Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.230.1 and Xcc-8004.231.1 are separated by 359 nucleotides Xcc-8004.231.1 and Xcc-8004.232.1 are separated by 15 nucleotides Xcc-8004.232.1 and Xcc-8004.233.1 are separated by 3 nucleotides
Xcc-8004.230.1: Xcc-8004.230.1 - putative; ORF located using Glimmer/Genemark, at 227,519 to 228,613
Xcc-8004.230.1
Xcc-8004.231.1: Xcc-8004.231.1 - partition protein, at 228,973 to 229,605
Xcc-8004.231.1
Xcc-8004.232.1: Xcc-8004.232.1 - Phosphohistidine phosphatase SixA, at 229,621 to 230,097
Xcc-8004.232.1
Xcc-8004.233.1: Xcc-8004.233.1 - FIG01211637: hypothetical protein, at 230,101 to 230,673
Xcc-8004.233.1
Position (kb) 228
229
230 Strain fitness (log2 ratio) -2
-1
0
1
2 at 227.982 kb on + strand, within Xcc-8004.230.1 at 227.982 kb on + strand, within Xcc-8004.230.1 at 227.982 kb on + strand, within Xcc-8004.230.1 at 227.982 kb on + strand, within Xcc-8004.230.1 at 227.983 kb on - strand, within Xcc-8004.230.1 at 227.983 kb on - strand, within Xcc-8004.230.1 at 227.990 kb on + strand, within Xcc-8004.230.1 at 227.991 kb on - strand, within Xcc-8004.230.1 at 228.110 kb on + strand, within Xcc-8004.230.1 at 228.110 kb on + strand, within Xcc-8004.230.1 at 228.110 kb on + strand, within Xcc-8004.230.1 at 228.110 kb on + strand, within Xcc-8004.230.1 at 228.110 kb on + strand, within Xcc-8004.230.1 at 228.110 kb on + strand, within Xcc-8004.230.1 at 228.110 kb on + strand, within Xcc-8004.230.1 at 228.110 kb on + strand, within Xcc-8004.230.1 at 228.110 kb on + strand, within Xcc-8004.230.1 at 228.111 kb on - strand, within Xcc-8004.230.1 at 228.111 kb on - strand, within Xcc-8004.230.1 at 228.261 kb on + strand, within Xcc-8004.230.1 at 228.262 kb on - strand, within Xcc-8004.230.1 at 228.285 kb on + strand, within Xcc-8004.230.1 at 228.286 kb on - strand, within Xcc-8004.230.1 at 228.286 kb on - strand, within Xcc-8004.230.1 at 228.286 kb on - strand, within Xcc-8004.230.1 at 228.286 kb on - strand, within Xcc-8004.230.1 at 228.286 kb on - strand, within Xcc-8004.230.1 at 228.406 kb on + strand, within Xcc-8004.230.1 at 228.407 kb on - strand, within Xcc-8004.230.1 at 228.407 kb on - strand, within Xcc-8004.230.1 at 228.407 kb on - strand, within Xcc-8004.230.1 at 228.407 kb on - strand, within Xcc-8004.230.1 at 228.430 kb on - strand, within Xcc-8004.230.1 at 228.430 kb on - strand, within Xcc-8004.230.1 at 228.481 kb on + strand, within Xcc-8004.230.1 at 228.481 kb on + strand, within Xcc-8004.230.1 at 228.481 kb on + strand, within Xcc-8004.230.1 at 228.482 kb on - strand, within Xcc-8004.230.1 at 228.611 kb on + strand at 228.611 kb on + strand at 228.611 kb on + strand at 228.611 kb on + strand at 228.611 kb on + strand at 228.611 kb on + strand at 228.611 kb on + strand at 228.612 kb on - strand at 228.612 kb on - strand at 228.612 kb on - strand at 228.795 kb on + strand at 228.795 kb on + strand at 228.795 kb on + strand at 228.795 kb on + strand at 228.795 kb on + strand at 228.795 kb on + strand at 228.795 kb on + strand at 228.796 kb on - strand at 228.796 kb on - strand at 228.820 kb on + strand at 228.820 kb on + strand at 228.820 kb on + strand at 228.820 kb on + strand at 228.821 kb on - strand at 228.821 kb on - strand at 228.892 kb on + strand at 228.892 kb on + strand at 228.892 kb on + strand at 228.902 kb on - strand at 228.902 kb on - strand at 228.902 kb on - strand at 228.915 kb on + strand at 228.916 kb on - strand at 228.916 kb on - strand at 228.916 kb on - strand at 228.916 kb on - strand at 228.938 kb on + strand at 228.938 kb on + strand at 228.938 kb on + strand at 228.938 kb on + strand at 228.939 kb on - strand at 228.939 kb on - strand at 228.939 kb on - strand at 228.939 kb on - strand at 228.939 kb on - strand at 229.459 kb on + strand, within Xcc-8004.231.1 at 229.495 kb on + strand, within Xcc-8004.231.1 at 229.495 kb on + strand, within Xcc-8004.231.1 at 229.495 kb on + strand, within Xcc-8004.231.1 at 229.495 kb on + strand, within Xcc-8004.231.1 at 229.495 kb on + strand, within Xcc-8004.231.1 at 229.495 kb on + strand, within Xcc-8004.231.1 at 229.495 kb on + strand, within Xcc-8004.231.1 at 229.495 kb on + strand, within Xcc-8004.231.1 at 229.495 kb on + strand, within Xcc-8004.231.1 at 229.495 kb on + strand, within Xcc-8004.231.1 at 229.495 kb on + strand, within Xcc-8004.231.1 at 229.495 kb on + strand, within Xcc-8004.231.1 at 229.495 kb on + strand, within Xcc-8004.231.1 at 229.495 kb on + strand, within Xcc-8004.231.1 at 229.495 kb on + strand, within Xcc-8004.231.1 at 229.495 kb on + strand, within Xcc-8004.231.1 at 229.495 kb on + strand, within Xcc-8004.231.1 at 229.495 kb on + strand, within Xcc-8004.231.1 at 229.495 kb on + strand, within Xcc-8004.231.1 at 229.496 kb on - strand, within Xcc-8004.231.1 at 229.496 kb on - strand, within Xcc-8004.231.1 at 229.496 kb on - strand, within Xcc-8004.231.1 at 229.496 kb on - strand, within Xcc-8004.231.1 at 229.496 kb on - strand, within Xcc-8004.231.1 at 229.496 kb on - strand, within Xcc-8004.231.1 at 229.496 kb on - strand, within Xcc-8004.231.1 at 229.496 kb on - strand, within Xcc-8004.231.1 at 229.496 kb on - strand, within Xcc-8004.231.1 at 229.496 kb on - strand, within Xcc-8004.231.1 at 229.496 kb on - strand, within Xcc-8004.231.1 at 229.496 kb on - strand, within Xcc-8004.231.1 at 229.496 kb on - strand, within Xcc-8004.231.1 at 229.496 kb on - strand, within Xcc-8004.231.1 at 229.496 kb on - strand, within Xcc-8004.231.1 at 229.496 kb on - strand, within Xcc-8004.231.1 at 229.496 kb on - strand, within Xcc-8004.231.1 at 229.603 kb on + strand at 229.603 kb on + strand at 229.603 kb on + strand at 229.603 kb on + strand at 229.603 kb on + strand at 229.603 kb on + strand at 229.604 kb on - strand at 229.604 kb on - strand at 229.620 kb on + strand at 229.620 kb on + strand at 229.620 kb on + strand at 229.621 kb on - strand at 229.864 kb on + strand, within Xcc-8004.232.1 at 229.864 kb on + strand, within Xcc-8004.232.1 at 229.864 kb on + strand, within Xcc-8004.232.1 at 229.864 kb on + strand, within Xcc-8004.232.1 at 229.864 kb on + strand, within Xcc-8004.232.1 at 229.864 kb on + strand, within Xcc-8004.232.1 at 229.865 kb on - strand, within Xcc-8004.232.1 at 229.865 kb on - strand, within Xcc-8004.232.1 at 229.865 kb on - strand, within Xcc-8004.232.1 at 229.865 kb on - strand, within Xcc-8004.232.1 at 229.865 kb on - strand, within Xcc-8004.232.1 at 229.865 kb on - strand, within Xcc-8004.232.1 at 229.865 kb on - strand, within Xcc-8004.232.1 at 229.865 kb on - strand, within Xcc-8004.232.1 at 229.865 kb on - strand, within Xcc-8004.232.1 at 229.865 kb on - strand, within Xcc-8004.232.1 at 229.865 kb on - strand, within Xcc-8004.232.1 at 229.996 kb on + strand, within Xcc-8004.232.1 at 229.996 kb on + strand, within Xcc-8004.232.1 at 229.996 kb on + strand, within Xcc-8004.232.1 at 229.997 kb on - strand, within Xcc-8004.232.1 at 230.353 kb on + strand, within Xcc-8004.233.1 at 230.353 kb on + strand, within Xcc-8004.233.1 at 230.353 kb on + strand, within Xcc-8004.233.1 at 230.354 kb on - strand, within Xcc-8004.233.1 at 230.354 kb on - strand, within Xcc-8004.233.1 at 230.354 kb on - strand, within Xcc-8004.233.1 at 230.398 kb on + strand, within Xcc-8004.233.1 at 230.542 kb on + strand, within Xcc-8004.233.1 at 230.542 kb on + strand, within Xcc-8004.233.1 at 230.542 kb on + strand, within Xcc-8004.233.1 at 230.542 kb on + strand, within Xcc-8004.233.1 at 230.543 kb on - strand, within Xcc-8004.233.1 at 230.568 kb on + strand, within Xcc-8004.233.1 at 230.568 kb on + strand, within Xcc-8004.233.1 at 230.569 kb on - strand, within Xcc-8004.233.1 at 230.569 kb on - strand, within Xcc-8004.233.1 at 230.569 kb on - strand, within Xcc-8004.233.1 at 230.569 kb on - strand, within Xcc-8004.233.1 at 230.569 kb on - strand, within Xcc-8004.233.1 at 230.569 kb on - strand, within Xcc-8004.233.1 at 230.569 kb on - strand, within Xcc-8004.233.1
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X remove 227,982 + Xcc-8004.230.1 0.42 -0.3 227,982 + Xcc-8004.230.1 0.42 -1.1 227,982 + Xcc-8004.230.1 0.42 +0.0 227,982 + Xcc-8004.230.1 0.42 +0.6 227,983 - Xcc-8004.230.1 0.42 -1.1 227,983 - Xcc-8004.230.1 0.42 +0.9 227,990 + Xcc-8004.230.1 0.43 +1.9 227,991 - Xcc-8004.230.1 0.43 -0.8 228,110 + Xcc-8004.230.1 0.54 +1.9 228,110 + Xcc-8004.230.1 0.54 -1.1 228,110 + Xcc-8004.230.1 0.54 -0.0 228,110 + Xcc-8004.230.1 0.54 +0.2 228,110 + Xcc-8004.230.1 0.54 +0.2 228,110 + Xcc-8004.230.1 0.54 +0.4 228,110 + Xcc-8004.230.1 0.54 -0.7 228,110 + Xcc-8004.230.1 0.54 +2.0 228,110 + Xcc-8004.230.1 0.54 +0.6 228,111 - Xcc-8004.230.1 0.54 +0.3 228,111 - Xcc-8004.230.1 0.54 -0.4 228,261 + Xcc-8004.230.1 0.68 +0.9 228,262 - Xcc-8004.230.1 0.68 +0.1 228,285 + Xcc-8004.230.1 0.70 +0.4 228,286 - Xcc-8004.230.1 0.70 -1.1 228,286 - Xcc-8004.230.1 0.70 +1.3 228,286 - Xcc-8004.230.1 0.70 +0.3 228,286 - Xcc-8004.230.1 0.70 -1.1 228,286 - Xcc-8004.230.1 0.70 -0.4 228,406 + Xcc-8004.230.1 0.81 -1.1 228,407 - Xcc-8004.230.1 0.81 +0.0 228,407 - Xcc-8004.230.1 0.81 +1.0 228,407 - Xcc-8004.230.1 0.81 +0.5 228,407 - Xcc-8004.230.1 0.81 -0.3 228,430 - Xcc-8004.230.1 0.83 -1.1 228,430 - Xcc-8004.230.1 0.83 +0.1 228,481 + Xcc-8004.230.1 0.88 +0.3 228,481 + Xcc-8004.230.1 0.88 -1.7 228,481 + Xcc-8004.230.1 0.88 +0.3 228,482 - Xcc-8004.230.1 0.88 -1.1 228,611 + -1.5 228,611 + +0.3 228,611 + -1.6 228,611 + -0.8 228,611 + +1.1 228,611 + -0.4 228,611 + -0.1 228,612 - +1.2 228,612 - -0.5 228,612 - +1.0 228,795 + +0.5 228,795 + -0.9 228,795 + +2.5 228,795 + +0.0 228,795 + +0.4 228,795 + -0.7 228,795 + -0.2 228,796 - +1.0 228,796 - -0.1 228,820 + -1.6 228,820 + +0.3 228,820 + -1.5 228,820 + +0.1 228,821 - +0.8 228,821 - -0.8 228,892 + -0.1 228,892 + +0.2 228,892 + -0.5 228,902 - -1.7 228,902 - -0.1 228,902 - -1.4 228,915 + -0.5 228,916 - +0.4 228,916 - +0.1 228,916 - -0.5 228,916 - +0.1 228,938 + +0.0 228,938 + +0.7 228,938 + -0.3 228,938 + -0.3 228,939 - +0.6 228,939 - -0.7 228,939 - +0.5 228,939 - +0.1 228,939 - -0.1 229,459 + Xcc-8004.231.1 0.77 -0.9 229,495 + Xcc-8004.231.1 0.82 -0.6 229,495 + Xcc-8004.231.1 0.82 -0.2 229,495 + Xcc-8004.231.1 0.82 -1.2 229,495 + Xcc-8004.231.1 0.82 +0.5 229,495 + Xcc-8004.231.1 0.82 -2.1 229,495 + Xcc-8004.231.1 0.82 +0.5 229,495 + Xcc-8004.231.1 0.82 +0.6 229,495 + Xcc-8004.231.1 0.82 -0.1 229,495 + Xcc-8004.231.1 0.82 +0.0 229,495 + Xcc-8004.231.1 0.82 +0.2 229,495 + Xcc-8004.231.1 0.82 -2.1 229,495 + Xcc-8004.231.1 0.82 -0.3 229,495 + Xcc-8004.231.1 0.82 -0.7 229,495 + Xcc-8004.231.1 0.82 +0.7 229,495 + Xcc-8004.231.1 0.82 +0.1 229,495 + Xcc-8004.231.1 0.82 +1.7 229,495 + Xcc-8004.231.1 0.82 -1.0 229,495 + Xcc-8004.231.1 0.82 -2.4 229,495 + Xcc-8004.231.1 0.82 -0.1 229,496 - Xcc-8004.231.1 0.83 -1.3 229,496 - Xcc-8004.231.1 0.83 +1.2 229,496 - Xcc-8004.231.1 0.83 -0.9 229,496 - Xcc-8004.231.1 0.83 -1.5 229,496 - Xcc-8004.231.1 0.83 +0.7 229,496 - Xcc-8004.231.1 0.83 -0.6 229,496 - Xcc-8004.231.1 0.83 +1.9 229,496 - Xcc-8004.231.1 0.83 -1.3 229,496 - Xcc-8004.231.1 0.83 -0.3 229,496 - Xcc-8004.231.1 0.83 +0.2 229,496 - Xcc-8004.231.1 0.83 -0.7 229,496 - Xcc-8004.231.1 0.83 +0.1 229,496 - Xcc-8004.231.1 0.83 +0.3 229,496 - Xcc-8004.231.1 0.83 +1.0 229,496 - Xcc-8004.231.1 0.83 +0.7 229,496 - Xcc-8004.231.1 0.83 -1.6 229,496 - Xcc-8004.231.1 0.83 -0.2 229,603 + -0.1 229,603 + -0.9 229,603 + +0.5 229,603 + -1.9 229,603 + -1.5 229,603 + +1.0 229,604 - +0.9 229,604 - +2.0 229,620 + -0.2 229,620 + -1.2 229,620 + +0.8 229,621 - +1.2 229,864 + Xcc-8004.232.1 0.51 +0.6 229,864 + Xcc-8004.232.1 0.51 -1.4 229,864 + Xcc-8004.232.1 0.51 -1.9 229,864 + Xcc-8004.232.1 0.51 +0.5 229,864 + Xcc-8004.232.1 0.51 +0.5 229,864 + Xcc-8004.232.1 0.51 -0.3 229,865 - Xcc-8004.232.1 0.51 -0.3 229,865 - Xcc-8004.232.1 0.51 -0.8 229,865 - Xcc-8004.232.1 0.51 +2.5 229,865 - Xcc-8004.232.1 0.51 -0.4 229,865 - Xcc-8004.232.1 0.51 -0.7 229,865 - Xcc-8004.232.1 0.51 +0.1 229,865 - Xcc-8004.232.1 0.51 +0.3 229,865 - Xcc-8004.232.1 0.51 +0.0 229,865 - Xcc-8004.232.1 0.51 +0.2 229,865 - Xcc-8004.232.1 0.51 -1.1 229,865 - Xcc-8004.232.1 0.51 -0.5 229,996 + Xcc-8004.232.1 0.79 +0.2 229,996 + Xcc-8004.232.1 0.79 +0.5 229,996 + Xcc-8004.232.1 0.79 +0.4 229,997 - Xcc-8004.232.1 0.79 -0.5 230,353 + Xcc-8004.233.1 0.44 -0.6 230,353 + Xcc-8004.233.1 0.44 +0.2 230,353 + Xcc-8004.233.1 0.44 -0.6 230,354 - Xcc-8004.233.1 0.44 -0.2 230,354 - Xcc-8004.233.1 0.44 -1.5 230,354 - Xcc-8004.233.1 0.44 +2.2 230,398 + Xcc-8004.233.1 0.52 +0.6 230,542 + Xcc-8004.233.1 0.77 +0.7 230,542 + Xcc-8004.233.1 0.77 -1.2 230,542 + Xcc-8004.233.1 0.77 +0.3 230,542 + Xcc-8004.233.1 0.77 -0.8 230,543 - Xcc-8004.233.1 0.77 +0.1 230,568 + Xcc-8004.233.1 0.82 +1.5 230,568 + Xcc-8004.233.1 0.82 -1.4 230,569 - Xcc-8004.233.1 0.82 -0.3 230,569 - Xcc-8004.233.1 0.82 -0.7 230,569 - Xcc-8004.233.1 0.82 +0.6 230,569 - Xcc-8004.233.1 0.82 -1.5 230,569 - Xcc-8004.233.1 0.82 -1.4 230,569 - Xcc-8004.233.1 0.82 +0.2 230,569 - Xcc-8004.233.1 0.82 +0.4
Or see this region's nucleotide sequence