Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.1521.1

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X
1,458,451	+		Xcc-8004.1519.1	0.86	-0.3
1,458,452	-		Xcc-8004.1519.1	0.86	-1.4
1,458,452	-		Xcc-8004.1519.1	0.86	+0.2
1,458,452	-		Xcc-8004.1519.1	0.86	-0.8
1,458,550	-				-0.8
1,458,550	-				-1.0
1,458,550	-				-0.7
1,458,624	-				-0.6
1,458,652	-				-0.1
1,458,824	+				+0.8
1,458,824	+				-0.4
1,458,825	-				+1.3
1,458,825	-				-0.2
1,458,825	-				+0.9
1,458,918	+				+0.2
1,458,918	+				+0.0
1,459,100	+		Xcc-8004.1520.1	0.31	-1.1
1,459,100	+		Xcc-8004.1520.1	0.31	-0.8
1,459,101	-		Xcc-8004.1520.1	0.32	-0.8
1,459,101	-		Xcc-8004.1520.1	0.32	+1.1
1,459,160	+		Xcc-8004.1520.1	0.50	+0.9
1,459,160	+		Xcc-8004.1520.1	0.50	-0.0
1,459,161	-		Xcc-8004.1520.1	0.50	-0.3
1,459,161	-		Xcc-8004.1520.1	0.50	+0.4
1,459,205	+		Xcc-8004.1520.1	0.64	-0.6
1,459,205	+		Xcc-8004.1520.1	0.64	+0.2
1,459,205	+		Xcc-8004.1520.1	0.64	-1.1
1,459,206	-		Xcc-8004.1520.1	0.64	-1.1
1,459,319	+				-0.7
1,459,703	+		Xcc-8004.1521.1	0.68	-2.3
1,459,765	+		Xcc-8004.1521.1	0.81	-0.1
1,459,909	-				+0.5
1,459,937	-				+1.4
1,459,958	-				-0.4
1,460,021	+				-1.1
1,460,022	-				-1.1
1,460,057	+				+0.1
1,460,093	+				+0.7
1,460,093	+				+0.2
1,460,170	+		Xcc-8004.1522.1	0.19	-1.2
1,460,171	-		Xcc-8004.1522.1	0.19	+0.7
1,460,177	+		Xcc-8004.1522.1	0.20	-1.9
1,460,335	-		Xcc-8004.1522.1	0.41	+0.4
1,460,335	-		Xcc-8004.1522.1	0.41	+0.4
1,460,419	+		Xcc-8004.1522.1	0.52	+0.4
1,460,464	-		Xcc-8004.1522.1	0.58	+0.7
1,460,470	-		Xcc-8004.1522.1	0.59	-0.6
1,460,492	-		Xcc-8004.1522.1	0.62	+0.4
1,460,515	+		Xcc-8004.1522.1	0.65	+0.6
1,460,516	-		Xcc-8004.1522.1	0.65	-1.8
1,460,516	-		Xcc-8004.1522.1	0.65	-0.8
1,460,735	-				-1.9