Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.2406.1

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.2405.1 and Xcc-8004.2406.1 are separated by 318 nucleotidesXcc-8004.2406.1 and Xcc-8004.2408.1 are separated by 143 nucleotidesXcc-8004.2408.1 and Xcc-8004.2409.1 overlap by 4 nucleotides Xcc-8004.2405.1: Xcc-8004.2405.1 - Alpha/beta hydrolase fold (EC 3.8.1.5), at 2,349,987 to 2,350,979 Xcc-8004.2405.1 Xcc-8004.2406.1: Xcc-8004.2406.1 - Manganese transport protein MntH, at 2,351,298 to 2,352,632 Xcc-8004.2406.1 Xcc-8004.2408.1: Xcc-8004.2408.1 - Mn-dependent transcriptional regulator MntR, at 2,352,776 to 2,353,243 Xcc-8004.2408.1 Xcc-8004.2409.1: Xcc-8004.2409.1 - tRNA-specific adenosine-34 deaminase (EC 3.5.4.-), at 2,353,240 to 2,353,755 Xcc-8004.2409.1 Position (kb) 2351 2352 2353Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 2350.342 kb on + strand, within Xcc-8004.2405.1at 2350.390 kb on - strand, within Xcc-8004.2405.1at 2350.498 kb on + strand, within Xcc-8004.2405.1at 2350.498 kb on + strand, within Xcc-8004.2405.1at 2350.498 kb on + strand, within Xcc-8004.2405.1at 2350.498 kb on + strand, within Xcc-8004.2405.1at 2350.498 kb on + strand, within Xcc-8004.2405.1at 2350.499 kb on - strand, within Xcc-8004.2405.1at 2350.499 kb on - strand, within Xcc-8004.2405.1at 2350.499 kb on - strand, within Xcc-8004.2405.1at 2350.499 kb on - strand, within Xcc-8004.2405.1at 2350.591 kb on + strand, within Xcc-8004.2405.1at 2350.592 kb on - strand, within Xcc-8004.2405.1at 2350.592 kb on - strand, within Xcc-8004.2405.1at 2350.592 kb on - strand, within Xcc-8004.2405.1at 2350.592 kb on - strand, within Xcc-8004.2405.1at 2350.592 kb on - strand, within Xcc-8004.2405.1at 2350.592 kb on - strand, within Xcc-8004.2405.1at 2350.592 kb on - strand, within Xcc-8004.2405.1at 2350.768 kb on + strand, within Xcc-8004.2405.1at 2350.769 kb on - strand, within Xcc-8004.2405.1at 2350.769 kb on - strand, within Xcc-8004.2405.1at 2350.769 kb on - strand, within Xcc-8004.2405.1at 2350.769 kb on - strand, within Xcc-8004.2405.1at 2350.769 kb on - strand, within Xcc-8004.2405.1at 2350.769 kb on - strand, within Xcc-8004.2405.1at 2350.817 kb on + strand, within Xcc-8004.2405.1at 2350.817 kb on + strand, within Xcc-8004.2405.1at 2350.818 kb on - strand, within Xcc-8004.2405.1at 2351.096 kb on - strandat 2351.096 kb on - strandat 2351.096 kb on - strandat 2351.194 kb on + strandat 2351.195 kb on - strandat 2351.195 kb on - strandat 2351.195 kb on - strandat 2351.195 kb on - strandat 2351.232 kb on + strandat 2351.232 kb on + strandat 2351.233 kb on - strandat 2351.233 kb on - strandat 2351.233 kb on - strandat 2351.515 kb on + strand, within Xcc-8004.2406.1at 2351.515 kb on + strand, within Xcc-8004.2406.1at 2351.516 kb on - strand, within Xcc-8004.2406.1at 2351.516 kb on - strand, within Xcc-8004.2406.1at 2351.516 kb on - strand, within Xcc-8004.2406.1at 2351.535 kb on + strand, within Xcc-8004.2406.1at 2351.535 kb on + strand, within Xcc-8004.2406.1at 2351.926 kb on + strand, within Xcc-8004.2406.1at 2351.926 kb on + strand, within Xcc-8004.2406.1at 2351.926 kb on + strand, within Xcc-8004.2406.1at 2351.926 kb on + strand, within Xcc-8004.2406.1at 2351.927 kb on - strand, within Xcc-8004.2406.1at 2351.927 kb on - strand, within Xcc-8004.2406.1at 2351.927 kb on - strand, within Xcc-8004.2406.1at 2351.933 kb on + strand, within Xcc-8004.2406.1at 2351.934 kb on - strand, within Xcc-8004.2406.1at 2351.975 kb on - strand, within Xcc-8004.2406.1at 2351.975 kb on - strand, within Xcc-8004.2406.1at 2352.476 kb on + strand, within Xcc-8004.2406.1at 2352.476 kb on + strand, within Xcc-8004.2406.1at 2352.476 kb on + strand, within Xcc-8004.2406.1at 2352.476 kb on + strand, within Xcc-8004.2406.1at 2352.476 kb on + strand, within Xcc-8004.2406.1at 2352.476 kb on + strand, within Xcc-8004.2406.1at 2352.476 kb on + strand, within Xcc-8004.2406.1at 2352.476 kb on + strand, within Xcc-8004.2406.1at 2352.476 kb on + strand, within Xcc-8004.2406.1at 2352.477 kb on - strand, within Xcc-8004.2406.1at 2352.477 kb on - strand, within Xcc-8004.2406.1at 2352.477 kb on - strand, within Xcc-8004.2406.1at 2352.477 kb on - strand, within Xcc-8004.2406.1at 2352.477 kb on - strand, within Xcc-8004.2406.1at 2352.477 kb on - strand, within Xcc-8004.2406.1at 2352.477 kb on - strand, within Xcc-8004.2406.1at 2352.477 kb on - strand, within Xcc-8004.2406.1at 2352.477 kb on - strand, within Xcc-8004.2406.1at 2352.477 kb on - strand, within Xcc-8004.2406.1at 2352.477 kb on - strand, within Xcc-8004.2406.1at 2352.478 kb on + strand, within Xcc-8004.2406.1at 2352.478 kb on + strand, within Xcc-8004.2406.1at 2352.478 kb on + strand, within Xcc-8004.2406.1at 2352.478 kb on + strand, within Xcc-8004.2406.1at 2352.478 kb on + strand, within Xcc-8004.2406.1at 2352.478 kb on + strand, within Xcc-8004.2406.1at 2352.478 kb on + strand, within Xcc-8004.2406.1at 2352.479 kb on - strand, within Xcc-8004.2406.1at 2352.479 kb on - strand, within Xcc-8004.2406.1at 2352.479 kb on - strand, within Xcc-8004.2406.1at 2352.479 kb on - strand, within Xcc-8004.2406.1at 2352.479 kb on - strand, within Xcc-8004.2406.1at 2352.496 kb on + strand, within Xcc-8004.2406.1at 2352.496 kb on + strand, within Xcc-8004.2406.1at 2352.496 kb on + strand, within Xcc-8004.2406.1at 2352.496 kb on + strand, within Xcc-8004.2406.1at 2352.496 kb on + strand, within Xcc-8004.2406.1at 2352.497 kb on - strand, within Xcc-8004.2406.1at 2352.497 kb on - strand, within Xcc-8004.2406.1at 2352.497 kb on - strand, within Xcc-8004.2406.1at 2352.497 kb on - strand, within Xcc-8004.2406.1at 2352.665 kb on + strandat 2352.666 kb on - strandat 2352.667 kb on + strandat 2352.667 kb on + strandat 2352.667 kb on + strandat 2352.667 kb on + strandat 2352.667 kb on + strandat 2352.668 kb on - strandat 2352.677 kb on + strandat 2352.677 kb on + strandat 2352.677 kb on + strandat 2352.707 kb on + strandat 2352.707 kb on + strandat 2352.707 kb on + strandat 2352.707 kb on + strandat 2352.708 kb on - strandat 2352.708 kb on - strandat 2352.708 kb on - strandat 2352.708 kb on - strandat 2352.732 kb on + strandat 2352.732 kb on + strandat 2352.732 kb on + strandat 2352.732 kb on + strandat 2352.733 kb on - strandat 2352.733 kb on - strandat 2352.733 kb on - strandat 2352.733 kb on - strandat 2352.733 kb on - strandat 2352.890 kb on + strand, within Xcc-8004.2408.1at 2352.890 kb on + strand, within Xcc-8004.2408.1at 2352.890 kb on + strand, within Xcc-8004.2408.1at 2352.890 kb on + strand, within Xcc-8004.2408.1at 2352.890 kb on + strand, within Xcc-8004.2408.1at 2352.890 kb on + strand, within Xcc-8004.2408.1at 2352.890 kb on + strand, within Xcc-8004.2408.1at 2352.960 kb on + strand, within Xcc-8004.2408.1at 2352.961 kb on - strand, within Xcc-8004.2408.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X
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2,350,342 + Xcc-8004.2405.1 0.36 -1.2
2,350,390 - Xcc-8004.2405.1 0.41 +0.6
2,350,498 + Xcc-8004.2405.1 0.51 -2.3
2,350,498 + Xcc-8004.2405.1 0.51 +0.5
2,350,498 + Xcc-8004.2405.1 0.51 -0.5
2,350,498 + Xcc-8004.2405.1 0.51 -1.5
2,350,498 + Xcc-8004.2405.1 0.51 +1.6
2,350,499 - Xcc-8004.2405.1 0.52 -0.9
2,350,499 - Xcc-8004.2405.1 0.52 +0.5
2,350,499 - Xcc-8004.2405.1 0.52 -0.2
2,350,499 - Xcc-8004.2405.1 0.52 +1.0
2,350,591 + Xcc-8004.2405.1 0.61 -1.7
2,350,592 - Xcc-8004.2405.1 0.61 +0.8
2,350,592 - Xcc-8004.2405.1 0.61 -0.9
2,350,592 - Xcc-8004.2405.1 0.61 -0.7
2,350,592 - Xcc-8004.2405.1 0.61 +0.4
2,350,592 - Xcc-8004.2405.1 0.61 -0.3
2,350,592 - Xcc-8004.2405.1 0.61 +1.1
2,350,592 - Xcc-8004.2405.1 0.61 -0.6
2,350,768 + Xcc-8004.2405.1 0.79 +0.3
2,350,769 - Xcc-8004.2405.1 0.79 +0.8
2,350,769 - Xcc-8004.2405.1 0.79 -1.6
2,350,769 - Xcc-8004.2405.1 0.79 +0.6
2,350,769 - Xcc-8004.2405.1 0.79 -1.0
2,350,769 - Xcc-8004.2405.1 0.79 +0.5
2,350,769 - Xcc-8004.2405.1 0.79 -0.5
2,350,817 + Xcc-8004.2405.1 0.84 -0.9
2,350,817 + Xcc-8004.2405.1 0.84 -0.6
2,350,818 - Xcc-8004.2405.1 0.84 -1.5
2,351,096 - +0.5
2,351,096 - -2.5
2,351,096 - +1.1
2,351,194 + +1.0
2,351,195 - +0.7
2,351,195 - -0.4
2,351,195 - +0.6
2,351,195 - +0.5
2,351,232 + +0.1
2,351,232 + +0.1
2,351,233 - -0.2
2,351,233 - -0.1
2,351,233 - -0.6
2,351,515 + Xcc-8004.2406.1 0.16 -1.0
2,351,515 + Xcc-8004.2406.1 0.16 +1.1
2,351,516 - Xcc-8004.2406.1 0.16 -2.6
2,351,516 - Xcc-8004.2406.1 0.16 -1.6
2,351,516 - Xcc-8004.2406.1 0.16 -0.3
2,351,535 + Xcc-8004.2406.1 0.18 -3.1
2,351,535 + Xcc-8004.2406.1 0.18 -1.9
2,351,926 + Xcc-8004.2406.1 0.47 -1.6
2,351,926 + Xcc-8004.2406.1 0.47 -2.1
2,351,926 + Xcc-8004.2406.1 0.47 -1.4
2,351,926 + Xcc-8004.2406.1 0.47 -2.5
2,351,927 - Xcc-8004.2406.1 0.47 -1.3
2,351,927 - Xcc-8004.2406.1 0.47 -2.5
2,351,927 - Xcc-8004.2406.1 0.47 -2.1
2,351,933 + Xcc-8004.2406.1 0.48 -2.8
2,351,934 - Xcc-8004.2406.1 0.48 -3.3
2,351,975 - Xcc-8004.2406.1 0.51 -2.1
2,351,975 - Xcc-8004.2406.1 0.51 -1.2
2,352,476 + Xcc-8004.2406.1 0.88 -0.9
2,352,476 + Xcc-8004.2406.1 0.88 -3.0
2,352,476 + Xcc-8004.2406.1 0.88 -1.7
2,352,476 + Xcc-8004.2406.1 0.88 -3.0
2,352,476 + Xcc-8004.2406.1 0.88 -2.8
2,352,476 + Xcc-8004.2406.1 0.88 -2.4
2,352,476 + Xcc-8004.2406.1 0.88 -0.7
2,352,476 + Xcc-8004.2406.1 0.88 -1.7
2,352,476 + Xcc-8004.2406.1 0.88 -2.4
2,352,477 - Xcc-8004.2406.1 0.88 -2.4
2,352,477 - Xcc-8004.2406.1 0.88 -0.5
2,352,477 - Xcc-8004.2406.1 0.88 +0.8
2,352,477 - Xcc-8004.2406.1 0.88 -0.6
2,352,477 - Xcc-8004.2406.1 0.88 -2.4
2,352,477 - Xcc-8004.2406.1 0.88 -3.9
2,352,477 - Xcc-8004.2406.1 0.88 +0.0
2,352,477 - Xcc-8004.2406.1 0.88 -3.5
2,352,477 - Xcc-8004.2406.1 0.88 -2.7
2,352,477 - Xcc-8004.2406.1 0.88 +0.5
2,352,477 - Xcc-8004.2406.1 0.88 -2.5
2,352,478 + Xcc-8004.2406.1 0.88 -1.1
2,352,478 + Xcc-8004.2406.1 0.88 -2.1
2,352,478 + Xcc-8004.2406.1 0.88 -2.9
2,352,478 + Xcc-8004.2406.1 0.88 -2.3
2,352,478 + Xcc-8004.2406.1 0.88 -2.6
2,352,478 + Xcc-8004.2406.1 0.88 -2.9
2,352,478 + Xcc-8004.2406.1 0.88 -3.1
2,352,479 - Xcc-8004.2406.1 0.88 -0.1
2,352,479 - Xcc-8004.2406.1 0.88 -3.1
2,352,479 - Xcc-8004.2406.1 0.88 -1.9
2,352,479 - Xcc-8004.2406.1 0.88 -2.4
2,352,479 - Xcc-8004.2406.1 0.88 -2.4
2,352,496 + Xcc-8004.2406.1 0.90 -2.5
2,352,496 + Xcc-8004.2406.1 0.90 -1.8
2,352,496 + Xcc-8004.2406.1 0.90 -1.8
2,352,496 + Xcc-8004.2406.1 0.90 -3.0
2,352,496 + Xcc-8004.2406.1 0.90 -2.6
2,352,497 - Xcc-8004.2406.1 0.90 -0.1
2,352,497 - Xcc-8004.2406.1 0.90 -2.3
2,352,497 - Xcc-8004.2406.1 0.90 -1.0
2,352,497 - Xcc-8004.2406.1 0.90 -4.4
2,352,665 + -0.1
2,352,666 - +0.1
2,352,667 + +0.9
2,352,667 + -0.3
2,352,667 + -1.5
2,352,667 + +0.8
2,352,667 + +0.8
2,352,668 - -0.0
2,352,677 + +1.1
2,352,677 + -0.2
2,352,677 + -0.3
2,352,707 + -1.4
2,352,707 + -1.6
2,352,707 + -1.2
2,352,707 + -0.0
2,352,708 - -1.4
2,352,708 - +0.1
2,352,708 - +0.4
2,352,708 - -0.5
2,352,732 + +0.1
2,352,732 + -0.1
2,352,732 + -0.9
2,352,732 + -0.3
2,352,733 - -1.0
2,352,733 - -0.8
2,352,733 - -0.9
2,352,733 - -1.0
2,352,733 - +1.1
2,352,890 + Xcc-8004.2408.1 0.24 -0.0
2,352,890 + Xcc-8004.2408.1 0.24 -0.9
2,352,890 + Xcc-8004.2408.1 0.24 +0.0
2,352,890 + Xcc-8004.2408.1 0.24 +2.1
2,352,890 + Xcc-8004.2408.1 0.24 -0.4
2,352,890 + Xcc-8004.2408.1 0.24 +0.3
2,352,890 + Xcc-8004.2408.1 0.24 +0.4
2,352,960 + Xcc-8004.2408.1 0.39 -0.7
2,352,961 - Xcc-8004.2408.1 0.40 +1.0

Or see this region's nucleotide sequence