Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.1633.1

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.1632.1 and Xcc-8004.1633.1 are separated by 10 nucleotidesXcc-8004.1633.1 and Xcc-8004.1634.1 are separated by 37 nucleotides Xcc-8004.1632.1: Xcc-8004.1632.1 - Peptide transport system permease protein SapC, at 1,572,855 to 1,573,796 Xcc-8004.1632.1 Xcc-8004.1633.1: Xcc-8004.1633.1 - Pass1-related protein, at 1,573,807 to 1,574,838 Xcc-8004.1633.1 Xcc-8004.1634.1: Xcc-8004.1634.1 - Tryptophan halogenase, at 1,574,876 to 1,576,372 Xcc-8004.1634.1 Position (kb) 1573 1574 1575Strain fitness (log2 ratio) -2 -1 0 1 2at 1573.022 kb on - strand, within Xcc-8004.1632.1at 1573.022 kb on - strand, within Xcc-8004.1632.1at 1573.047 kb on + strand, within Xcc-8004.1632.1at 1573.212 kb on + strand, within Xcc-8004.1632.1at 1573.212 kb on + strand, within Xcc-8004.1632.1at 1573.212 kb on + strand, within Xcc-8004.1632.1at 1573.287 kb on + strand, within Xcc-8004.1632.1at 1573.287 kb on + strand, within Xcc-8004.1632.1at 1573.287 kb on + strand, within Xcc-8004.1632.1at 1573.288 kb on - strand, within Xcc-8004.1632.1at 1573.360 kb on + strand, within Xcc-8004.1632.1at 1573.448 kb on + strand, within Xcc-8004.1632.1at 1573.456 kb on - strand, within Xcc-8004.1632.1at 1573.611 kb on + strand, within Xcc-8004.1632.1at 1573.611 kb on + strand, within Xcc-8004.1632.1at 1573.611 kb on + strand, within Xcc-8004.1632.1at 1573.611 kb on + strand, within Xcc-8004.1632.1at 1573.612 kb on - strand, within Xcc-8004.1632.1at 1574.017 kb on + strand, within Xcc-8004.1633.1at 1574.017 kb on + strand, within Xcc-8004.1633.1at 1574.018 kb on - strand, within Xcc-8004.1633.1at 1574.023 kb on + strand, within Xcc-8004.1633.1at 1574.023 kb on + strand, within Xcc-8004.1633.1at 1574.024 kb on - strand, within Xcc-8004.1633.1at 1574.162 kb on - strand, within Xcc-8004.1633.1at 1574.162 kb on - strand, within Xcc-8004.1633.1at 1574.165 kb on - strand, within Xcc-8004.1633.1at 1574.191 kb on + strand, within Xcc-8004.1633.1at 1574.381 kb on - strand, within Xcc-8004.1633.1at 1574.588 kb on - strand, within Xcc-8004.1633.1at 1574.708 kb on - strand, within Xcc-8004.1633.1at 1574.708 kb on - strand, within Xcc-8004.1633.1at 1574.710 kb on + strand, within Xcc-8004.1633.1at 1574.711 kb on - strand, within Xcc-8004.1633.1at 1574.711 kb on - strand, within Xcc-8004.1633.1at 1574.714 kb on + strand, within Xcc-8004.1633.1at 1574.714 kb on + strand, within Xcc-8004.1633.1at 1575.155 kb on + strand, within Xcc-8004.1634.1at 1575.156 kb on - strand, within Xcc-8004.1634.1at 1575.261 kb on - strand, within Xcc-8004.1634.1at 1575.326 kb on + strand, within Xcc-8004.1634.1at 1575.326 kb on + strand, within Xcc-8004.1634.1at 1575.326 kb on + strand, within Xcc-8004.1634.1at 1575.326 kb on + strand, within Xcc-8004.1634.1at 1575.327 kb on - strand, within Xcc-8004.1634.1at 1575.327 kb on - strand, within Xcc-8004.1634.1at 1575.327 kb on - strand, within Xcc-8004.1634.1at 1575.327 kb on - strand, within Xcc-8004.1634.1at 1575.327 kb on - strand, within Xcc-8004.1634.1at 1575.327 kb on - strand, within Xcc-8004.1634.1at 1575.332 kb on + strand, within Xcc-8004.1634.1at 1575.555 kb on - strand, within Xcc-8004.1634.1at 1575.555 kb on - strand, within Xcc-8004.1634.1at 1575.633 kb on - strand, within Xcc-8004.1634.1at 1575.634 kb on + strand, within Xcc-8004.1634.1at 1575.635 kb on - strand, within Xcc-8004.1634.1at 1575.635 kb on - strand, within Xcc-8004.1634.1at 1575.635 kb on - strand, within Xcc-8004.1634.1at 1575.710 kb on + strand, within Xcc-8004.1634.1at 1575.711 kb on - strand, within Xcc-8004.1634.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X
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1,573,022 - Xcc-8004.1632.1 0.18 +1.2
1,573,022 - Xcc-8004.1632.1 0.18 -0.6
1,573,047 + Xcc-8004.1632.1 0.20 +0.7
1,573,212 + Xcc-8004.1632.1 0.38 +1.0
1,573,212 + Xcc-8004.1632.1 0.38 +0.2
1,573,212 + Xcc-8004.1632.1 0.38 +0.2
1,573,287 + Xcc-8004.1632.1 0.46 -1.0
1,573,287 + Xcc-8004.1632.1 0.46 -0.5
1,573,287 + Xcc-8004.1632.1 0.46 +0.6
1,573,288 - Xcc-8004.1632.1 0.46 +0.5
1,573,360 + Xcc-8004.1632.1 0.54 +0.5
1,573,448 + Xcc-8004.1632.1 0.63 -1.1
1,573,456 - Xcc-8004.1632.1 0.64 +0.2
1,573,611 + Xcc-8004.1632.1 0.80 -0.8
1,573,611 + Xcc-8004.1632.1 0.80 -0.3
1,573,611 + Xcc-8004.1632.1 0.80 +0.9
1,573,611 + Xcc-8004.1632.1 0.80 -0.1
1,573,612 - Xcc-8004.1632.1 0.80 -0.6
1,574,017 + Xcc-8004.1633.1 0.20 -0.9
1,574,017 + Xcc-8004.1633.1 0.20 -1.1
1,574,018 - Xcc-8004.1633.1 0.20 +0.6
1,574,023 + Xcc-8004.1633.1 0.21 +0.8
1,574,023 + Xcc-8004.1633.1 0.21 +0.1
1,574,024 - Xcc-8004.1633.1 0.21 -0.3
1,574,162 - Xcc-8004.1633.1 0.34 -1.9
1,574,162 - Xcc-8004.1633.1 0.34 +1.5
1,574,165 - Xcc-8004.1633.1 0.35 +1.3
1,574,191 + Xcc-8004.1633.1 0.37 +0.4
1,574,381 - Xcc-8004.1633.1 0.56 +1.1
1,574,588 - Xcc-8004.1633.1 0.76 -0.3
1,574,708 - Xcc-8004.1633.1 0.87 +0.1
1,574,708 - Xcc-8004.1633.1 0.87 -0.4
1,574,710 + Xcc-8004.1633.1 0.88 +0.6
1,574,711 - Xcc-8004.1633.1 0.88 +0.9
1,574,711 - Xcc-8004.1633.1 0.88 +1.8
1,574,714 + Xcc-8004.1633.1 0.88 -1.4
1,574,714 + Xcc-8004.1633.1 0.88 +0.3
1,575,155 + Xcc-8004.1634.1 0.19 +0.4
1,575,156 - Xcc-8004.1634.1 0.19 -0.4
1,575,261 - Xcc-8004.1634.1 0.26 +1.5
1,575,326 + Xcc-8004.1634.1 0.30 -0.5
1,575,326 + Xcc-8004.1634.1 0.30 +1.2
1,575,326 + Xcc-8004.1634.1 0.30 +0.1
1,575,326 + Xcc-8004.1634.1 0.30 +0.3
1,575,327 - Xcc-8004.1634.1 0.30 +0.0
1,575,327 - Xcc-8004.1634.1 0.30 -0.4
1,575,327 - Xcc-8004.1634.1 0.30 -0.1
1,575,327 - Xcc-8004.1634.1 0.30 +0.1
1,575,327 - Xcc-8004.1634.1 0.30 +1.2
1,575,327 - Xcc-8004.1634.1 0.30 -1.4
1,575,332 + Xcc-8004.1634.1 0.30 +0.2
1,575,555 - Xcc-8004.1634.1 0.45 -0.0
1,575,555 - Xcc-8004.1634.1 0.45 +0.8
1,575,633 - Xcc-8004.1634.1 0.51 -0.8
1,575,634 + Xcc-8004.1634.1 0.51 +0.2
1,575,635 - Xcc-8004.1634.1 0.51 +0.3
1,575,635 - Xcc-8004.1634.1 0.51 +1.1
1,575,635 - Xcc-8004.1634.1 0.51 +0.0
1,575,710 + Xcc-8004.1634.1 0.56 +1.2
1,575,711 - Xcc-8004.1634.1 0.56 +1.0

Or see this region's nucleotide sequence