Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.1764.1

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.1762.1 and Xcc-8004.1763.1 are separated by 103 nucleotidesXcc-8004.1763.1 and Xcc-8004.1764.1 are separated by 84 nucleotidesXcc-8004.1764.1 and Xcc-8004.1765.1 are separated by 165 nucleotides Xcc-8004.1762.1: Xcc-8004.1762.1 - Endonuclease V (EC 3.1.21.7), at 1,692,181 to 1,692,891 Xcc-8004.1762.1 Xcc-8004.1763.1: Xcc-8004.1763.1 - Phosphoglycerate mutase (EC 5.4.2.1), at 1,692,995 to 1,693,744 Xcc-8004.1763.1 Xcc-8004.1764.1: Xcc-8004.1764.1 - FIG01209971: hypothetical protein, at 1,693,829 to 1,694,209 Xcc-8004.1764.1 Xcc-8004.1765.1: Xcc-8004.1765.1 - Metallopeptidase, at 1,694,375 to 1,696,474 Xcc-8004.1765.1 Position (kb) 1693 1694 1695Strain fitness (log2 ratio) -2 -1 0 1 2at 1692.993 kb on + strandat 1692.993 kb on + strandat 1693.011 kb on + strandat 1693.011 kb on + strandat 1693.157 kb on + strand, within Xcc-8004.1763.1at 1693.158 kb on - strand, within Xcc-8004.1763.1at 1693.266 kb on - strand, within Xcc-8004.1763.1at 1693.409 kb on + strand, within Xcc-8004.1763.1at 1693.410 kb on - strand, within Xcc-8004.1763.1at 1693.565 kb on + strand, within Xcc-8004.1763.1at 1693.565 kb on + strand, within Xcc-8004.1763.1at 1693.565 kb on + strand, within Xcc-8004.1763.1at 1693.566 kb on - strand, within Xcc-8004.1763.1at 1693.566 kb on - strand, within Xcc-8004.1763.1at 1693.572 kb on - strand, within Xcc-8004.1763.1at 1693.572 kb on - strand, within Xcc-8004.1763.1at 1693.671 kb on - strandat 1693.742 kb on + strandat 1693.742 kb on + strandat 1693.743 kb on - strandat 1693.743 kb on - strandat 1693.743 kb on - strandat 1693.743 kb on - strandat 1693.743 kb on - strandat 1693.906 kb on + strand, within Xcc-8004.1764.1at 1693.907 kb on - strand, within Xcc-8004.1764.1at 1693.931 kb on + strand, within Xcc-8004.1764.1at 1693.931 kb on + strand, within Xcc-8004.1764.1at 1693.931 kb on + strand, within Xcc-8004.1764.1at 1693.932 kb on - strand, within Xcc-8004.1764.1at 1693.943 kb on + strand, within Xcc-8004.1764.1at 1693.943 kb on + strand, within Xcc-8004.1764.1at 1694.175 kb on - strandat 1694.175 kb on - strandat 1694.175 kb on - strandat 1694.175 kb on - strandat 1694.175 kb on - strandat 1694.195 kb on + strandat 1694.207 kb on + strandat 1694.208 kb on - strandat 1694.208 kb on - strandat 1694.323 kb on - strandat 1694.326 kb on + strandat 1694.327 kb on - strandat 1694.327 kb on - strandat 1694.823 kb on + strand, within Xcc-8004.1765.1at 1694.882 kb on + strand, within Xcc-8004.1765.1at 1694.882 kb on + strand, within Xcc-8004.1765.1at 1694.883 kb on - strand, within Xcc-8004.1765.1at 1694.883 kb on - strand, within Xcc-8004.1765.1at 1694.883 kb on - strand, within Xcc-8004.1765.1at 1694.883 kb on - strand, within Xcc-8004.1765.1at 1694.883 kb on - strand, within Xcc-8004.1765.1at 1694.930 kb on + strand, within Xcc-8004.1765.1at 1694.957 kb on + strand, within Xcc-8004.1765.1at 1694.996 kb on + strand, within Xcc-8004.1765.1at 1694.997 kb on - strand, within Xcc-8004.1765.1at 1694.999 kb on + strand, within Xcc-8004.1765.1at 1694.999 kb on + strand, within Xcc-8004.1765.1at 1695.000 kb on - strand, within Xcc-8004.1765.1at 1695.035 kb on + strand, within Xcc-8004.1765.1at 1695.035 kb on + strand, within Xcc-8004.1765.1at 1695.035 kb on + strand, within Xcc-8004.1765.1at 1695.035 kb on + strand, within Xcc-8004.1765.1at 1695.035 kb on + strand, within Xcc-8004.1765.1at 1695.035 kb on + strand, within Xcc-8004.1765.1at 1695.036 kb on - strand, within Xcc-8004.1765.1at 1695.036 kb on - strand, within Xcc-8004.1765.1at 1695.044 kb on + strand, within Xcc-8004.1765.1at 1695.044 kb on + strand, within Xcc-8004.1765.1at 1695.044 kb on + strand, within Xcc-8004.1765.1at 1695.045 kb on - strand, within Xcc-8004.1765.1at 1695.045 kb on - strand, within Xcc-8004.1765.1at 1695.045 kb on - strand, within Xcc-8004.1765.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X
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1,692,993 + -1.0
1,692,993 + -2.3
1,693,011 + +1.5
1,693,011 + -1.2
1,693,157 + Xcc-8004.1763.1 0.22 +2.5
1,693,158 - Xcc-8004.1763.1 0.22 -0.5
1,693,266 - Xcc-8004.1763.1 0.36 +0.5
1,693,409 + Xcc-8004.1763.1 0.55 +0.9
1,693,410 - Xcc-8004.1763.1 0.55 +2.5
1,693,565 + Xcc-8004.1763.1 0.76 -0.2
1,693,565 + Xcc-8004.1763.1 0.76 -0.7
1,693,565 + Xcc-8004.1763.1 0.76 +0.9
1,693,566 - Xcc-8004.1763.1 0.76 +0.9
1,693,566 - Xcc-8004.1763.1 0.76 -1.1
1,693,572 - Xcc-8004.1763.1 0.77 +2.5
1,693,572 - Xcc-8004.1763.1 0.77 +2.5
1,693,671 - -0.1
1,693,742 + +1.0
1,693,742 + +0.2
1,693,743 - +0.6
1,693,743 - -2.1
1,693,743 - +1.3
1,693,743 - -0.5
1,693,743 - -1.1
1,693,906 + Xcc-8004.1764.1 0.20 -0.2
1,693,907 - Xcc-8004.1764.1 0.20 -1.0
1,693,931 + Xcc-8004.1764.1 0.27 -1.8
1,693,931 + Xcc-8004.1764.1 0.27 -0.1
1,693,931 + Xcc-8004.1764.1 0.27 -0.4
1,693,932 - Xcc-8004.1764.1 0.27 -2.2
1,693,943 + Xcc-8004.1764.1 0.30 -0.2
1,693,943 + Xcc-8004.1764.1 0.30 -0.6
1,694,175 - -0.8
1,694,175 - +0.1
1,694,175 - -0.5
1,694,175 - +0.2
1,694,175 - +1.5
1,694,195 + -1.6
1,694,207 + -0.6
1,694,208 - +1.5
1,694,208 - +0.5
1,694,323 - +1.2
1,694,326 + +1.7
1,694,327 - +1.5
1,694,327 - +0.3
1,694,823 + Xcc-8004.1765.1 0.21 +0.5
1,694,882 + Xcc-8004.1765.1 0.24 +0.6
1,694,882 + Xcc-8004.1765.1 0.24 +0.2
1,694,883 - Xcc-8004.1765.1 0.24 +1.3
1,694,883 - Xcc-8004.1765.1 0.24 -0.3
1,694,883 - Xcc-8004.1765.1 0.24 -0.6
1,694,883 - Xcc-8004.1765.1 0.24 -0.3
1,694,883 - Xcc-8004.1765.1 0.24 -2.1
1,694,930 + Xcc-8004.1765.1 0.26 +1.3
1,694,957 + Xcc-8004.1765.1 0.28 -0.8
1,694,996 + Xcc-8004.1765.1 0.30 +1.1
1,694,997 - Xcc-8004.1765.1 0.30 +0.7
1,694,999 + Xcc-8004.1765.1 0.30 -0.2
1,694,999 + Xcc-8004.1765.1 0.30 +0.8
1,695,000 - Xcc-8004.1765.1 0.30 -1.4
1,695,035 + Xcc-8004.1765.1 0.31 +1.9
1,695,035 + Xcc-8004.1765.1 0.31 -1.0
1,695,035 + Xcc-8004.1765.1 0.31 +0.1
1,695,035 + Xcc-8004.1765.1 0.31 -0.1
1,695,035 + Xcc-8004.1765.1 0.31 +0.2
1,695,035 + Xcc-8004.1765.1 0.31 -1.2
1,695,036 - Xcc-8004.1765.1 0.31 -0.5
1,695,036 - Xcc-8004.1765.1 0.31 +0.3
1,695,044 + Xcc-8004.1765.1 0.32 -0.5
1,695,044 + Xcc-8004.1765.1 0.32 +0.3
1,695,044 + Xcc-8004.1765.1 0.32 +1.5
1,695,045 - Xcc-8004.1765.1 0.32 +0.2
1,695,045 - Xcc-8004.1765.1 0.32 -0.5
1,695,045 - Xcc-8004.1765.1 0.32 -0.7

Or see this region's nucleotide sequence