Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.2335.1

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.2334.1 and Xcc-8004.2335.1 overlap by 4 nucleotidesXcc-8004.2335.1 and Xcc-8004.2336.1 are separated by 46 nucleotidesXcc-8004.2336.1 and Xcc-8004.2337.1 are separated by 21 nucleotides Xcc-8004.2334.1: Xcc-8004.2334.1 - Transport ATP-binding protein CydD, at 2,281,566 to 2,283,389 Xcc-8004.2334.1 Xcc-8004.2335.1: Xcc-8004.2335.1 - Transport ATP-binding protein CydC, at 2,283,386 to 2,285,062 Xcc-8004.2335.1 Xcc-8004.2336.1: Xcc-8004.2336.1 - putative membrane protein, at 2,285,109 to 2,285,723 Xcc-8004.2336.1 Xcc-8004.2337.1: Xcc-8004.2337.1 - Homoserine O-acetyltransferase (EC 2.3.1.31), at 2,285,745 to 2,286,836 Xcc-8004.2337.1 Position (kb) 2283 2284 2285 2286Strain fitness (log2 ratio) -2 -1 0 1 2at 2282.499 kb on + strand, within Xcc-8004.2334.1at 2282.499 kb on + strand, within Xcc-8004.2334.1at 2282.499 kb on + strand, within Xcc-8004.2334.1at 2282.514 kb on + strand, within Xcc-8004.2334.1at 2282.514 kb on + strand, within Xcc-8004.2334.1at 2282.515 kb on - strand, within Xcc-8004.2334.1at 2282.515 kb on - strand, within Xcc-8004.2334.1at 2282.622 kb on + strand, within Xcc-8004.2334.1at 2282.623 kb on - strand, within Xcc-8004.2334.1at 2282.623 kb on - strand, within Xcc-8004.2334.1at 2282.623 kb on - strand, within Xcc-8004.2334.1at 2282.623 kb on - strand, within Xcc-8004.2334.1at 2282.968 kb on - strand, within Xcc-8004.2334.1at 2282.968 kb on - strand, within Xcc-8004.2334.1at 2282.968 kb on - strand, within Xcc-8004.2334.1at 2282.986 kb on - strand, within Xcc-8004.2334.1at 2283.355 kb on + strandat 2283.356 kb on - strandat 2283.356 kb on - strandat 2283.424 kb on + strandat 2283.425 kb on - strandat 2283.626 kb on + strand, within Xcc-8004.2335.1at 2283.825 kb on + strand, within Xcc-8004.2335.1at 2283.825 kb on + strand, within Xcc-8004.2335.1at 2283.826 kb on - strand, within Xcc-8004.2335.1at 2283.869 kb on + strand, within Xcc-8004.2335.1at 2283.869 kb on + strand, within Xcc-8004.2335.1at 2283.869 kb on + strand, within Xcc-8004.2335.1at 2283.870 kb on - strand, within Xcc-8004.2335.1at 2283.870 kb on - strand, within Xcc-8004.2335.1at 2283.870 kb on - strand, within Xcc-8004.2335.1at 2283.870 kb on - strand, within Xcc-8004.2335.1at 2283.870 kb on - strand, within Xcc-8004.2335.1at 2283.870 kb on - strand, within Xcc-8004.2335.1at 2284.589 kb on + strand, within Xcc-8004.2335.1at 2284.589 kb on + strand, within Xcc-8004.2335.1at 2284.589 kb on + strand, within Xcc-8004.2335.1at 2284.590 kb on - strand, within Xcc-8004.2335.1at 2284.590 kb on - strand, within Xcc-8004.2335.1at 2284.732 kb on - strand, within Xcc-8004.2335.1at 2284.732 kb on - strand, within Xcc-8004.2335.1at 2285.231 kb on + strand, within Xcc-8004.2336.1at 2285.231 kb on + strand, within Xcc-8004.2336.1at 2285.232 kb on - strand, within Xcc-8004.2336.1at 2285.232 kb on - strand, within Xcc-8004.2336.1at 2285.232 kb on - strand, within Xcc-8004.2336.1at 2285.232 kb on - strand, within Xcc-8004.2336.1at 2285.232 kb on - strand, within Xcc-8004.2336.1at 2285.353 kb on + strand, within Xcc-8004.2336.1at 2285.353 kb on + strand, within Xcc-8004.2336.1at 2285.354 kb on - strand, within Xcc-8004.2336.1at 2285.354 kb on - strand, within Xcc-8004.2336.1at 2285.386 kb on + strand, within Xcc-8004.2336.1at 2285.386 kb on + strand, within Xcc-8004.2336.1at 2285.386 kb on + strand, within Xcc-8004.2336.1at 2285.386 kb on + strand, within Xcc-8004.2336.1at 2285.386 kb on + strand, within Xcc-8004.2336.1at 2285.386 kb on + strand, within Xcc-8004.2336.1at 2285.387 kb on - strand, within Xcc-8004.2336.1at 2285.387 kb on - strand, within Xcc-8004.2336.1at 2285.387 kb on - strand, within Xcc-8004.2336.1at 2285.387 kb on - strand, within Xcc-8004.2336.1at 2285.387 kb on - strand, within Xcc-8004.2336.1at 2285.387 kb on - strand, within Xcc-8004.2336.1at 2285.387 kb on - strand, within Xcc-8004.2336.1at 2285.387 kb on - strand, within Xcc-8004.2336.1at 2285.387 kb on - strand, within Xcc-8004.2336.1at 2285.387 kb on - strand, within Xcc-8004.2336.1at 2285.575 kb on + strand, within Xcc-8004.2336.1at 2285.575 kb on + strand, within Xcc-8004.2336.1at 2285.575 kb on + strand, within Xcc-8004.2336.1at 2285.575 kb on + strand, within Xcc-8004.2336.1at 2285.576 kb on - strand, within Xcc-8004.2336.1at 2285.576 kb on - strand, within Xcc-8004.2336.1at 2285.717 kb on - strandat 2286.016 kb on + strand, within Xcc-8004.2337.1at 2286.051 kb on + strand, within Xcc-8004.2337.1at 2286.052 kb on - strand, within Xcc-8004.2337.1at 2286.052 kb on - strand, within Xcc-8004.2337.1at 2286.055 kb on + strand, within Xcc-8004.2337.1at 2286.055 kb on + strand, within Xcc-8004.2337.1at 2286.055 kb on + strand, within Xcc-8004.2337.1at 2286.055 kb on + strand, within Xcc-8004.2337.1at 2286.055 kb on + strand, within Xcc-8004.2337.1at 2286.056 kb on - strand, within Xcc-8004.2337.1at 2286.056 kb on - strand, within Xcc-8004.2337.1at 2286.061 kb on + strand, within Xcc-8004.2337.1at 2286.061 kb on + strand, within Xcc-8004.2337.1at 2286.061 kb on + strand, within Xcc-8004.2337.1at 2286.061 kb on + strand, within Xcc-8004.2337.1at 2286.061 kb on + strand, within Xcc-8004.2337.1at 2286.061 kb on + strand, within Xcc-8004.2337.1at 2286.061 kb on + strand, within Xcc-8004.2337.1at 2286.062 kb on - strand, within Xcc-8004.2337.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X
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2,282,499 + Xcc-8004.2334.1 0.51 +0.8
2,282,499 + Xcc-8004.2334.1 0.51 -0.6
2,282,499 + Xcc-8004.2334.1 0.51 +0.6
2,282,514 + Xcc-8004.2334.1 0.52 +0.9
2,282,514 + Xcc-8004.2334.1 0.52 +2.0
2,282,515 - Xcc-8004.2334.1 0.52 -0.3
2,282,515 - Xcc-8004.2334.1 0.52 -1.2
2,282,622 + Xcc-8004.2334.1 0.58 -0.2
2,282,623 - Xcc-8004.2334.1 0.58 +0.1
2,282,623 - Xcc-8004.2334.1 0.58 +1.0
2,282,623 - Xcc-8004.2334.1 0.58 -1.0
2,282,623 - Xcc-8004.2334.1 0.58 +1.6
2,282,968 - Xcc-8004.2334.1 0.77 -0.4
2,282,968 - Xcc-8004.2334.1 0.77 -0.4
2,282,968 - Xcc-8004.2334.1 0.77 -1.0
2,282,986 - Xcc-8004.2334.1 0.78 -1.1
2,283,355 + -1.4
2,283,356 - -0.3
2,283,356 - +1.0
2,283,424 + -1.2
2,283,425 - +2.3
2,283,626 + Xcc-8004.2335.1 0.14 -1.0
2,283,825 + Xcc-8004.2335.1 0.26 -0.7
2,283,825 + Xcc-8004.2335.1 0.26 -1.8
2,283,826 - Xcc-8004.2335.1 0.26 +0.2
2,283,869 + Xcc-8004.2335.1 0.29 +0.6
2,283,869 + Xcc-8004.2335.1 0.29 -0.6
2,283,869 + Xcc-8004.2335.1 0.29 +0.8
2,283,870 - Xcc-8004.2335.1 0.29 -1.1
2,283,870 - Xcc-8004.2335.1 0.29 +0.2
2,283,870 - Xcc-8004.2335.1 0.29 +0.4
2,283,870 - Xcc-8004.2335.1 0.29 +0.8
2,283,870 - Xcc-8004.2335.1 0.29 -2.1
2,283,870 - Xcc-8004.2335.1 0.29 -1.4
2,284,589 + Xcc-8004.2335.1 0.72 -0.1
2,284,589 + Xcc-8004.2335.1 0.72 +2.0
2,284,589 + Xcc-8004.2335.1 0.72 +0.7
2,284,590 - Xcc-8004.2335.1 0.72 -0.4
2,284,590 - Xcc-8004.2335.1 0.72 -0.7
2,284,732 - Xcc-8004.2335.1 0.80 -0.9
2,284,732 - Xcc-8004.2335.1 0.80 -0.4
2,285,231 + Xcc-8004.2336.1 0.20 -0.9
2,285,231 + Xcc-8004.2336.1 0.20 +0.4
2,285,232 - Xcc-8004.2336.1 0.20 -0.1
2,285,232 - Xcc-8004.2336.1 0.20 -1.4
2,285,232 - Xcc-8004.2336.1 0.20 -1.1
2,285,232 - Xcc-8004.2336.1 0.20 +0.0
2,285,232 - Xcc-8004.2336.1 0.20 +1.5
2,285,353 + Xcc-8004.2336.1 0.40 +0.0
2,285,353 + Xcc-8004.2336.1 0.40 -1.0
2,285,354 - Xcc-8004.2336.1 0.40 -0.4
2,285,354 - Xcc-8004.2336.1 0.40 -0.1
2,285,386 + Xcc-8004.2336.1 0.45 +0.5
2,285,386 + Xcc-8004.2336.1 0.45 -1.3
2,285,386 + Xcc-8004.2336.1 0.45 -1.2
2,285,386 + Xcc-8004.2336.1 0.45 -0.5
2,285,386 + Xcc-8004.2336.1 0.45 +0.2
2,285,386 + Xcc-8004.2336.1 0.45 -1.8
2,285,387 - Xcc-8004.2336.1 0.45 -1.0
2,285,387 - Xcc-8004.2336.1 0.45 -1.5
2,285,387 - Xcc-8004.2336.1 0.45 -1.2
2,285,387 - Xcc-8004.2336.1 0.45 -1.1
2,285,387 - Xcc-8004.2336.1 0.45 +1.5
2,285,387 - Xcc-8004.2336.1 0.45 +0.5
2,285,387 - Xcc-8004.2336.1 0.45 +0.6
2,285,387 - Xcc-8004.2336.1 0.45 -1.3
2,285,387 - Xcc-8004.2336.1 0.45 +1.3
2,285,387 - Xcc-8004.2336.1 0.45 -0.8
2,285,575 + Xcc-8004.2336.1 0.76 +0.6
2,285,575 + Xcc-8004.2336.1 0.76 +1.2
2,285,575 + Xcc-8004.2336.1 0.76 -0.3
2,285,575 + Xcc-8004.2336.1 0.76 +0.7
2,285,576 - Xcc-8004.2336.1 0.76 -0.5
2,285,576 - Xcc-8004.2336.1 0.76 +1.1
2,285,717 - +0.7
2,286,016 + Xcc-8004.2337.1 0.25 -0.3
2,286,051 + Xcc-8004.2337.1 0.28 +0.1
2,286,052 - Xcc-8004.2337.1 0.28 -2.2
2,286,052 - Xcc-8004.2337.1 0.28 -2.4
2,286,055 + Xcc-8004.2337.1 0.28 -1.1
2,286,055 + Xcc-8004.2337.1 0.28 -2.2
2,286,055 + Xcc-8004.2337.1 0.28 -1.1
2,286,055 + Xcc-8004.2337.1 0.28 -0.3
2,286,055 + Xcc-8004.2337.1 0.28 -0.1
2,286,056 - Xcc-8004.2337.1 0.28 -1.8
2,286,056 - Xcc-8004.2337.1 0.28 -1.9
2,286,061 + Xcc-8004.2337.1 0.29 -0.8
2,286,061 + Xcc-8004.2337.1 0.29 -0.9
2,286,061 + Xcc-8004.2337.1 0.29 -2.5
2,286,061 + Xcc-8004.2337.1 0.29 -1.8
2,286,061 + Xcc-8004.2337.1 0.29 -0.2
2,286,061 + Xcc-8004.2337.1 0.29 -0.8
2,286,061 + Xcc-8004.2337.1 0.29 -1.2
2,286,062 - Xcc-8004.2337.1 0.29 -0.4

Or see this region's nucleotide sequence