Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.2153.1

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X
2,081,150	+		Xcc-8004.2152.1	0.52	+0.8
2,081,151	-		Xcc-8004.2152.1	0.52	-0.6
2,081,151	-		Xcc-8004.2152.1	0.52	-0.7
2,081,151	-		Xcc-8004.2152.1	0.52	+0.9
2,081,183	+		Xcc-8004.2152.1	0.54	-0.7
2,081,183	+		Xcc-8004.2152.1	0.54	+0.0
2,081,228	+		Xcc-8004.2152.1	0.56	+0.5
2,081,228	+		Xcc-8004.2152.1	0.56	+0.0
2,081,228	+		Xcc-8004.2152.1	0.56	+1.3
2,081,228	+		Xcc-8004.2152.1	0.56	+0.6
2,081,229	-		Xcc-8004.2152.1	0.56	+1.2
2,081,229	-		Xcc-8004.2152.1	0.56	-0.3
2,081,229	-		Xcc-8004.2152.1	0.56	+0.5
2,081,253	+		Xcc-8004.2152.1	0.57	-1.6
2,081,253	+		Xcc-8004.2152.1	0.57	-2.1
2,081,254	-		Xcc-8004.2152.1	0.57	+0.4
2,081,300	+		Xcc-8004.2152.1	0.60	-0.8
2,081,300	+		Xcc-8004.2152.1	0.60	-0.5
2,081,300	+		Xcc-8004.2152.1	0.60	-1.6
2,081,300	+		Xcc-8004.2152.1	0.60	-0.4
2,081,300	+		Xcc-8004.2152.1	0.60	+0.2
2,081,300	+		Xcc-8004.2152.1	0.60	+0.2
2,081,301	-		Xcc-8004.2152.1	0.60	+1.2
2,081,312	+		Xcc-8004.2152.1	0.60	+0.1
2,081,313	-		Xcc-8004.2152.1	0.60	+0.2
2,081,313	-		Xcc-8004.2152.1	0.60	-0.4
2,081,415	-		Xcc-8004.2152.1	0.66	-0.8
2,081,460	-		Xcc-8004.2152.1	0.68	-1.8
2,081,639	+		Xcc-8004.2152.1	0.78	+0.9
2,081,640	-		Xcc-8004.2152.1	0.78	+0.6
2,081,640	-		Xcc-8004.2152.1	0.78	-0.3
2,081,640	-		Xcc-8004.2152.1	0.78	-1.2
2,081,675	+		Xcc-8004.2152.1	0.79	+0.7
2,081,675	+		Xcc-8004.2152.1	0.79	+0.1
2,081,675	+		Xcc-8004.2152.1	0.79	+0.5
2,081,675	+		Xcc-8004.2152.1	0.79	-0.5
2,081,683	+		Xcc-8004.2152.1	0.80	+0.5
2,081,984	+				-1.5
2,081,984	+				-0.5
2,082,054	+				-0.7
2,082,215	+		Xcc-8004.2153.1	0.11	+0.4
2,082,216	-		Xcc-8004.2153.1	0.11	-0.7
2,082,216	-		Xcc-8004.2153.1	0.11	-0.1
2,082,381	+		Xcc-8004.2153.1	0.31	-0.5
2,082,381	+		Xcc-8004.2153.1	0.31	-0.6
2,082,382	-		Xcc-8004.2153.1	0.31	-1.1
2,082,638	+		Xcc-8004.2153.1	0.63	-1.0
2,082,638	+		Xcc-8004.2153.1	0.63	-0.2
2,082,638	+		Xcc-8004.2153.1	0.63	-1.2
2,082,638	+		Xcc-8004.2153.1	0.63	-0.2
2,082,638	+		Xcc-8004.2153.1	0.63	-1.9
2,082,638	+		Xcc-8004.2153.1	0.63	-1.5
2,082,638	+		Xcc-8004.2153.1	0.63	+0.5
2,082,638	+		Xcc-8004.2153.1	0.63	-0.3
2,082,639	-		Xcc-8004.2153.1	0.64	-1.1
2,082,639	-		Xcc-8004.2153.1	0.64	-0.1
2,082,782	-		Xcc-8004.2153.1	0.81	-0.3
2,082,816	-		Xcc-8004.2153.1	0.86	-1.4
2,082,865	+				-0.7
2,082,866	-				-0.6
2,082,891	+				-1.5
2,082,891	+				-0.5
2,082,892	-				-0.0
2,082,892	-				-1.3
2,082,892	-				-0.5
2,082,892	-				-1.2
2,082,926	+				+1.2
2,082,926	+				+0.5
2,082,926	+				+0.2
2,083,441	+				+1.3
2,083,441	+				-2.5
2,083,441	+				+0.1
2,083,442	-				+1.0
2,083,442	-				+0.7
2,083,634	+		Xcc-8004.2155.1	0.30	-1.7
2,083,634	+		Xcc-8004.2155.1	0.30	+0.6
2,083,634	+		Xcc-8004.2155.1	0.30	-0.9
2,083,634	+		Xcc-8004.2155.1	0.30	+0.9
2,083,678	+		Xcc-8004.2155.1	0.39	+0.3
2,083,679	-		Xcc-8004.2155.1	0.39	-1.2
2,083,691	+		Xcc-8004.2155.1	0.42	-1.1
2,083,691	+		Xcc-8004.2155.1	0.42	+0.5
2,083,691	+		Xcc-8004.2155.1	0.42	-1.7
2,083,692	-		Xcc-8004.2155.1	0.42	-0.5
2,083,692	-		Xcc-8004.2155.1	0.42	-0.8
2,083,692	-		Xcc-8004.2155.1	0.42	+0.5
2,083,692	-		Xcc-8004.2155.1	0.42	-2.5
2,083,694	+		Xcc-8004.2155.1	0.42	-0.7
2,083,694	+		Xcc-8004.2155.1	0.42	+0.3
2,083,694	+		Xcc-8004.2155.1	0.42	+0.1
2,083,694	+		Xcc-8004.2155.1	0.42	+0.2
2,083,694	+		Xcc-8004.2155.1	0.42	-1.4
2,083,695	-		Xcc-8004.2155.1	0.42	+2.5
2,083,695	-		Xcc-8004.2155.1	0.42	-2.0
2,083,695	-		Xcc-8004.2155.1	0.42	-1.7
2,083,695	-		Xcc-8004.2155.1	0.42	+0.2
2,083,733	+		Xcc-8004.2155.1	0.50	-0.9
2,083,733	+		Xcc-8004.2155.1	0.50	-0.1