Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.2357.1

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.2356.1 and Xcc-8004.2357.1 overlap by 8 nucleotidesXcc-8004.2357.1 and Xcc-8004.2358.1 overlap by 62 nucleotides Xcc-8004.2356.1: Xcc-8004.2356.1 - Ribosomal large subunit pseudouridine synthase B (EC 4.2.1.70), at 2,299,205 to 2,300,833 Xcc-8004.2356.1 Xcc-8004.2357.1: Xcc-8004.2357.1 - Segregation and condensation protein B, at 2,300,826 to 2,302,031 Xcc-8004.2357.1 Xcc-8004.2358.1: Xcc-8004.2358.1 - Segregation and condensation protein A, at 2,301,970 to 2,302,875 Xcc-8004.2358.1 Position (kb) 2300 2301 2302 2303Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2299.911 kb on + strand, within Xcc-8004.2356.1at 2299.912 kb on - strand, within Xcc-8004.2356.1at 2300.368 kb on - strand, within Xcc-8004.2356.1at 2301.330 kb on - strand, within Xcc-8004.2357.1at 2301.330 kb on - strand, within Xcc-8004.2357.1at 2301.330 kb on - strand, within Xcc-8004.2357.1at 2301.488 kb on - strand, within Xcc-8004.2357.1at 2301.488 kb on - strand, within Xcc-8004.2357.1at 2301.691 kb on + strand, within Xcc-8004.2357.1at 2301.692 kb on - strand, within Xcc-8004.2357.1at 2301.692 kb on - strand, within Xcc-8004.2357.1at 2301.692 kb on - strand, within Xcc-8004.2357.1at 2302.035 kb on + strandat 2302.036 kb on - strandat 2302.036 kb on - strandat 2302.036 kb on - strandat 2302.062 kb on - strand, within Xcc-8004.2358.1at 2302.062 kb on - strand, within Xcc-8004.2358.1at 2302.062 kb on - strand, within Xcc-8004.2358.1at 2302.062 kb on - strand, within Xcc-8004.2358.1at 2302.062 kb on - strand, within Xcc-8004.2358.1at 2302.191 kb on - strand, within Xcc-8004.2358.1at 2302.191 kb on - strand, within Xcc-8004.2358.1at 2302.305 kb on - strand, within Xcc-8004.2358.1at 2302.305 kb on - strand, within Xcc-8004.2358.1at 2302.305 kb on - strand, within Xcc-8004.2358.1at 2302.305 kb on - strand, within Xcc-8004.2358.1at 2302.452 kb on - strand, within Xcc-8004.2358.1at 2302.452 kb on - strand, within Xcc-8004.2358.1at 2302.452 kb on - strand, within Xcc-8004.2358.1at 2302.452 kb on - strand, within Xcc-8004.2358.1at 2302.572 kb on - strand, within Xcc-8004.2358.1at 2302.572 kb on - strand, within Xcc-8004.2358.1at 2302.572 kb on - strand, within Xcc-8004.2358.1at 2302.617 kb on - strand, within Xcc-8004.2358.1at 2302.617 kb on - strand, within Xcc-8004.2358.1at 2302.617 kb on - strand, within Xcc-8004.2358.1at 2302.617 kb on - strand, within Xcc-8004.2358.1at 2302.617 kb on - strand, within Xcc-8004.2358.1at 2302.617 kb on - strand, within Xcc-8004.2358.1at 2302.617 kb on - strand, within Xcc-8004.2358.1at 2302.625 kb on + strand, within Xcc-8004.2358.1at 2302.626 kb on - strand, within Xcc-8004.2358.1at 2302.626 kb on - strand, within Xcc-8004.2358.1at 2302.755 kb on - strand, within Xcc-8004.2358.1at 2302.755 kb on - strand, within Xcc-8004.2358.1at 2302.755 kb on - strand, within Xcc-8004.2358.1at 2302.755 kb on - strand, within Xcc-8004.2358.1at 2302.755 kb on - strand, within Xcc-8004.2358.1at 2302.755 kb on - strand, within Xcc-8004.2358.1at 2302.755 kb on - strand, within Xcc-8004.2358.1at 2302.755 kb on - strand, within Xcc-8004.2358.1at 2302.755 kb on - strand, within Xcc-8004.2358.1at 2302.755 kb on - strand, within Xcc-8004.2358.1at 2302.755 kb on - strand, within Xcc-8004.2358.1at 2302.755 kb on - strand, within Xcc-8004.2358.1at 2302.755 kb on - strand, within Xcc-8004.2358.1at 2302.755 kb on - strand, within Xcc-8004.2358.1at 2302.755 kb on - strand, within Xcc-8004.2358.1at 2302.755 kb on - strand, within Xcc-8004.2358.1at 2302.755 kb on - strand, within Xcc-8004.2358.1at 2302.755 kb on - strand, within Xcc-8004.2358.1at 2302.755 kb on - strand, within Xcc-8004.2358.1at 2302.755 kb on - strand, within Xcc-8004.2358.1at 2302.946 kb on + strandat 2302.947 kb on - strandat 2302.947 kb on - strandat 2302.947 kb on - strandat 2302.947 kb on - strandat 2302.947 kb on - strandat 2302.996 kb on - strandat 2302.996 kb on - strandat 2302.996 kb on - strandat 2302.996 kb on - strandat 2302.996 kb on - strandat 2302.996 kb on - strandat 2302.996 kb on - strandat 2302.996 kb on - strandat 2302.996 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X
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2,299,911 + Xcc-8004.2356.1 0.43 -1.4
2,299,912 - Xcc-8004.2356.1 0.43 -0.6
2,300,368 - Xcc-8004.2356.1 0.71 -0.0
2,301,330 - Xcc-8004.2357.1 0.42 -1.1
2,301,330 - Xcc-8004.2357.1 0.42 -0.4
2,301,330 - Xcc-8004.2357.1 0.42 -1.0
2,301,488 - Xcc-8004.2357.1 0.55 -0.2
2,301,488 - Xcc-8004.2357.1 0.55 -1.2
2,301,691 + Xcc-8004.2357.1 0.72 +3.3
2,301,692 - Xcc-8004.2357.1 0.72 -0.6
2,301,692 - Xcc-8004.2357.1 0.72 -0.2
2,301,692 - Xcc-8004.2357.1 0.72 -0.0
2,302,035 + +2.2
2,302,036 - -0.5
2,302,036 - +0.8
2,302,036 - +0.0
2,302,062 - Xcc-8004.2358.1 0.10 -1.9
2,302,062 - Xcc-8004.2358.1 0.10 +0.2
2,302,062 - Xcc-8004.2358.1 0.10 +0.7
2,302,062 - Xcc-8004.2358.1 0.10 -1.5
2,302,062 - Xcc-8004.2358.1 0.10 +0.2
2,302,191 - Xcc-8004.2358.1 0.24 -1.3
2,302,191 - Xcc-8004.2358.1 0.24 -0.0
2,302,305 - Xcc-8004.2358.1 0.37 -0.6
2,302,305 - Xcc-8004.2358.1 0.37 +0.6
2,302,305 - Xcc-8004.2358.1 0.37 -1.2
2,302,305 - Xcc-8004.2358.1 0.37 -0.3
2,302,452 - Xcc-8004.2358.1 0.53 -1.1
2,302,452 - Xcc-8004.2358.1 0.53 -1.9
2,302,452 - Xcc-8004.2358.1 0.53 -0.4
2,302,452 - Xcc-8004.2358.1 0.53 +0.2
2,302,572 - Xcc-8004.2358.1 0.66 -0.6
2,302,572 - Xcc-8004.2358.1 0.66 -0.4
2,302,572 - Xcc-8004.2358.1 0.66 -0.0
2,302,617 - Xcc-8004.2358.1 0.71 +0.2
2,302,617 - Xcc-8004.2358.1 0.71 -1.6
2,302,617 - Xcc-8004.2358.1 0.71 -0.8
2,302,617 - Xcc-8004.2358.1 0.71 +0.2
2,302,617 - Xcc-8004.2358.1 0.71 -0.8
2,302,617 - Xcc-8004.2358.1 0.71 -0.1
2,302,617 - Xcc-8004.2358.1 0.71 +1.6
2,302,625 + Xcc-8004.2358.1 0.72 -0.8
2,302,626 - Xcc-8004.2358.1 0.72 +0.6
2,302,626 - Xcc-8004.2358.1 0.72 -0.4
2,302,755 - Xcc-8004.2358.1 0.87 +0.6
2,302,755 - Xcc-8004.2358.1 0.87 -0.4
2,302,755 - Xcc-8004.2358.1 0.87 -0.6
2,302,755 - Xcc-8004.2358.1 0.87 -1.9
2,302,755 - Xcc-8004.2358.1 0.87 -0.4
2,302,755 - Xcc-8004.2358.1 0.87 -0.0
2,302,755 - Xcc-8004.2358.1 0.87 +0.1
2,302,755 - Xcc-8004.2358.1 0.87 -1.6
2,302,755 - Xcc-8004.2358.1 0.87 +1.3
2,302,755 - Xcc-8004.2358.1 0.87 +1.6
2,302,755 - Xcc-8004.2358.1 0.87 -0.9
2,302,755 - Xcc-8004.2358.1 0.87 -0.2
2,302,755 - Xcc-8004.2358.1 0.87 +0.7
2,302,755 - Xcc-8004.2358.1 0.87 -0.0
2,302,755 - Xcc-8004.2358.1 0.87 -0.0
2,302,755 - Xcc-8004.2358.1 0.87 +0.1
2,302,755 - Xcc-8004.2358.1 0.87 +0.9
2,302,755 - Xcc-8004.2358.1 0.87 -0.1
2,302,755 - Xcc-8004.2358.1 0.87 -0.1
2,302,755 - Xcc-8004.2358.1 0.87 -1.1
2,302,946 + +1.0
2,302,947 - -1.3
2,302,947 - +0.5
2,302,947 - +0.5
2,302,947 - -0.6
2,302,947 - -1.8
2,302,996 - +0.6
2,302,996 - -0.0
2,302,996 - +0.7
2,302,996 - -1.1
2,302,996 - -1.3
2,302,996 - +0.4
2,302,996 - -0.6
2,302,996 - +0.2
2,302,996 - -0.8

Or see this region's nucleotide sequence