Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.2324.1

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.2323.1 and Xcc-8004.2324.1 overlap by 4 nucleotidesXcc-8004.2324.1 and Xcc-8004.2325.1 overlap by 1 nucleotidesXcc-8004.2325.1 and Xcc-8004.2326.1 are separated by 58 nucleotides Xcc-8004.2323.1: Xcc-8004.2323.1 - Argininosuccinate lyase (EC 4.3.2.1), at 2,270,229 to 2,271,524 Xcc-8004.2323.1 Xcc-8004.2324.1: Xcc-8004.2324.1 - Mannose-6-phosphate isomerase (EC 5.3.1.8), at 2,271,521 to 2,271,928 Xcc-8004.2324.1 Xcc-8004.2325.1: Xcc-8004.2325.1 - FIG01209702: hypothetical protein, at 2,271,928 to 2,272,188 Xcc-8004.2325.1 Xcc-8004.2326.1: Xcc-8004.2326.1 - Glutamate 5-kinase (EC 2.7.2.11) / RNA-binding C-terminal domain PUA, at 2,272,247 to 2,273,401 Xcc-8004.2326.1 Position (kb) 2271 2272Strain fitness (log2 ratio) -2 -1 0 1 2at 2270.590 kb on + strand, within Xcc-8004.2323.1at 2270.590 kb on + strand, within Xcc-8004.2323.1at 2270.681 kb on - strand, within Xcc-8004.2323.1at 2270.695 kb on - strand, within Xcc-8004.2323.1at 2270.803 kb on + strand, within Xcc-8004.2323.1at 2270.804 kb on - strand, within Xcc-8004.2323.1at 2270.913 kb on + strand, within Xcc-8004.2323.1at 2270.913 kb on + strand, within Xcc-8004.2323.1at 2270.913 kb on + strand, within Xcc-8004.2323.1at 2270.913 kb on + strand, within Xcc-8004.2323.1at 2270.913 kb on + strand, within Xcc-8004.2323.1at 2270.913 kb on + strand, within Xcc-8004.2323.1at 2270.914 kb on - strand, within Xcc-8004.2323.1at 2270.914 kb on - strand, within Xcc-8004.2323.1at 2270.914 kb on - strand, within Xcc-8004.2323.1at 2270.914 kb on - strand, within Xcc-8004.2323.1at 2271.054 kb on + strand, within Xcc-8004.2323.1at 2271.327 kb on + strand, within Xcc-8004.2323.1at 2271.328 kb on - strand, within Xcc-8004.2323.1at 2271.328 kb on - strand, within Xcc-8004.2323.1at 2271.328 kb on - strand, within Xcc-8004.2323.1at 2271.328 kb on - strand, within Xcc-8004.2323.1at 2271.328 kb on - strand, within Xcc-8004.2323.1at 2271.384 kb on + strand, within Xcc-8004.2323.1at 2271.384 kb on + strand, within Xcc-8004.2323.1at 2271.385 kb on - strand, within Xcc-8004.2323.1at 2271.385 kb on - strand, within Xcc-8004.2323.1at 2271.385 kb on - strand, within Xcc-8004.2323.1at 2271.557 kb on + strandat 2271.558 kb on - strandat 2271.558 kb on - strandat 2271.664 kb on + strand, within Xcc-8004.2324.1at 2271.665 kb on - strand, within Xcc-8004.2324.1at 2271.686 kb on + strand, within Xcc-8004.2324.1at 2271.686 kb on + strand, within Xcc-8004.2324.1at 2271.686 kb on + strand, within Xcc-8004.2324.1at 2271.686 kb on + strand, within Xcc-8004.2324.1at 2271.687 kb on - strand, within Xcc-8004.2324.1at 2271.854 kb on - strand, within Xcc-8004.2324.1at 2271.854 kb on - strand, within Xcc-8004.2324.1at 2271.940 kb on + strandat 2272.075 kb on + strand, within Xcc-8004.2325.1at 2272.075 kb on + strand, within Xcc-8004.2325.1at 2272.075 kb on + strand, within Xcc-8004.2325.1at 2272.075 kb on + strand, within Xcc-8004.2325.1at 2272.076 kb on - strand, within Xcc-8004.2325.1at 2272.076 kb on - strand, within Xcc-8004.2325.1at 2272.079 kb on + strand, within Xcc-8004.2325.1at 2272.079 kb on + strand, within Xcc-8004.2325.1at 2272.079 kb on + strand, within Xcc-8004.2325.1at 2272.079 kb on + strand, within Xcc-8004.2325.1at 2272.079 kb on + strand, within Xcc-8004.2325.1at 2272.079 kb on + strand, within Xcc-8004.2325.1at 2272.079 kb on + strand, within Xcc-8004.2325.1at 2272.080 kb on - strand, within Xcc-8004.2325.1at 2272.080 kb on - strand, within Xcc-8004.2325.1at 2272.080 kb on - strand, within Xcc-8004.2325.1at 2272.080 kb on - strand, within Xcc-8004.2325.1at 2272.080 kb on - strand, within Xcc-8004.2325.1at 2272.080 kb on - strand, within Xcc-8004.2325.1at 2272.168 kb on + strandat 2272.168 kb on + strandat 2272.168 kb on + strandat 2272.168 kb on + strandat 2272.168 kb on + strandat 2272.169 kb on - strandat 2272.626 kb on - strand, within Xcc-8004.2326.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X
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2,270,590 + Xcc-8004.2323.1 0.28 +0.9
2,270,590 + Xcc-8004.2323.1 0.28 +0.1
2,270,681 - Xcc-8004.2323.1 0.35 +0.1
2,270,695 - Xcc-8004.2323.1 0.36 +0.1
2,270,803 + Xcc-8004.2323.1 0.44 +0.8
2,270,804 - Xcc-8004.2323.1 0.44 +0.9
2,270,913 + Xcc-8004.2323.1 0.53 -2.0
2,270,913 + Xcc-8004.2323.1 0.53 +0.7
2,270,913 + Xcc-8004.2323.1 0.53 +0.5
2,270,913 + Xcc-8004.2323.1 0.53 -2.2
2,270,913 + Xcc-8004.2323.1 0.53 -1.5
2,270,913 + Xcc-8004.2323.1 0.53 -2.6
2,270,914 - Xcc-8004.2323.1 0.53 +0.7
2,270,914 - Xcc-8004.2323.1 0.53 +0.6
2,270,914 - Xcc-8004.2323.1 0.53 -0.3
2,270,914 - Xcc-8004.2323.1 0.53 -0.2
2,271,054 + Xcc-8004.2323.1 0.64 +0.5
2,271,327 + Xcc-8004.2323.1 0.85 +0.6
2,271,328 - Xcc-8004.2323.1 0.85 -0.6
2,271,328 - Xcc-8004.2323.1 0.85 -0.3
2,271,328 - Xcc-8004.2323.1 0.85 +0.0
2,271,328 - Xcc-8004.2323.1 0.85 -2.4
2,271,328 - Xcc-8004.2323.1 0.85 -1.1
2,271,384 + Xcc-8004.2323.1 0.89 +0.8
2,271,384 + Xcc-8004.2323.1 0.89 +0.6
2,271,385 - Xcc-8004.2323.1 0.89 +0.4
2,271,385 - Xcc-8004.2323.1 0.89 +0.2
2,271,385 - Xcc-8004.2323.1 0.89 -0.4
2,271,557 + -1.0
2,271,558 - +1.5
2,271,558 - +2.0
2,271,664 + Xcc-8004.2324.1 0.35 -0.7
2,271,665 - Xcc-8004.2324.1 0.35 -2.0
2,271,686 + Xcc-8004.2324.1 0.40 -0.2
2,271,686 + Xcc-8004.2324.1 0.40 -1.4
2,271,686 + Xcc-8004.2324.1 0.40 -2.1
2,271,686 + Xcc-8004.2324.1 0.40 +0.9
2,271,687 - Xcc-8004.2324.1 0.41 -0.2
2,271,854 - Xcc-8004.2324.1 0.82 -0.3
2,271,854 - Xcc-8004.2324.1 0.82 -1.2
2,271,940 + -0.2
2,272,075 + Xcc-8004.2325.1 0.56 -0.4
2,272,075 + Xcc-8004.2325.1 0.56 +0.2
2,272,075 + Xcc-8004.2325.1 0.56 +0.7
2,272,075 + Xcc-8004.2325.1 0.56 -0.5
2,272,076 - Xcc-8004.2325.1 0.57 -0.0
2,272,076 - Xcc-8004.2325.1 0.57 -2.3
2,272,079 + Xcc-8004.2325.1 0.58 +0.2
2,272,079 + Xcc-8004.2325.1 0.58 -1.7
2,272,079 + Xcc-8004.2325.1 0.58 +0.2
2,272,079 + Xcc-8004.2325.1 0.58 -1.1
2,272,079 + Xcc-8004.2325.1 0.58 -0.1
2,272,079 + Xcc-8004.2325.1 0.58 +0.5
2,272,079 + Xcc-8004.2325.1 0.58 +0.9
2,272,080 - Xcc-8004.2325.1 0.58 -2.6
2,272,080 - Xcc-8004.2325.1 0.58 -1.0
2,272,080 - Xcc-8004.2325.1 0.58 -0.0
2,272,080 - Xcc-8004.2325.1 0.58 -1.0
2,272,080 - Xcc-8004.2325.1 0.58 -0.4
2,272,080 - Xcc-8004.2325.1 0.58 -1.5
2,272,168 + +0.4
2,272,168 + +0.7
2,272,168 + -0.8
2,272,168 + -1.3
2,272,168 + -0.2
2,272,169 - +1.1
2,272,626 - Xcc-8004.2326.1 0.33 -0.0

Or see this region's nucleotide sequence