Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.1767.1 and Xcc-8004.1768.1 are separated by 299 nucleotides Xcc-8004.1768.1 and Xcc-8004.1769.1 are separated by 14 nucleotides Xcc-8004.1769.1 and Xcc-8004.1770.1 overlap by 17 nucleotides
Xcc-8004.1767.1: Xcc-8004.1767.1 - cardiolipin synthase, at 1,697,847 to 1,699,409
Xcc-8004.1767.1
Xcc-8004.1768.1: Xcc-8004.1768.1 - Chemotaxis response regulator protein-glutamate methylesterase CheB (EC 3.1.1.61), at 1,699,709 to 1,700,818
Xcc-8004.1768.1
Xcc-8004.1769.1: Xcc-8004.1769.1 - Chemotaxis protein methyltransferase CheR (EC 2.1.1.80), at 1,700,833 to 1,701,660
Xcc-8004.1769.1
Xcc-8004.1770.1: Xcc-8004.1770.1 - hypothetical protein, at 1,701,644 to 1,702,927
Xcc-8004.1770.1
Position (kb) 1699
1700
1701 Strain fitness (log2 ratio) -1
0
1 at 1698.922 kb on + strand, within Xcc-8004.1767.1 at 1699.094 kb on + strand, within Xcc-8004.1767.1 at 1699.094 kb on + strand, within Xcc-8004.1767.1 at 1699.094 kb on + strand, within Xcc-8004.1767.1 at 1699.095 kb on - strand, within Xcc-8004.1767.1 at 1699.190 kb on - strand, within Xcc-8004.1767.1 at 1699.190 kb on - strand, within Xcc-8004.1767.1 at 1699.230 kb on + strand, within Xcc-8004.1767.1 at 1699.230 kb on + strand, within Xcc-8004.1767.1 at 1699.407 kb on + strand at 1699.483 kb on + strand at 1699.494 kb on - strand at 1699.494 kb on - strand at 1699.529 kb on - strand at 1699.998 kb on - strand, within Xcc-8004.1768.1 at 1700.010 kb on + strand, within Xcc-8004.1768.1 at 1700.841 kb on + strand at 1700.984 kb on + strand, within Xcc-8004.1769.1 at 1701.111 kb on - strand, within Xcc-8004.1769.1 at 1701.135 kb on - strand, within Xcc-8004.1769.1 at 1701.146 kb on + strand, within Xcc-8004.1769.1 at 1701.146 kb on + strand, within Xcc-8004.1769.1 at 1701.146 kb on + strand, within Xcc-8004.1769.1 at 1701.147 kb on - strand, within Xcc-8004.1769.1 at 1701.488 kb on + strand, within Xcc-8004.1769.1 at 1701.488 kb on + strand, within Xcc-8004.1769.1 at 1701.488 kb on + strand, within Xcc-8004.1769.1 at 1701.759 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X remove 1,698,922 + Xcc-8004.1767.1 0.69 +0.3 1,699,094 + Xcc-8004.1767.1 0.80 +0.1 1,699,094 + Xcc-8004.1767.1 0.80 +0.2 1,699,094 + Xcc-8004.1767.1 0.80 +1.5 1,699,095 - Xcc-8004.1767.1 0.80 +0.5 1,699,190 - Xcc-8004.1767.1 0.86 +0.2 1,699,190 - Xcc-8004.1767.1 0.86 +0.1 1,699,230 + Xcc-8004.1767.1 0.88 +0.2 1,699,230 + Xcc-8004.1767.1 0.88 +0.1 1,699,407 + -0.1 1,699,483 + -0.9 1,699,494 - -0.3 1,699,494 - +0.8 1,699,529 - +0.5 1,699,998 - Xcc-8004.1768.1 0.26 -1.2 1,700,010 + Xcc-8004.1768.1 0.27 +0.4 1,700,841 + +1.2 1,700,984 + Xcc-8004.1769.1 0.18 +1.2 1,701,111 - Xcc-8004.1769.1 0.34 -0.6 1,701,135 - Xcc-8004.1769.1 0.36 +1.1 1,701,146 + Xcc-8004.1769.1 0.38 -0.1 1,701,146 + Xcc-8004.1769.1 0.38 +0.5 1,701,146 + Xcc-8004.1769.1 0.38 +0.5 1,701,147 - Xcc-8004.1769.1 0.38 -1.0 1,701,488 + Xcc-8004.1769.1 0.79 -1.1 1,701,488 + Xcc-8004.1769.1 0.79 +0.8 1,701,488 + Xcc-8004.1769.1 0.79 -0.1 1,701,759 + -0.3
Or see this region's nucleotide sequence