Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.1565.1 and Xcc-8004.1566.1 are separated by 3 nucleotides Xcc-8004.1566.1 and Xcc-8004.1567.1 are separated by 207 nucleotides
Xcc-8004.1565.1: Xcc-8004.1565.1 - Putative stomatin/prohibitin-family membrane protease subunit YbbK, at 1,503,714 to 1,504,679
Xcc-8004.1565.1
Xcc-8004.1566.1: Xcc-8004.1566.1 - Putative activity regulator of membrane protease YbbK, at 1,504,683 to 1,505,117
Xcc-8004.1566.1
Xcc-8004.1567.1: Xcc-8004.1567.1 - Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10), at 1,505,325 to 1,506,434
Xcc-8004.1567.1
Position (kb) 1504
1505
1506 Strain fitness (log2 ratio) -1
0
1 at 1503.831 kb on + strand, within Xcc-8004.1565.1 at 1503.832 kb on - strand, within Xcc-8004.1565.1 at 1503.879 kb on + strand, within Xcc-8004.1565.1 at 1503.879 kb on + strand, within Xcc-8004.1565.1 at 1504.068 kb on - strand, within Xcc-8004.1565.1 at 1504.480 kb on - strand, within Xcc-8004.1565.1 at 1504.480 kb on - strand, within Xcc-8004.1565.1 at 1504.480 kb on - strand, within Xcc-8004.1565.1 at 1504.480 kb on - strand, within Xcc-8004.1565.1 at 1504.480 kb on - strand, within Xcc-8004.1565.1 at 1504.497 kb on + strand, within Xcc-8004.1565.1 at 1504.658 kb on - strand at 1504.658 kb on - strand at 1504.658 kb on - strand at 1504.881 kb on + strand, within Xcc-8004.1566.1 at 1504.881 kb on + strand, within Xcc-8004.1566.1 at 1504.882 kb on - strand, within Xcc-8004.1566.1 at 1505.155 kb on + strand at 1505.526 kb on + strand, within Xcc-8004.1567.1 at 1505.577 kb on + strand, within Xcc-8004.1567.1 at 1505.577 kb on + strand, within Xcc-8004.1567.1 at 1505.578 kb on - strand, within Xcc-8004.1567.1 at 1505.578 kb on - strand, within Xcc-8004.1567.1 at 1505.578 kb on - strand, within Xcc-8004.1567.1 at 1505.578 kb on - strand, within Xcc-8004.1567.1 at 1505.578 kb on - strand, within Xcc-8004.1567.1 at 1505.628 kb on + strand, within Xcc-8004.1567.1 at 1505.628 kb on + strand, within Xcc-8004.1567.1 at 1505.629 kb on - strand, within Xcc-8004.1567.1 at 1505.629 kb on - strand, within Xcc-8004.1567.1 at 1505.904 kb on + strand, within Xcc-8004.1567.1 at 1506.078 kb on + strand, within Xcc-8004.1567.1
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X remove 1,503,831 + Xcc-8004.1565.1 0.12 +0.8 1,503,832 - Xcc-8004.1565.1 0.12 -0.6 1,503,879 + Xcc-8004.1565.1 0.17 +0.5 1,503,879 + Xcc-8004.1565.1 0.17 -1.5 1,504,068 - Xcc-8004.1565.1 0.37 -1.1 1,504,480 - Xcc-8004.1565.1 0.79 -1.0 1,504,480 - Xcc-8004.1565.1 0.79 -1.3 1,504,480 - Xcc-8004.1565.1 0.79 -0.8 1,504,480 - Xcc-8004.1565.1 0.79 +1.0 1,504,480 - Xcc-8004.1565.1 0.79 -0.9 1,504,497 + Xcc-8004.1565.1 0.81 +1.2 1,504,658 - +0.7 1,504,658 - +0.5 1,504,658 - +1.0 1,504,881 + Xcc-8004.1566.1 0.46 -0.0 1,504,881 + Xcc-8004.1566.1 0.46 +0.1 1,504,882 - Xcc-8004.1566.1 0.46 -0.6 1,505,155 + +0.8 1,505,526 + Xcc-8004.1567.1 0.18 -1.0 1,505,577 + Xcc-8004.1567.1 0.23 -0.7 1,505,577 + Xcc-8004.1567.1 0.23 -1.4 1,505,578 - Xcc-8004.1567.1 0.23 -0.1 1,505,578 - Xcc-8004.1567.1 0.23 -1.0 1,505,578 - Xcc-8004.1567.1 0.23 +0.1 1,505,578 - Xcc-8004.1567.1 0.23 +0.8 1,505,578 - Xcc-8004.1567.1 0.23 -1.2 1,505,628 + Xcc-8004.1567.1 0.27 -0.1 1,505,628 + Xcc-8004.1567.1 0.27 -0.9 1,505,629 - Xcc-8004.1567.1 0.27 -0.6 1,505,629 - Xcc-8004.1567.1 0.27 -1.2 1,505,904 + Xcc-8004.1567.1 0.52 -0.1 1,506,078 + Xcc-8004.1567.1 0.68 -0.9
Or see this region's nucleotide sequence