Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.1914.1

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.1912.1 and Xcc-8004.1913.1 are separated by 109 nucleotidesXcc-8004.1913.1 and Xcc-8004.1914.1 are separated by 110 nucleotidesXcc-8004.1914.1 and Xcc-8004.1915.1 are separated by 90 nucleotides Xcc-8004.1912.1: Xcc-8004.1912.1 - Cell wall-associated hydrolases (invasion-associated proteins), at 1,842,745 to 1,843,488 Xcc-8004.1912.1 Xcc-8004.1913.1: Xcc-8004.1913.1 - NLP/P60 family protein, at 1,843,598 to 1,844,137 Xcc-8004.1913.1 Xcc-8004.1914.1: Xcc-8004.1914.1 - FKBP-type peptidyl-prolyl cis-trans isomerase SlyD (EC 5.2.1.8), at 1,844,248 to 1,844,727 Xcc-8004.1914.1 Xcc-8004.1915.1: Xcc-8004.1915.1 - Transport protein, at 1,844,818 to 1,846,062 Xcc-8004.1915.1 Position (kb) 1844 1845Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1843.544 kb on + strandat 1843.545 kb on - strandat 1843.545 kb on - strandat 1843.545 kb on - strandat 1843.604 kb on + strandat 1843.604 kb on + strandat 1843.626 kb on + strandat 1843.626 kb on + strandat 1843.627 kb on - strandat 1843.627 kb on - strandat 1843.641 kb on + strandat 1843.641 kb on + strandat 1843.641 kb on + strandat 1843.641 kb on + strandat 1843.642 kb on - strandat 1843.716 kb on + strand, within Xcc-8004.1913.1at 1843.716 kb on + strand, within Xcc-8004.1913.1at 1843.716 kb on + strand, within Xcc-8004.1913.1at 1843.717 kb on - strand, within Xcc-8004.1913.1at 1843.717 kb on - strand, within Xcc-8004.1913.1at 1843.717 kb on - strand, within Xcc-8004.1913.1at 1843.717 kb on - strand, within Xcc-8004.1913.1at 1843.860 kb on + strand, within Xcc-8004.1913.1at 1843.860 kb on + strand, within Xcc-8004.1913.1at 1843.860 kb on + strand, within Xcc-8004.1913.1at 1843.860 kb on + strand, within Xcc-8004.1913.1at 1843.861 kb on - strand, within Xcc-8004.1913.1at 1843.861 kb on - strand, within Xcc-8004.1913.1at 1843.861 kb on - strand, within Xcc-8004.1913.1at 1843.866 kb on + strand, within Xcc-8004.1913.1at 1843.866 kb on + strand, within Xcc-8004.1913.1at 1843.866 kb on + strand, within Xcc-8004.1913.1at 1843.866 kb on + strand, within Xcc-8004.1913.1at 1843.866 kb on + strand, within Xcc-8004.1913.1at 1843.866 kb on + strand, within Xcc-8004.1913.1at 1843.866 kb on + strand, within Xcc-8004.1913.1at 1843.866 kb on + strand, within Xcc-8004.1913.1at 1843.866 kb on + strand, within Xcc-8004.1913.1at 1843.866 kb on + strand, within Xcc-8004.1913.1at 1843.866 kb on + strand, within Xcc-8004.1913.1at 1843.866 kb on + strand, within Xcc-8004.1913.1at 1843.866 kb on + strand, within Xcc-8004.1913.1at 1843.866 kb on + strand, within Xcc-8004.1913.1at 1843.866 kb on + strand, within Xcc-8004.1913.1at 1843.866 kb on + strand, within Xcc-8004.1913.1at 1843.866 kb on + strand, within Xcc-8004.1913.1at 1843.866 kb on + strand, within Xcc-8004.1913.1at 1843.866 kb on + strand, within Xcc-8004.1913.1at 1843.866 kb on + strand, within Xcc-8004.1913.1at 1843.866 kb on + strand, within Xcc-8004.1913.1at 1843.867 kb on - strand, within Xcc-8004.1913.1at 1843.867 kb on - strand, within Xcc-8004.1913.1at 1843.867 kb on - strand, within Xcc-8004.1913.1at 1843.867 kb on - strand, within Xcc-8004.1913.1at 1843.867 kb on - strand, within Xcc-8004.1913.1at 1843.867 kb on - strand, within Xcc-8004.1913.1at 1843.867 kb on - strand, within Xcc-8004.1913.1at 1843.867 kb on - strand, within Xcc-8004.1913.1at 1843.867 kb on - strand, within Xcc-8004.1913.1at 1843.867 kb on - strand, within Xcc-8004.1913.1at 1843.867 kb on - strand, within Xcc-8004.1913.1at 1843.867 kb on - strand, within Xcc-8004.1913.1at 1843.867 kb on - strand, within Xcc-8004.1913.1at 1843.867 kb on - strand, within Xcc-8004.1913.1at 1843.867 kb on - strand, within Xcc-8004.1913.1at 1843.867 kb on - strand, within Xcc-8004.1913.1at 1843.867 kb on - strand, within Xcc-8004.1913.1at 1843.867 kb on - strand, within Xcc-8004.1913.1at 1843.867 kb on - strand, within Xcc-8004.1913.1at 1843.867 kb on - strand, within Xcc-8004.1913.1at 1843.867 kb on - strand, within Xcc-8004.1913.1at 1843.867 kb on - strand, within Xcc-8004.1913.1at 1843.867 kb on - strand, within Xcc-8004.1913.1at 1843.867 kb on - strand, within Xcc-8004.1913.1at 1843.867 kb on - strand, within Xcc-8004.1913.1at 1843.867 kb on - strand, within Xcc-8004.1913.1at 1843.867 kb on - strand, within Xcc-8004.1913.1at 1843.867 kb on - strand, within Xcc-8004.1913.1at 1843.867 kb on - strand, within Xcc-8004.1913.1at 1843.867 kb on - strand, within Xcc-8004.1913.1at 1843.867 kb on - strand, within Xcc-8004.1913.1at 1843.867 kb on - strand, within Xcc-8004.1913.1at 1843.867 kb on - strand, within Xcc-8004.1913.1at 1844.040 kb on - strand, within Xcc-8004.1913.1at 1844.040 kb on - strand, within Xcc-8004.1913.1at 1844.131 kb on + strandat 1844.196 kb on + strandat 1844.197 kb on - strandat 1844.197 kb on - strandat 1844.197 kb on - strandat 1844.197 kb on - strandat 1844.197 kb on - strandat 1844.284 kb on + strandat 1844.285 kb on - strandat 1844.285 kb on - strandat 1844.449 kb on + strand, within Xcc-8004.1914.1at 1844.459 kb on - strand, within Xcc-8004.1914.1at 1844.834 kb on + strandat 1844.834 kb on + strandat 1844.834 kb on + strandat 1844.834 kb on + strandat 1844.835 kb on - strandat 1844.835 kb on - strandat 1844.835 kb on - strandat 1844.835 kb on - strandat 1845.010 kb on + strand, within Xcc-8004.1915.1at 1845.010 kb on + strand, within Xcc-8004.1915.1at 1845.010 kb on + strand, within Xcc-8004.1915.1at 1845.010 kb on + strand, within Xcc-8004.1915.1at 1845.010 kb on + strand, within Xcc-8004.1915.1at 1845.010 kb on + strand, within Xcc-8004.1915.1at 1845.010 kb on + strand, within Xcc-8004.1915.1at 1845.010 kb on + strand, within Xcc-8004.1915.1at 1845.010 kb on + strand, within Xcc-8004.1915.1at 1845.010 kb on + strand, within Xcc-8004.1915.1at 1845.011 kb on - strand, within Xcc-8004.1915.1at 1845.011 kb on - strand, within Xcc-8004.1915.1at 1845.011 kb on - strand, within Xcc-8004.1915.1at 1845.011 kb on - strand, within Xcc-8004.1915.1at 1845.011 kb on - strand, within Xcc-8004.1915.1at 1845.011 kb on - strand, within Xcc-8004.1915.1at 1845.011 kb on - strand, within Xcc-8004.1915.1at 1845.011 kb on - strand, within Xcc-8004.1915.1at 1845.011 kb on - strand, within Xcc-8004.1915.1at 1845.011 kb on - strand, within Xcc-8004.1915.1at 1845.011 kb on - strand, within Xcc-8004.1915.1at 1845.011 kb on - strand, within Xcc-8004.1915.1at 1845.011 kb on - strand, within Xcc-8004.1915.1at 1845.011 kb on - strand, within Xcc-8004.1915.1at 1845.011 kb on - strand, within Xcc-8004.1915.1at 1845.014 kb on + strand, within Xcc-8004.1915.1at 1845.015 kb on - strand, within Xcc-8004.1915.1at 1845.015 kb on - strand, within Xcc-8004.1915.1at 1845.015 kb on - strand, within Xcc-8004.1915.1at 1845.034 kb on + strand, within Xcc-8004.1915.1at 1845.034 kb on + strand, within Xcc-8004.1915.1at 1845.034 kb on + strand, within Xcc-8004.1915.1at 1845.035 kb on - strand, within Xcc-8004.1915.1at 1845.035 kb on - strand, within Xcc-8004.1915.1at 1845.035 kb on - strand, within Xcc-8004.1915.1at 1845.035 kb on - strand, within Xcc-8004.1915.1at 1845.121 kb on + strand, within Xcc-8004.1915.1at 1845.121 kb on + strand, within Xcc-8004.1915.1at 1845.121 kb on + strand, within Xcc-8004.1915.1at 1845.121 kb on + strand, within Xcc-8004.1915.1at 1845.121 kb on + strand, within Xcc-8004.1915.1at 1845.121 kb on + strand, within Xcc-8004.1915.1at 1845.121 kb on + strand, within Xcc-8004.1915.1at 1845.121 kb on + strand, within Xcc-8004.1915.1at 1845.121 kb on + strand, within Xcc-8004.1915.1at 1845.121 kb on + strand, within Xcc-8004.1915.1at 1845.121 kb on + strand, within Xcc-8004.1915.1at 1845.121 kb on + strand, within Xcc-8004.1915.1at 1845.122 kb on - strand, within Xcc-8004.1915.1at 1845.122 kb on - strand, within Xcc-8004.1915.1at 1845.122 kb on - strand, within Xcc-8004.1915.1at 1845.122 kb on - strand, within Xcc-8004.1915.1at 1845.122 kb on - strand, within Xcc-8004.1915.1at 1845.122 kb on - strand, within Xcc-8004.1915.1at 1845.122 kb on - strand, within Xcc-8004.1915.1at 1845.122 kb on - strand, within Xcc-8004.1915.1at 1845.202 kb on + strand, within Xcc-8004.1915.1at 1845.202 kb on + strand, within Xcc-8004.1915.1at 1845.202 kb on + strand, within Xcc-8004.1915.1at 1845.203 kb on - strand, within Xcc-8004.1915.1at 1845.203 kb on - strand, within Xcc-8004.1915.1at 1845.203 kb on - strand, within Xcc-8004.1915.1at 1845.203 kb on - strand, within Xcc-8004.1915.1at 1845.203 kb on - strand, within Xcc-8004.1915.1at 1845.280 kb on + strand, within Xcc-8004.1915.1at 1845.281 kb on - strand, within Xcc-8004.1915.1at 1845.281 kb on - strand, within Xcc-8004.1915.1at 1845.311 kb on - strand, within Xcc-8004.1915.1at 1845.442 kb on + strand, within Xcc-8004.1915.1at 1845.442 kb on + strand, within Xcc-8004.1915.1at 1845.442 kb on + strand, within Xcc-8004.1915.1at 1845.442 kb on + strand, within Xcc-8004.1915.1at 1845.443 kb on - strand, within Xcc-8004.1915.1at 1845.443 kb on - strand, within Xcc-8004.1915.1at 1845.443 kb on - strand, within Xcc-8004.1915.1at 1845.443 kb on - strand, within Xcc-8004.1915.1at 1845.652 kb on + strand, within Xcc-8004.1915.1at 1845.653 kb on - strand, within Xcc-8004.1915.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X
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1,843,544 + +0.5
1,843,545 - +1.0
1,843,545 - -0.4
1,843,545 - -1.1
1,843,604 + -1.0
1,843,604 + +1.2
1,843,626 + -1.6
1,843,626 + +0.1
1,843,627 - -1.0
1,843,627 - +0.3
1,843,641 + +0.2
1,843,641 + +0.9
1,843,641 + +0.1
1,843,641 + -0.6
1,843,642 - -0.4
1,843,716 + Xcc-8004.1913.1 0.22 +0.1
1,843,716 + Xcc-8004.1913.1 0.22 -0.1
1,843,716 + Xcc-8004.1913.1 0.22 +0.6
1,843,717 - Xcc-8004.1913.1 0.22 +0.3
1,843,717 - Xcc-8004.1913.1 0.22 -0.2
1,843,717 - Xcc-8004.1913.1 0.22 -0.1
1,843,717 - Xcc-8004.1913.1 0.22 +0.3
1,843,860 + Xcc-8004.1913.1 0.49 +0.7
1,843,860 + Xcc-8004.1913.1 0.49 +0.4
1,843,860 + Xcc-8004.1913.1 0.49 -0.1
1,843,860 + Xcc-8004.1913.1 0.49 -0.5
1,843,861 - Xcc-8004.1913.1 0.49 +0.1
1,843,861 - Xcc-8004.1913.1 0.49 -0.2
1,843,861 - Xcc-8004.1913.1 0.49 -0.3
1,843,866 + Xcc-8004.1913.1 0.50 -0.9
1,843,866 + Xcc-8004.1913.1 0.50 +0.4
1,843,866 + Xcc-8004.1913.1 0.50 +0.0
1,843,866 + Xcc-8004.1913.1 0.50 +0.3
1,843,866 + Xcc-8004.1913.1 0.50 +1.1
1,843,866 + Xcc-8004.1913.1 0.50 +0.7
1,843,866 + Xcc-8004.1913.1 0.50 +0.3
1,843,866 + Xcc-8004.1913.1 0.50 -0.5
1,843,866 + Xcc-8004.1913.1 0.50 +0.7
1,843,866 + Xcc-8004.1913.1 0.50 -0.3
1,843,866 + Xcc-8004.1913.1 0.50 +0.5
1,843,866 + Xcc-8004.1913.1 0.50 +1.2
1,843,866 + Xcc-8004.1913.1 0.50 +0.3
1,843,866 + Xcc-8004.1913.1 0.50 -0.1
1,843,866 + Xcc-8004.1913.1 0.50 -0.3
1,843,866 + Xcc-8004.1913.1 0.50 +0.8
1,843,866 + Xcc-8004.1913.1 0.50 +0.0
1,843,866 + Xcc-8004.1913.1 0.50 +0.4
1,843,866 + Xcc-8004.1913.1 0.50 +0.1
1,843,866 + Xcc-8004.1913.1 0.50 +1.1
1,843,866 + Xcc-8004.1913.1 0.50 +0.2
1,843,867 - Xcc-8004.1913.1 0.50 +0.5
1,843,867 - Xcc-8004.1913.1 0.50 +0.0
1,843,867 - Xcc-8004.1913.1 0.50 -0.3
1,843,867 - Xcc-8004.1913.1 0.50 +0.0
1,843,867 - Xcc-8004.1913.1 0.50 +0.5
1,843,867 - Xcc-8004.1913.1 0.50 +0.5
1,843,867 - Xcc-8004.1913.1 0.50 -0.0
1,843,867 - Xcc-8004.1913.1 0.50 +0.7
1,843,867 - Xcc-8004.1913.1 0.50 -0.5
1,843,867 - Xcc-8004.1913.1 0.50 -0.3
1,843,867 - Xcc-8004.1913.1 0.50 -0.3
1,843,867 - Xcc-8004.1913.1 0.50 +0.9
1,843,867 - Xcc-8004.1913.1 0.50 -0.1
1,843,867 - Xcc-8004.1913.1 0.50 -0.2
1,843,867 - Xcc-8004.1913.1 0.50 -0.8
1,843,867 - Xcc-8004.1913.1 0.50 +0.6
1,843,867 - Xcc-8004.1913.1 0.50 +0.7
1,843,867 - Xcc-8004.1913.1 0.50 +0.6
1,843,867 - Xcc-8004.1913.1 0.50 -0.3
1,843,867 - Xcc-8004.1913.1 0.50 +0.2
1,843,867 - Xcc-8004.1913.1 0.50 +0.8
1,843,867 - Xcc-8004.1913.1 0.50 -0.9
1,843,867 - Xcc-8004.1913.1 0.50 -1.5
1,843,867 - Xcc-8004.1913.1 0.50 -0.7
1,843,867 - Xcc-8004.1913.1 0.50 -1.0
1,843,867 - Xcc-8004.1913.1 0.50 +0.9
1,843,867 - Xcc-8004.1913.1 0.50 -0.4
1,843,867 - Xcc-8004.1913.1 0.50 -1.3
1,843,867 - Xcc-8004.1913.1 0.50 +1.0
1,843,867 - Xcc-8004.1913.1 0.50 -0.6
1,843,867 - Xcc-8004.1913.1 0.50 -0.2
1,843,867 - Xcc-8004.1913.1 0.50 +0.7
1,843,867 - Xcc-8004.1913.1 0.50 +0.6
1,844,040 - Xcc-8004.1913.1 0.82 +0.4
1,844,040 - Xcc-8004.1913.1 0.82 +0.9
1,844,131 + -1.0
1,844,196 + -0.9
1,844,197 - -1.5
1,844,197 - -1.0
1,844,197 - +0.3
1,844,197 - +2.1
1,844,197 - -0.5
1,844,284 + +0.6
1,844,285 - -1.0
1,844,285 - -2.3
1,844,449 + Xcc-8004.1914.1 0.42 -0.6
1,844,459 - Xcc-8004.1914.1 0.44 -2.3
1,844,834 + +1.1
1,844,834 + -1.0
1,844,834 + +0.9
1,844,834 + -1.6
1,844,835 - +1.9
1,844,835 - -0.1
1,844,835 - -0.9
1,844,835 - +1.2
1,845,010 + Xcc-8004.1915.1 0.15 -1.1
1,845,010 + Xcc-8004.1915.1 0.15 +0.9
1,845,010 + Xcc-8004.1915.1 0.15 -1.0
1,845,010 + Xcc-8004.1915.1 0.15 +0.1
1,845,010 + Xcc-8004.1915.1 0.15 -1.4
1,845,010 + Xcc-8004.1915.1 0.15 -0.5
1,845,010 + Xcc-8004.1915.1 0.15 -1.8
1,845,010 + Xcc-8004.1915.1 0.15 -0.2
1,845,010 + Xcc-8004.1915.1 0.15 +0.6
1,845,010 + Xcc-8004.1915.1 0.15 +1.1
1,845,011 - Xcc-8004.1915.1 0.16 -0.9
1,845,011 - Xcc-8004.1915.1 0.16 +0.7
1,845,011 - Xcc-8004.1915.1 0.16 -0.7
1,845,011 - Xcc-8004.1915.1 0.16 -0.3
1,845,011 - Xcc-8004.1915.1 0.16 +0.0
1,845,011 - Xcc-8004.1915.1 0.16 -1.0
1,845,011 - Xcc-8004.1915.1 0.16 +0.7
1,845,011 - Xcc-8004.1915.1 0.16 -2.1
1,845,011 - Xcc-8004.1915.1 0.16 +1.0
1,845,011 - Xcc-8004.1915.1 0.16 -0.5
1,845,011 - Xcc-8004.1915.1 0.16 +0.8
1,845,011 - Xcc-8004.1915.1 0.16 -0.3
1,845,011 - Xcc-8004.1915.1 0.16 -1.3
1,845,011 - Xcc-8004.1915.1 0.16 -0.1
1,845,011 - Xcc-8004.1915.1 0.16 +0.7
1,845,014 + Xcc-8004.1915.1 0.16 +0.5
1,845,015 - Xcc-8004.1915.1 0.16 +0.3
1,845,015 - Xcc-8004.1915.1 0.16 +0.2
1,845,015 - Xcc-8004.1915.1 0.16 -1.3
1,845,034 + Xcc-8004.1915.1 0.17 +0.6
1,845,034 + Xcc-8004.1915.1 0.17 -0.6
1,845,034 + Xcc-8004.1915.1 0.17 +1.2
1,845,035 - Xcc-8004.1915.1 0.17 -1.0
1,845,035 - Xcc-8004.1915.1 0.17 -1.0
1,845,035 - Xcc-8004.1915.1 0.17 +0.2
1,845,035 - Xcc-8004.1915.1 0.17 -0.5
1,845,121 + Xcc-8004.1915.1 0.24 +0.6
1,845,121 + Xcc-8004.1915.1 0.24 -0.9
1,845,121 + Xcc-8004.1915.1 0.24 +0.9
1,845,121 + Xcc-8004.1915.1 0.24 +0.0
1,845,121 + Xcc-8004.1915.1 0.24 -1.7
1,845,121 + Xcc-8004.1915.1 0.24 -0.8
1,845,121 + Xcc-8004.1915.1 0.24 -2.0
1,845,121 + Xcc-8004.1915.1 0.24 +0.1
1,845,121 + Xcc-8004.1915.1 0.24 +0.5
1,845,121 + Xcc-8004.1915.1 0.24 +0.1
1,845,121 + Xcc-8004.1915.1 0.24 -1.0
1,845,121 + Xcc-8004.1915.1 0.24 -3.3
1,845,122 - Xcc-8004.1915.1 0.24 +0.5
1,845,122 - Xcc-8004.1915.1 0.24 -0.4
1,845,122 - Xcc-8004.1915.1 0.24 +0.2
1,845,122 - Xcc-8004.1915.1 0.24 -0.5
1,845,122 - Xcc-8004.1915.1 0.24 +1.1
1,845,122 - Xcc-8004.1915.1 0.24 -0.0
1,845,122 - Xcc-8004.1915.1 0.24 +0.6
1,845,122 - Xcc-8004.1915.1 0.24 +0.6
1,845,202 + Xcc-8004.1915.1 0.31 +1.2
1,845,202 + Xcc-8004.1915.1 0.31 -0.6
1,845,202 + Xcc-8004.1915.1 0.31 +0.2
1,845,203 - Xcc-8004.1915.1 0.31 +1.2
1,845,203 - Xcc-8004.1915.1 0.31 -0.0
1,845,203 - Xcc-8004.1915.1 0.31 +2.1
1,845,203 - Xcc-8004.1915.1 0.31 +0.1
1,845,203 - Xcc-8004.1915.1 0.31 +0.1
1,845,280 + Xcc-8004.1915.1 0.37 +1.6
1,845,281 - Xcc-8004.1915.1 0.37 -0.6
1,845,281 - Xcc-8004.1915.1 0.37 +0.1
1,845,311 - Xcc-8004.1915.1 0.40 -0.9
1,845,442 + Xcc-8004.1915.1 0.50 -0.4
1,845,442 + Xcc-8004.1915.1 0.50 +0.5
1,845,442 + Xcc-8004.1915.1 0.50 +0.6
1,845,442 + Xcc-8004.1915.1 0.50 -0.4
1,845,443 - Xcc-8004.1915.1 0.50 -0.0
1,845,443 - Xcc-8004.1915.1 0.50 +0.4
1,845,443 - Xcc-8004.1915.1 0.50 +1.0
1,845,443 - Xcc-8004.1915.1 0.50 -0.6
1,845,652 + Xcc-8004.1915.1 0.67 -1.3
1,845,653 - Xcc-8004.1915.1 0.67 +0.5

Or see this region's nucleotide sequence