.2
244,242 + Xcc-8004.249.1 0.22 -0.0
244,242 + Xcc-8004.249.1 0.22 +3.0
244,242 + Xcc-8004.249.1 0.22 -0.4
244,242 + Xcc-8004.249.1 0.22 -0.6
244,242 + Xcc-8004.249.1 0.22 +0.5
244,242 + Xcc-8004.249.1 0.22 -1.5
244,243 - Xcc-8004.249.1 0.22 -2.2
244,332 + Xcc-8004.249.1 0.28 +0.1
244,332 + Xcc-8004.249.1 0.28 -1.7
244,332 + Xcc-8004.249.1 0.28 -1.5
244,332 + Xcc-8004.249.1 0.28 +1.3
244,332 + Xcc-8004.249.1 0.28 -0.0
244,332 + Xcc-8004.249.1 0.28 -1.6
244,332 + Xcc-8004.249.1 0.28 -0.6
244,332 + Xcc-8004.249.1 0.28 -0.4
244,332 + Xcc-8004.249.1 0.28 +0.1
244,332 + Xcc-8004.249.1 0.28 +0.1
244,332 + Xcc-8004.249.1 0.28 -0.8
244,332 + Xcc-8004.249.1 0.28 -0.5
244,332 + Xcc-8004.249.1 0.28 +0.5
244,332 + Xcc-8004.249.1 0.28 +0.4
244,333 - Xcc-8004.249.1 0.29 +0.8
244,333 - Xcc-8004.249.1 0.29 -2.9
244,333 - Xcc-8004.249.1 0.29 -0.1
244,333 - Xcc-8004.249.1 0.29 -0.1
244,333 - Xcc-8004.249.1 0.29 +0.8
244,333 - Xcc-8004.249.1 0.29 +1.5
244,333 - Xcc-8004.249.1 0.29 -0.5
244,333 - Xcc-8004.249.1 0.29 +1.5
244,333 - Xcc-8004.249.1 0.29 -0.7
244,333 - Xcc-8004.249.1 0.29 +0.6
244,333 - Xcc-8004.249.1 0.29 -0.3
244,333 - Xcc-8004.249.1 0.29 -1.0
244,338 + Xcc-8004.249.1 0.29 -0.8
244,338 + Xcc-8004.249.1 0.29 +0.9
244,339 - Xcc-8004.249.1 0.29 +0.3
244,339 - Xcc-8004.249.1 0.29 -1.1
244,458 + Xcc-8004.249.1 0.37 -0.1
244,458 + Xcc-8004.249.1 0.37 -0.4
244,458 + Xcc-8004.249.1 0.37 -0.9
244,458 + Xcc-8004.249.1 0.37 +0.7
244,458 + Xcc-8004.249.1 0.37 -0.9
244,459 - Xcc-8004.249.1 0.37 +0.3
244,459 - Xcc-8004.249.1 0.37 +0.8
244,459 - Xcc-8004.249.1 0.37 -1.2
244,459 - Xcc-8004.249.1 0.37 -0.4
244,459 - Xcc-8004.249.1 0.37 -0.4
244,459 - Xcc-8004.249.1 0.37 -0.3
244,459 - Xcc-8004.249.1 0.37 -2.3
244,459 - Xcc-8004.249.1 0.37 +0.4
244,585 - Xcc-8004.249.1 0.46 -0.6
244,623 + Xcc-8004.249.1 0.48 -0.2
244,624 - Xcc-8004.249.1 0.48 +0.5
244,624 - Xcc-8004.249.1 0.48 +0.4
244,624 - Xcc-8004.249.1 0.48 -0.9
244,707 + Xcc-8004.249.1 0.54 -1.9
244,707 + Xcc-8004.249.1 0.54 -0.4
244,707 + Xcc-8004.249.1 0.54 -0.4
244,708 - Xcc-8004.249.1 0.54 +0.0
244,708 - Xcc-8004.249.1 0.54 +0.4
244,708 - Xcc-8004.249.1 0.54 +0.5
244,708 - Xcc-8004.249.1 0.54 +0.4

Or see this region's nucleotide sequence