Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.1891.1

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X
1,824,983	+				+0.9
1,824,983	+				-0.2
1,824,983	+				+0.5
1,824,983	+				-0.5
1,824,984	-				+0.4
1,824,984	-				-1.2
1,824,984	-				-0.0
1,824,984	-				+0.1
1,824,984	-				-0.8
1,824,984	-				-1.3
1,824,984	-				+1.4
1,824,984	-				-0.1
1,824,984	-				+1.1
1,825,092	+				-0.4
1,825,092	+				-0.5
1,825,092	+				+0.2
1,825,093	-				-0.6
1,825,093	-				+0.4
1,825,093	-				+0.5
1,825,174	+				-0.2
1,825,174	+				+0.9
1,825,174	+				-1.2
1,825,174	+				-0.3
1,825,174	+				-2.8
1,825,174	+				-0.7
1,825,175	-				-1.0
1,825,175	-				+0.8
1,825,175	-				-0.6
1,825,175	-				+1.5
1,825,175	-				-1.8
1,825,175	-				-1.4
1,825,175	-				+0.1
1,825,175	-				+0.5
1,825,175	-				-3.3
1,825,234	-		Xcc-8004.1890.1	0.16	+1.3
1,825,234	-		Xcc-8004.1890.1	0.16	-0.0
1,825,234	-		Xcc-8004.1890.1	0.16	-1.3
1,825,234	-		Xcc-8004.1890.1	0.16	+0.0
1,825,234	-		Xcc-8004.1890.1	0.16	+1.1
1,825,234	-		Xcc-8004.1890.1	0.16	-0.2
1,825,234	-		Xcc-8004.1890.1	0.16	+0.5
1,825,378	+		Xcc-8004.1890.1	0.33	-0.5
1,825,673	-		Xcc-8004.1890.1	0.66	-1.2
1,825,713	-		Xcc-8004.1890.1	0.71	+2.4
1,825,713	-		Xcc-8004.1890.1	0.71	-1.6
1,825,734	+		Xcc-8004.1890.1	0.73	-0.7
1,825,735	-		Xcc-8004.1890.1	0.74	-1.0
1,825,812	+		Xcc-8004.1890.1	0.82	-0.3
1,825,812	+		Xcc-8004.1890.1	0.82	-2.7
1,825,813	-		Xcc-8004.1890.1	0.82	-0.5
1,825,813	-		Xcc-8004.1890.1	0.82	-0.0
1,825,813	-		Xcc-8004.1890.1	0.82	+0.4
1,825,813	-		Xcc-8004.1890.1	0.82	+1.0
1,825,813	-		Xcc-8004.1890.1	0.82	-1.0
1,825,813	-		Xcc-8004.1890.1	0.82	-0.6
1,826,083	-		Xcc-8004.1891.1	0.44	-0.7
1,826,104	-		Xcc-8004.1891.1	0.52	-0.4
1,826,104	-		Xcc-8004.1891.1	0.52	-0.7