Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.235.1 and Xcc-8004.236.1 are separated by 116 nucleotides Xcc-8004.236.1 and Xcc-8004.237.1 are separated by 54 nucleotides Xcc-8004.237.1 and Xcc-8004.238.1 are separated by 57 nucleotides
Xcc-8004.235.1: Xcc-8004.235.1 - ComA operon protein 2, at 232,923 to 233,351
Xcc-8004.235.1
Xcc-8004.236.1: Xcc-8004.236.1 - 1-acyl-sn-glycerol-3-phosphate acyltransferase (EC 2.3.1.51), at 233,468 to 234,271
Xcc-8004.236.1
Xcc-8004.237.1: Xcc-8004.237.1 - FIG01211085: hypothetical protein, at 234,326 to 235,312
Xcc-8004.237.1
Xcc-8004.238.1: Xcc-8004.238.1 - Adenylate cyclase (EC 4.6.1.1), at 235,370 to 237,442
Xcc-8004.238.1
Position (kb) 234
235
236 Strain fitness (log2 ratio) -2
-1
0
1
2 at 233.428 kb on + strand at 233.428 kb on + strand at 233.428 kb on + strand at 233.428 kb on + strand at 233.428 kb on + strand at 233.428 kb on + strand at 233.428 kb on + strand at 233.429 kb on - strand at 233.429 kb on - strand at 233.429 kb on - strand at 233.528 kb on + strand at 233.529 kb on - strand at 233.529 kb on - strand at 234.133 kb on + strand, within Xcc-8004.236.1 at 234.133 kb on + strand, within Xcc-8004.236.1 at 234.134 kb on - strand, within Xcc-8004.236.1 at 234.134 kb on - strand, within Xcc-8004.236.1 at 234.342 kb on - strand at 234.342 kb on - strand at 234.342 kb on - strand at 234.342 kb on - strand at 234.364 kb on + strand at 234.364 kb on + strand at 234.365 kb on - strand at 234.535 kb on + strand, within Xcc-8004.237.1 at 234.535 kb on + strand, within Xcc-8004.237.1 at 234.535 kb on + strand, within Xcc-8004.237.1 at 234.535 kb on + strand, within Xcc-8004.237.1 at 234.536 kb on - strand, within Xcc-8004.237.1 at 234.581 kb on + strand, within Xcc-8004.237.1 at 234.581 kb on + strand, within Xcc-8004.237.1 at 234.581 kb on + strand, within Xcc-8004.237.1 at 234.581 kb on + strand, within Xcc-8004.237.1 at 234.581 kb on + strand, within Xcc-8004.237.1 at 234.581 kb on + strand, within Xcc-8004.237.1 at 234.581 kb on + strand, within Xcc-8004.237.1 at 234.581 kb on + strand, within Xcc-8004.237.1 at 234.581 kb on + strand, within Xcc-8004.237.1 at 234.581 kb on + strand, within Xcc-8004.237.1 at 234.581 kb on + strand, within Xcc-8004.237.1 at 234.581 kb on + strand, within Xcc-8004.237.1 at 234.581 kb on + strand, within Xcc-8004.237.1 at 234.582 kb on - strand, within Xcc-8004.237.1 at 234.582 kb on - strand, within Xcc-8004.237.1 at 234.582 kb on - strand, within Xcc-8004.237.1 at 234.582 kb on - strand, within Xcc-8004.237.1 at 234.582 kb on - strand, within Xcc-8004.237.1 at 234.582 kb on - strand, within Xcc-8004.237.1 at 234.582 kb on - strand, within Xcc-8004.237.1 at 234.582 kb on - strand, within Xcc-8004.237.1 at 234.582 kb on - strand, within Xcc-8004.237.1 at 234.582 kb on - strand, within Xcc-8004.237.1 at 234.582 kb on - strand, within Xcc-8004.237.1 at 234.582 kb on - strand, within Xcc-8004.237.1 at 234.621 kb on - strand, within Xcc-8004.237.1 at 234.770 kb on + strand, within Xcc-8004.237.1 at 234.911 kb on + strand, within Xcc-8004.237.1 at 234.911 kb on + strand, within Xcc-8004.237.1 at 234.911 kb on + strand, within Xcc-8004.237.1 at 234.911 kb on + strand, within Xcc-8004.237.1 at 234.911 kb on + strand, within Xcc-8004.237.1 at 234.912 kb on - strand, within Xcc-8004.237.1 at 234.912 kb on - strand, within Xcc-8004.237.1 at 234.912 kb on - strand, within Xcc-8004.237.1 at 234.912 kb on - strand, within Xcc-8004.237.1 at 234.912 kb on - strand, within Xcc-8004.237.1 at 234.920 kb on + strand, within Xcc-8004.237.1 at 234.920 kb on + strand, within Xcc-8004.237.1 at 234.920 kb on + strand, within Xcc-8004.237.1 at 234.920 kb on + strand, within Xcc-8004.237.1 at 234.920 kb on + strand, within Xcc-8004.237.1 at 234.920 kb on + strand, within Xcc-8004.237.1 at 234.920 kb on + strand, within Xcc-8004.237.1 at 234.921 kb on - strand, within Xcc-8004.237.1 at 234.921 kb on - strand, within Xcc-8004.237.1 at 234.951 kb on + strand, within Xcc-8004.237.1 at 234.986 kb on + strand, within Xcc-8004.237.1 at 234.986 kb on + strand, within Xcc-8004.237.1 at 234.987 kb on - strand, within Xcc-8004.237.1 at 235.073 kb on + strand, within Xcc-8004.237.1 at 235.073 kb on + strand, within Xcc-8004.237.1 at 235.073 kb on + strand, within Xcc-8004.237.1 at 235.073 kb on + strand, within Xcc-8004.237.1 at 235.073 kb on + strand, within Xcc-8004.237.1 at 235.073 kb on + strand, within Xcc-8004.237.1 at 235.074 kb on - strand, within Xcc-8004.237.1 at 235.074 kb on - strand, within Xcc-8004.237.1 at 235.074 kb on - strand, within Xcc-8004.237.1 at 235.074 kb on - strand, within Xcc-8004.237.1 at 235.085 kb on + strand, within Xcc-8004.237.1 at 235.085 kb on + strand, within Xcc-8004.237.1 at 235.085 kb on + strand, within Xcc-8004.237.1 at 235.085 kb on + strand, within Xcc-8004.237.1 at 235.085 kb on + strand, within Xcc-8004.237.1 at 235.085 kb on + strand, within Xcc-8004.237.1 at 235.085 kb on + strand, within Xcc-8004.237.1 at 235.085 kb on + strand, within Xcc-8004.237.1 at 235.085 kb on + strand, within Xcc-8004.237.1 at 235.085 kb on + strand, within Xcc-8004.237.1 at 235.086 kb on - strand, within Xcc-8004.237.1 at 235.086 kb on - strand, within Xcc-8004.237.1 at 235.086 kb on - strand, within Xcc-8004.237.1 at 235.086 kb on - strand, within Xcc-8004.237.1 at 235.086 kb on - strand, within Xcc-8004.237.1 at 235.086 kb on - strand, within Xcc-8004.237.1 at 235.086 kb on - strand, within Xcc-8004.237.1 at 235.086 kb on - strand, within Xcc-8004.237.1 at 235.086 kb on - strand, within Xcc-8004.237.1 at 235.086 kb on - strand, within Xcc-8004.237.1 at 235.086 kb on - strand, within Xcc-8004.237.1 at 235.086 kb on - strand, within Xcc-8004.237.1 at 235.086 kb on - strand, within Xcc-8004.237.1 at 235.310 kb on + strand at 235.310 kb on + strand at 235.336 kb on + strand at 235.336 kb on + strand at 235.336 kb on + strand at 235.337 kb on - strand at 235.337 kb on - strand at 235.337 kb on - strand at 235.337 kb on - strand at 235.337 kb on - strand at 235.337 kb on - strand at 235.337 kb on - strand at 235.341 kb on + strand at 235.341 kb on + strand at 235.341 kb on + strand at 235.341 kb on + strand at 235.341 kb on + strand at 235.676 kb on + strand, within Xcc-8004.238.1 at 235.676 kb on + strand, within Xcc-8004.238.1 at 235.676 kb on + strand, within Xcc-8004.238.1 at 235.676 kb on + strand, within Xcc-8004.238.1 at 235.676 kb on + strand, within Xcc-8004.238.1 at 235.676 kb on + strand, within Xcc-8004.238.1 at 235.676 kb on + strand, within Xcc-8004.238.1 at 235.676 kb on + strand, within Xcc-8004.238.1 at 235.676 kb on + strand, within Xcc-8004.238.1 at 235.676 kb on + strand, within Xcc-8004.238.1 at 235.677 kb on - strand, within Xcc-8004.238.1 at 235.677 kb on - strand, within Xcc-8004.238.1 at 235.677 kb on - strand, within Xcc-8004.238.1 at 235.677 kb on - strand, within Xcc-8004.238.1 at 235.677 kb on - strand, within Xcc-8004.238.1 at 235.677 kb on - strand, within Xcc-8004.238.1 at 235.776 kb on + strand, within Xcc-8004.238.1 at 235.777 kb on - strand, within Xcc-8004.238.1 at 235.777 kb on - strand, within Xcc-8004.238.1 at 235.777 kb on - strand, within Xcc-8004.238.1 at 235.777 kb on - strand, within Xcc-8004.238.1 at 235.901 kb on + strand, within Xcc-8004.238.1 at 235.902 kb on - strand, within Xcc-8004.238.1 at 235.902 kb on - strand, within Xcc-8004.238.1 at 235.902 kb on - strand, within Xcc-8004.238.1 at 235.902 kb on - strand, within Xcc-8004.238.1 at 235.902 kb on - strand, within Xcc-8004.238.1 at 235.902 kb on - strand, within Xcc-8004.238.1 at 235.902 kb on - strand, within Xcc-8004.238.1
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X remove 233,428 + -1.2 233,428 + +0.1 233,428 + -0.2 233,428 + -1.1 233,428 + +0.8 233,428 + +0.3 233,428 + +0.4 233,429 - +1.9 233,429 - +1.0 233,429 - +0.3 233,528 + -1.3 233,529 - +2.5 233,529 - +0.0 234,133 + Xcc-8004.236.1 0.83 -0.3 234,133 + Xcc-8004.236.1 0.83 -1.1 234,134 - Xcc-8004.236.1 0.83 +0.5 234,134 - Xcc-8004.236.1 0.83 +0.3 234,342 - -1.1 234,342 - -1.3 234,342 - -0.7 234,342 - -0.6 234,364 + -0.6 234,364 + +0.8 234,365 - +0.0 234,535 + Xcc-8004.237.1 0.21 +0.8 234,535 + Xcc-8004.237.1 0.21 +0.2 234,535 + Xcc-8004.237.1 0.21 +0.1 234,535 + Xcc-8004.237.1 0.21 +0.2 234,536 - Xcc-8004.237.1 0.21 -0.5 234,581 + Xcc-8004.237.1 0.26 -0.9 234,581 + Xcc-8004.237.1 0.26 -1.1 234,581 + Xcc-8004.237.1 0.26 -0.3 234,581 + Xcc-8004.237.1 0.26 -0.4 234,581 + Xcc-8004.237.1 0.26 -0.6 234,581 + Xcc-8004.237.1 0.26 +0.1 234,581 + Xcc-8004.237.1 0.26 +0.6 234,581 + Xcc-8004.237.1 0.26 -0.2 234,581 + Xcc-8004.237.1 0.26 +0.6 234,581 + Xcc-8004.237.1 0.26 -0.1 234,581 + Xcc-8004.237.1 0.26 +0.0 234,581 + Xcc-8004.237.1 0.26 +0.6 234,581 + Xcc-8004.237.1 0.26 +0.4 234,582 - Xcc-8004.237.1 0.26 +1.5 234,582 - Xcc-8004.237.1 0.26 +1.0 234,582 - Xcc-8004.237.1 0.26 -1.8 234,582 - Xcc-8004.237.1 0.26 +0.0 234,582 - Xcc-8004.237.1 0.26 +0.7 234,582 - Xcc-8004.237.1 0.26 -0.7 234,582 - Xcc-8004.237.1 0.26 +0.5 234,582 - Xcc-8004.237.1 0.26 +1.2 234,582 - Xcc-8004.237.1 0.26 +0.2 234,582 - Xcc-8004.237.1 0.26 +0.3 234,582 - Xcc-8004.237.1 0.26 +0.5 234,582 - Xcc-8004.237.1 0.26 +0.2 234,621 - Xcc-8004.237.1 0.30 +0.1 234,770 + Xcc-8004.237.1 0.45 +0.3 234,911 + Xcc-8004.237.1 0.59 +0.3 234,911 + Xcc-8004.237.1 0.59 -0.3 234,911 + Xcc-8004.237.1 0.59 +1.5 234,911 + Xcc-8004.237.1 0.59 -0.1 234,911 + Xcc-8004.237.1 0.59 +1.0 234,912 - Xcc-8004.237.1 0.59 +0.7 234,912 - Xcc-8004.237.1 0.59 -0.9 234,912 - Xcc-8004.237.1 0.59 -0.1 234,912 - Xcc-8004.237.1 0.59 +1.6 234,912 - Xcc-8004.237.1 0.59 +1.1 234,920 + Xcc-8004.237.1 0.60 -0.1 234,920 + Xcc-8004.237.1 0.60 +1.2 234,920 + Xcc-8004.237.1 0.60 -1.4 234,920 + Xcc-8004.237.1 0.60 -0.9 234,920 + Xcc-8004.237.1 0.60 -0.1 234,920 + Xcc-8004.237.1 0.60 -0.5 234,920 + Xcc-8004.237.1 0.60 -1.9 234,921 - Xcc-8004.237.1 0.60 +0.7 234,921 - Xcc-8004.237.1 0.60 -0.4 234,951 + Xcc-8004.237.1 0.63 +1.0 234,986 + Xcc-8004.237.1 0.67 -0.8 234,986 + Xcc-8004.237.1 0.67 -0.0 234,987 - Xcc-8004.237.1 0.67 -0.4 235,073 + Xcc-8004.237.1 0.76 +0.8 235,073 + Xcc-8004.237.1 0.76 +0.9 235,073 + Xcc-8004.237.1 0.76 +0.0 235,073 + Xcc-8004.237.1 0.76 -1.7 235,073 + Xcc-8004.237.1 0.76 +1.0 235,073 + Xcc-8004.237.1 0.76 -0.5 235,074 - Xcc-8004.237.1 0.76 -0.1 235,074 - Xcc-8004.237.1 0.76 +1.1 235,074 - Xcc-8004.237.1 0.76 +0.0 235,074 - Xcc-8004.237.1 0.76 +1.2 235,085 + Xcc-8004.237.1 0.77 -1.9 235,085 + Xcc-8004.237.1 0.77 -2.6 235,085 + Xcc-8004.237.1 0.77 -0.6 235,085 + Xcc-8004.237.1 0.77 -0.0 235,085 + Xcc-8004.237.1 0.77 -0.2 235,085 + Xcc-8004.237.1 0.77 -0.6 235,085 + Xcc-8004.237.1 0.77 -0.7 235,085 + Xcc-8004.237.1 0.77 +0.8 235,085 + Xcc-8004.237.1 0.77 +1.2 235,085 + Xcc-8004.237.1 0.77 -0.1 235,086 - Xcc-8004.237.1 0.77 +0.3 235,086 - Xcc-8004.237.1 0.77 -0.2 235,086 - Xcc-8004.237.1 0.77 +1.2 235,086 - Xcc-8004.237.1 0.77 -0.1 235,086 - Xcc-8004.237.1 0.77 +0.9 235,086 - Xcc-8004.237.1 0.77 +1.1 235,086 - Xcc-8004.237.1 0.77 +0.2 235,086 - Xcc-8004.237.1 0.77 +0.3 235,086 - Xcc-8004.237.1 0.77 -1.8 235,086 - Xcc-8004.237.1 0.77 +0.3 235,086 - Xcc-8004.237.1 0.77 -0.8 235,086 - Xcc-8004.237.1 0.77 +0.1 235,086 - Xcc-8004.237.1 0.77 +0.5 235,310 + -1.3 235,310 + +1.5 235,336 + +1.1 235,336 + -1.7 235,336 + -1.1 235,337 - -1.2 235,337 - -0.4 235,337 - -1.0 235,337 - -1.1 235,337 - -0.1 235,337 - -1.6 235,337 - -0.7 235,341 + +0.9 235,341 + -0.3 235,341 + -0.1 235,341 + -0.5 235,341 + +0.1 235,676 + Xcc-8004.238.1 0.15 +0.3 235,676 + Xcc-8004.238.1 0.15 -1.0 235,676 + Xcc-8004.238.1 0.15 +0.6 235,676 + Xcc-8004.238.1 0.15 -0.7 235,676 + Xcc-8004.238.1 0.15 +1.1 235,676 + Xcc-8004.238.1 0.15 +0.1 235,676 + Xcc-8004.238.1 0.15 -0.3 235,676 + Xcc-8004.238.1 0.15 -1.7 235,676 + Xcc-8004.238.1 0.15 -1.1 235,676 + Xcc-8004.238.1 0.15 +0.6 235,677 - Xcc-8004.238.1 0.15 +1.1 235,677 - Xcc-8004.238.1 0.15 -0.4 235,677 - Xcc-8004.238.1 0.15 +0.7 235,677 - Xcc-8004.238.1 0.15 +0.2 235,677 - Xcc-8004.238.1 0.15 -0.4 235,677 - Xcc-8004.238.1 0.15 +0.6 235,776 + Xcc-8004.238.1 0.20 +1.3 235,777 - Xcc-8004.238.1 0.20 -0.6 235,777 - Xcc-8004.238.1 0.20 -1.2 235,777 - Xcc-8004.238.1 0.20 +1.4 235,777 - Xcc-8004.238.1 0.20 -0.1 235,901 + Xcc-8004.238.1 0.26 -1.3 235,902 - Xcc-8004.238.1 0.26 +0.5 235,902 - Xcc-8004.238.1 0.26 +0.4 235,902 - Xcc-8004.238.1 0.26 +0.7 235,902 - Xcc-8004.238.1 0.26 -0.5 235,902 - Xcc-8004.238.1 0.26 +0.1 235,902 - Xcc-8004.238.1 0.26 -0.8 235,902 - Xcc-8004.238.1 0.26 +0.4
Or see this region's nucleotide sequence