Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.2317.1

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.2316.1 and Xcc-8004.2317.1 overlap by 4 nucleotidesXcc-8004.2317.1 and Xcc-8004.2318.1 are separated by 30 nucleotides Xcc-8004.2316.1: Xcc-8004.2316.1 - N-acetylornithine carbamoyltransferase (EC 2.1.3.9), at 2,263,144 to 2,264,163 Xcc-8004.2316.1 Xcc-8004.2317.1: Xcc-8004.2317.1 - OsmC/Ohr family protein, at 2,264,160 to 2,264,630 Xcc-8004.2317.1 Xcc-8004.2318.1: Xcc-8004.2318.1 - Argininosuccinate synthase (EC 6.3.4.5), at 2,264,661 to 2,265,854 Xcc-8004.2318.1 Position (kb) 2264 2265Strain fitness (log2 ratio) -3 -2 -1 0 1at 2263.456 kb on + strand, within Xcc-8004.2316.1at 2263.456 kb on + strand, within Xcc-8004.2316.1at 2263.456 kb on + strand, within Xcc-8004.2316.1at 2263.546 kb on + strand, within Xcc-8004.2316.1at 2263.547 kb on - strand, within Xcc-8004.2316.1at 2263.547 kb on - strand, within Xcc-8004.2316.1at 2263.547 kb on - strand, within Xcc-8004.2316.1at 2263.660 kb on + strand, within Xcc-8004.2316.1at 2263.660 kb on + strand, within Xcc-8004.2316.1at 2263.661 kb on - strand, within Xcc-8004.2316.1at 2263.661 kb on - strand, within Xcc-8004.2316.1at 2263.661 kb on - strand, within Xcc-8004.2316.1at 2263.661 kb on - strand, within Xcc-8004.2316.1at 2263.661 kb on - strand, within Xcc-8004.2316.1at 2263.661 kb on - strand, within Xcc-8004.2316.1at 2263.661 kb on - strand, within Xcc-8004.2316.1at 2263.678 kb on + strand, within Xcc-8004.2316.1at 2263.678 kb on + strand, within Xcc-8004.2316.1at 2263.678 kb on + strand, within Xcc-8004.2316.1at 2263.678 kb on + strand, within Xcc-8004.2316.1at 2263.678 kb on + strand, within Xcc-8004.2316.1at 2263.679 kb on - strand, within Xcc-8004.2316.1at 2263.679 kb on - strand, within Xcc-8004.2316.1at 2263.679 kb on - strand, within Xcc-8004.2316.1at 2263.679 kb on - strand, within Xcc-8004.2316.1at 2263.679 kb on - strand, within Xcc-8004.2316.1at 2263.679 kb on - strand, within Xcc-8004.2316.1at 2263.679 kb on - strand, within Xcc-8004.2316.1at 2263.679 kb on - strand, within Xcc-8004.2316.1at 2263.777 kb on + strand, within Xcc-8004.2316.1at 2263.777 kb on + strand, within Xcc-8004.2316.1at 2263.777 kb on + strand, within Xcc-8004.2316.1at 2263.778 kb on - strand, within Xcc-8004.2316.1at 2263.778 kb on - strand, within Xcc-8004.2316.1at 2263.778 kb on - strand, within Xcc-8004.2316.1at 2263.778 kb on - strand, within Xcc-8004.2316.1at 2263.795 kb on + strand, within Xcc-8004.2316.1at 2263.795 kb on + strand, within Xcc-8004.2316.1at 2263.795 kb on + strand, within Xcc-8004.2316.1at 2263.795 kb on + strand, within Xcc-8004.2316.1at 2263.796 kb on - strand, within Xcc-8004.2316.1at 2263.796 kb on - strand, within Xcc-8004.2316.1at 2263.796 kb on - strand, within Xcc-8004.2316.1at 2263.796 kb on - strand, within Xcc-8004.2316.1at 2263.870 kb on + strand, within Xcc-8004.2316.1at 2263.871 kb on - strand, within Xcc-8004.2316.1at 2263.871 kb on - strand, within Xcc-8004.2316.1at 2263.871 kb on - strand, within Xcc-8004.2316.1at 2263.892 kb on - strand, within Xcc-8004.2316.1at 2263.892 kb on - strand, within Xcc-8004.2316.1at 2263.892 kb on - strand, within Xcc-8004.2316.1at 2263.892 kb on - strand, within Xcc-8004.2316.1at 2263.892 kb on - strand, within Xcc-8004.2316.1at 2263.892 kb on - strand, within Xcc-8004.2316.1at 2263.960 kb on + strand, within Xcc-8004.2316.1at 2263.960 kb on + strand, within Xcc-8004.2316.1at 2263.961 kb on - strand, within Xcc-8004.2316.1at 2264.052 kb on + strand, within Xcc-8004.2316.1at 2264.181 kb on + strandat 2264.182 kb on - strandat 2264.233 kb on - strand, within Xcc-8004.2317.1at 2264.233 kb on - strand, within Xcc-8004.2317.1at 2264.241 kb on + strand, within Xcc-8004.2317.1at 2264.382 kb on + strand, within Xcc-8004.2317.1at 2264.383 kb on - strand, within Xcc-8004.2317.1at 2264.676 kb on - strandat 2264.922 kb on + strand, within Xcc-8004.2318.1at 2264.947 kb on - strand, within Xcc-8004.2318.1at 2265.072 kb on + strand, within Xcc-8004.2318.1at 2265.142 kb on - strand, within Xcc-8004.2318.1at 2265.186 kb on + strand, within Xcc-8004.2318.1at 2265.186 kb on + strand, within Xcc-8004.2318.1at 2265.186 kb on + strand, within Xcc-8004.2318.1at 2265.187 kb on - strand, within Xcc-8004.2318.1at 2265.187 kb on - strand, within Xcc-8004.2318.1at 2265.187 kb on - strand, within Xcc-8004.2318.1at 2265.187 kb on - strand, within Xcc-8004.2318.1at 2265.288 kb on - strand, within Xcc-8004.2318.1at 2265.598 kb on - strand, within Xcc-8004.2318.1at 2265.598 kb on - strand, within Xcc-8004.2318.1at 2265.609 kb on + strand, within Xcc-8004.2318.1at 2265.610 kb on - strand, within Xcc-8004.2318.1at 2265.610 kb on - strand, within Xcc-8004.2318.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X
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2,263,456 + Xcc-8004.2316.1 0.31 -2.6
2,263,456 + Xcc-8004.2316.1 0.31 -2.1
2,263,456 + Xcc-8004.2316.1 0.31 -0.5
2,263,546 + Xcc-8004.2316.1 0.39 +0.8
2,263,547 - Xcc-8004.2316.1 0.40 +0.5
2,263,547 - Xcc-8004.2316.1 0.40 -1.0
2,263,547 - Xcc-8004.2316.1 0.40 +0.7
2,263,660 + Xcc-8004.2316.1 0.51 +0.9
2,263,660 + Xcc-8004.2316.1 0.51 -0.8
2,263,661 - Xcc-8004.2316.1 0.51 +0.2
2,263,661 - Xcc-8004.2316.1 0.51 -1.1
2,263,661 - Xcc-8004.2316.1 0.51 +1.2
2,263,661 - Xcc-8004.2316.1 0.51 -0.3
2,263,661 - Xcc-8004.2316.1 0.51 -0.3
2,263,661 - Xcc-8004.2316.1 0.51 +0.5
2,263,661 - Xcc-8004.2316.1 0.51 +1.3
2,263,678 + Xcc-8004.2316.1 0.52 -0.5
2,263,678 + Xcc-8004.2316.1 0.52 -2.6
2,263,678 + Xcc-8004.2316.1 0.52 -0.4
2,263,678 + Xcc-8004.2316.1 0.52 +0.8
2,263,678 + Xcc-8004.2316.1 0.52 -0.4
2,263,679 - Xcc-8004.2316.1 0.52 -1.7
2,263,679 - Xcc-8004.2316.1 0.52 +1.3
2,263,679 - Xcc-8004.2316.1 0.52 +1.7
2,263,679 - Xcc-8004.2316.1 0.52 +0.5
2,263,679 - Xcc-8004.2316.1 0.52 +0.8
2,263,679 - Xcc-8004.2316.1 0.52 +0.8
2,263,679 - Xcc-8004.2316.1 0.52 +0.5
2,263,679 - Xcc-8004.2316.1 0.52 +1.0
2,263,777 + Xcc-8004.2316.1 0.62 +0.8
2,263,777 + Xcc-8004.2316.1 0.62 -0.8
2,263,777 + Xcc-8004.2316.1 0.62 -0.4
2,263,778 - Xcc-8004.2316.1 0.62 +0.0
2,263,778 - Xcc-8004.2316.1 0.62 -0.2
2,263,778 - Xcc-8004.2316.1 0.62 -0.2
2,263,778 - Xcc-8004.2316.1 0.62 +1.1
2,263,795 + Xcc-8004.2316.1 0.64 +0.5
2,263,795 + Xcc-8004.2316.1 0.64 +0.5
2,263,795 + Xcc-8004.2316.1 0.64 -1.0
2,263,795 + Xcc-8004.2316.1 0.64 +0.8
2,263,796 - Xcc-8004.2316.1 0.64 +0.2
2,263,796 - Xcc-8004.2316.1 0.64 +0.2
2,263,796 - Xcc-8004.2316.1 0.64 -0.4
2,263,796 - Xcc-8004.2316.1 0.64 +0.3
2,263,870 + Xcc-8004.2316.1 0.71 +0.6
2,263,871 - Xcc-8004.2316.1 0.71 -0.2
2,263,871 - Xcc-8004.2316.1 0.71 -0.6
2,263,871 - Xcc-8004.2316.1 0.71 -0.1
2,263,892 - Xcc-8004.2316.1 0.73 +0.4
2,263,892 - Xcc-8004.2316.1 0.73 -0.8
2,263,892 - Xcc-8004.2316.1 0.73 +1.0
2,263,892 - Xcc-8004.2316.1 0.73 -2.8
2,263,892 - Xcc-8004.2316.1 0.73 -1.6
2,263,892 - Xcc-8004.2316.1 0.73 -0.4
2,263,960 + Xcc-8004.2316.1 0.80 -0.9
2,263,960 + Xcc-8004.2316.1 0.80 +0.2
2,263,961 - Xcc-8004.2316.1 0.80 +0.4
2,264,052 + Xcc-8004.2316.1 0.89 +1.0
2,264,181 + -0.7
2,264,182 - -1.2
2,264,233 - Xcc-8004.2317.1 0.15 +0.7
2,264,233 - Xcc-8004.2317.1 0.15 -1.0
2,264,241 + Xcc-8004.2317.1 0.17 +1.4
2,264,382 + Xcc-8004.2317.1 0.47 -0.4
2,264,383 - Xcc-8004.2317.1 0.47 +0.7
2,264,676 - -1.7
2,264,922 + Xcc-8004.2318.1 0.22 -1.6
2,264,947 - Xcc-8004.2318.1 0.24 +0.1
2,265,072 + Xcc-8004.2318.1 0.34 -0.2
2,265,142 - Xcc-8004.2318.1 0.40 -1.4
2,265,186 + Xcc-8004.2318.1 0.44 +0.4
2,265,186 + Xcc-8004.2318.1 0.44 -1.2
2,265,186 + Xcc-8004.2318.1 0.44 -0.5
2,265,187 - Xcc-8004.2318.1 0.44 +0.5
2,265,187 - Xcc-8004.2318.1 0.44 +1.6
2,265,187 - Xcc-8004.2318.1 0.44 -0.8
2,265,187 - Xcc-8004.2318.1 0.44 +1.1
2,265,288 - Xcc-8004.2318.1 0.53 +0.8
2,265,598 - Xcc-8004.2318.1 0.78 +0.6
2,265,598 - Xcc-8004.2318.1 0.78 +1.0
2,265,609 + Xcc-8004.2318.1 0.79 -0.8
2,265,610 - Xcc-8004.2318.1 0.79 -0.0
2,265,610 - Xcc-8004.2318.1 0.79 -1.8

Or see this region's nucleotide sequence