Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.1779.1

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.1778.1 and Xcc-8004.1779.1 are separated by 142 nucleotidesXcc-8004.1779.1 and Xcc-8004.1780.1 are separated by 2 nucleotidesXcc-8004.1780.1 and Xcc-8004.1781.1 are separated by 1 nucleotides Xcc-8004.1778.1: Xcc-8004.1778.1 - Protein involved in catabolism of external DNA, at 1,713,671 to 1,714,579 Xcc-8004.1778.1 Xcc-8004.1779.1: Xcc-8004.1779.1 - Two-component response regulator CreB, at 1,714,722 to 1,715,501 Xcc-8004.1779.1 Xcc-8004.1780.1: Xcc-8004.1780.1 - hypothetical protein, at 1,715,504 to 1,715,863 Xcc-8004.1780.1 Xcc-8004.1781.1: Xcc-8004.1781.1 - Two-component response regulator CreC, at 1,715,865 to 1,717,298 Xcc-8004.1781.1 Position (kb) 1714 1715 1716Strain fitness (log2 ratio) -3 -2 -1 0 1at 1714.017 kb on + strand, within Xcc-8004.1778.1at 1714.017 kb on + strand, within Xcc-8004.1778.1at 1714.017 kb on + strand, within Xcc-8004.1778.1at 1714.017 kb on + strand, within Xcc-8004.1778.1at 1714.018 kb on - strand, within Xcc-8004.1778.1at 1714.018 kb on - strand, within Xcc-8004.1778.1at 1714.018 kb on - strand, within Xcc-8004.1778.1at 1714.018 kb on - strand, within Xcc-8004.1778.1at 1714.018 kb on - strand, within Xcc-8004.1778.1at 1714.018 kb on - strand, within Xcc-8004.1778.1at 1714.099 kb on - strand, within Xcc-8004.1778.1at 1714.099 kb on - strand, within Xcc-8004.1778.1at 1714.099 kb on - strand, within Xcc-8004.1778.1at 1714.341 kb on + strand, within Xcc-8004.1778.1at 1714.342 kb on - strand, within Xcc-8004.1778.1at 1714.573 kb on - strandat 1714.590 kb on + strandat 1714.590 kb on + strandat 1714.590 kb on + strandat 1714.590 kb on + strandat 1714.590 kb on + strandat 1714.590 kb on + strandat 1714.591 kb on - strandat 1714.591 kb on - strandat 1714.591 kb on - strandat 1714.636 kb on + strandat 1714.656 kb on + strandat 1714.657 kb on - strandat 1714.657 kb on - strandat 1714.770 kb on + strandat 1714.770 kb on + strandat 1714.771 kb on - strandat 1714.771 kb on - strandat 1714.794 kb on - strandat 1714.873 kb on - strand, within Xcc-8004.1779.1at 1714.873 kb on - strand, within Xcc-8004.1779.1at 1714.873 kb on - strand, within Xcc-8004.1779.1at 1714.893 kb on + strand, within Xcc-8004.1779.1at 1714.894 kb on - strand, within Xcc-8004.1779.1at 1714.894 kb on - strand, within Xcc-8004.1779.1at 1714.894 kb on - strand, within Xcc-8004.1779.1at 1714.894 kb on - strand, within Xcc-8004.1779.1at 1714.894 kb on - strand, within Xcc-8004.1779.1at 1715.109 kb on + strand, within Xcc-8004.1779.1at 1715.110 kb on - strand, within Xcc-8004.1779.1at 1715.257 kb on - strand, within Xcc-8004.1779.1at 1715.293 kb on - strand, within Xcc-8004.1779.1at 1715.409 kb on - strand, within Xcc-8004.1779.1at 1716.255 kb on + strand, within Xcc-8004.1781.1at 1716.327 kb on + strand, within Xcc-8004.1781.1at 1716.327 kb on + strand, within Xcc-8004.1781.1at 1716.327 kb on + strand, within Xcc-8004.1781.1at 1716.328 kb on - strand, within Xcc-8004.1781.1at 1716.328 kb on - strand, within Xcc-8004.1781.1at 1716.328 kb on - strand, within Xcc-8004.1781.1at 1716.328 kb on - strand, within Xcc-8004.1781.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X
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1,714,017 + Xcc-8004.1778.1 0.38 +0.2
1,714,017 + Xcc-8004.1778.1 0.38 +0.7
1,714,017 + Xcc-8004.1778.1 0.38 -0.3
1,714,017 + Xcc-8004.1778.1 0.38 +0.3
1,714,018 - Xcc-8004.1778.1 0.38 -0.6
1,714,018 - Xcc-8004.1778.1 0.38 +1.0
1,714,018 - Xcc-8004.1778.1 0.38 -0.5
1,714,018 - Xcc-8004.1778.1 0.38 -1.3
1,714,018 - Xcc-8004.1778.1 0.38 +0.7
1,714,018 - Xcc-8004.1778.1 0.38 -1.1
1,714,099 - Xcc-8004.1778.1 0.47 -0.7
1,714,099 - Xcc-8004.1778.1 0.47 -1.0
1,714,099 - Xcc-8004.1778.1 0.47 +0.4
1,714,341 + Xcc-8004.1778.1 0.74 +0.1
1,714,342 - Xcc-8004.1778.1 0.74 -0.7
1,714,573 - +0.0
1,714,590 + -0.2
1,714,590 + +1.2
1,714,590 + -0.4
1,714,590 + +0.8
1,714,590 + +0.1
1,714,590 + -1.1
1,714,591 - -1.5
1,714,591 - +0.8
1,714,591 - -0.7
1,714,636 + -1.0
1,714,656 + +0.7
1,714,657 - +0.4
1,714,657 - -1.4
1,714,770 + +1.5
1,714,770 + -1.4
1,714,771 - -2.4
1,714,771 - -0.7
1,714,794 - -1.3
1,714,873 - Xcc-8004.1779.1 0.19 -1.4
1,714,873 - Xcc-8004.1779.1 0.19 -0.9
1,714,873 - Xcc-8004.1779.1 0.19 -1.2
1,714,893 + Xcc-8004.1779.1 0.22 -0.8
1,714,894 - Xcc-8004.1779.1 0.22 +0.5
1,714,894 - Xcc-8004.1779.1 0.22 -3.5
1,714,894 - Xcc-8004.1779.1 0.22 -0.6
1,714,894 - Xcc-8004.1779.1 0.22 -1.7
1,714,894 - Xcc-8004.1779.1 0.22 -0.5
1,715,109 + Xcc-8004.1779.1 0.50 -2.7
1,715,110 - Xcc-8004.1779.1 0.50 +0.4
1,715,257 - Xcc-8004.1779.1 0.69 +0.0
1,715,293 - Xcc-8004.1779.1 0.73 -1.2
1,715,409 - Xcc-8004.1779.1 0.88 -0.1
1,716,255 + Xcc-8004.1781.1 0.27 -0.0
1,716,327 + Xcc-8004.1781.1 0.32 +0.2
1,716,327 + Xcc-8004.1781.1 0.32 +0.1
1,716,327 + Xcc-8004.1781.1 0.32 -1.0
1,716,328 - Xcc-8004.1781.1 0.32 +0.4
1,716,328 - Xcc-8004.1781.1 0.32 -0.4
1,716,328 - Xcc-8004.1781.1 0.32 -0.3
1,716,328 - Xcc-8004.1781.1 0.32 +1.7

Or see this region's nucleotide sequence