Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.2089.1

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X
2,004,890	-				-1.4
2,004,890	-				+0.5
2,004,938	+				+0.2
2,004,939	-				-0.0
2,005,075	+		Xcc-8004.2089.1	0.15	-1.2
2,005,075	+		Xcc-8004.2089.1	0.15	+1.0
2,005,076	-		Xcc-8004.2089.1	0.15	-0.3
2,005,076	-		Xcc-8004.2089.1	0.15	-1.1
2,005,218	-		Xcc-8004.2089.1	0.27	-1.2
2,005,346	+		Xcc-8004.2089.1	0.38	-1.8
2,005,388	+		Xcc-8004.2089.1	0.41	-0.2
2,005,389	-		Xcc-8004.2089.1	0.41	+0.2
2,005,389	-		Xcc-8004.2089.1	0.41	-2.3
2,005,495	-		Xcc-8004.2089.1	0.50	-0.6
2,005,697	+		Xcc-8004.2089.1	0.67	+0.5
2,005,698	-		Xcc-8004.2089.1	0.67	-1.0
2,005,733	-		Xcc-8004.2089.1	0.70	-2.3
2,005,890	-		Xcc-8004.2089.1	0.83	-0.4
2,005,953	+		Xcc-8004.2089.1	0.88	-0.1
2,005,954	-		Xcc-8004.2089.1	0.88	-0.3
2,005,954	-		Xcc-8004.2089.1	0.88	-0.5
2,005,954	-		Xcc-8004.2089.1	0.88	-0.1
2,006,403	-		Xcc-8004.2091.1	0.34	-0.8
2,006,422	+		Xcc-8004.2091.1	0.36	+0.9
2,006,602	-		Xcc-8004.2091.1	0.59	-1.1
2,006,602	-		Xcc-8004.2091.1	0.59	-0.1
2,006,724	+		Xcc-8004.2091.1	0.74	-0.6
2,006,724	+		Xcc-8004.2091.1	0.74	-0.8
2,006,725	-		Xcc-8004.2091.1	0.74	+0.7
2,006,742	+		Xcc-8004.2091.1	0.77	+0.4
2,006,743	-		Xcc-8004.2091.1	0.77	-0.2
2,006,779	-		Xcc-8004.2091.1	0.81	+0.5
2,006,787	+		Xcc-8004.2091.1	0.82	+0.4
2,006,787	+		Xcc-8004.2091.1	0.82	+0.5
2,006,788	-		Xcc-8004.2091.1	0.82	-1.1
2,006,788	-		Xcc-8004.2091.1	0.82	-0.9
2,006,790	+		Xcc-8004.2091.1	0.83	-0.8
2,006,791	-		Xcc-8004.2091.1	0.83	-0.3