Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.1519.1

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X
1,456,632	+		Xcc-8004.1518.1	0.27	+0.5
1,456,876	-		Xcc-8004.1518.1	0.62	+0.7
1,456,910	+		Xcc-8004.1518.1	0.67	-1.3
1,456,910	+		Xcc-8004.1518.1	0.67	-0.0
1,456,910	+		Xcc-8004.1518.1	0.67	+0.5
1,456,911	-		Xcc-8004.1518.1	0.67	+1.0
1,456,911	-		Xcc-8004.1518.1	0.67	+0.4
1,456,913	-		Xcc-8004.1518.1	0.67	+0.1
1,457,022	-		Xcc-8004.1518.1	0.82	+1.1
1,457,094	+				+0.8
1,457,095	-				+1.0
1,457,095	-				-1.1
1,457,153	+				+0.4
1,457,154	-				-0.0
1,457,154	-				+0.1
1,457,154	-				+0.4
1,457,157	+				+0.1
1,457,157	+				-0.3
1,457,157	+				+0.2
1,457,157	+				-0.9
1,457,157	+				-0.5
1,457,157	+				-1.6
1,457,157	+				+0.7
1,457,158	-				-0.2
1,457,158	-				-0.9
1,457,158	-				+1.4
1,457,158	-				+0.5
1,457,158	-				-0.8
1,457,158	-				+1.2
1,457,158	-				-0.5
1,457,159	+				+0.8
1,457,159	+				+0.5
1,457,160	-				+2.5
1,457,160	-				-0.6
1,457,160	-				-1.0
1,457,242	+				+0.5
1,457,312	+				-0.2
1,457,313	-				+0.5
1,457,313	-				+0.2
1,457,313	-				+0.4
1,457,413	+				+0.9
1,457,413	+				+0.7
1,457,414	-				+0.2
1,457,414	-				-1.8
1,457,414	-				+0.3
1,457,459	+				-1.0
1,457,460	-				+0.7
1,457,490	+				-0.3
1,457,595	+				-0.2
1,457,595	+				+0.1
1,457,595	+				-0.8
1,457,595	+				-0.7
1,457,595	+				+0.5
1,457,596	-				+0.7
1,458,228	+		Xcc-8004.1519.1	0.65	+0.2
1,458,228	+		Xcc-8004.1519.1	0.65	-0.7
1,458,229	-		Xcc-8004.1519.1	0.65	-1.5
1,458,231	+		Xcc-8004.1519.1	0.66	-1.4
1,458,232	-		Xcc-8004.1519.1	0.66	-0.1
1,458,232	-		Xcc-8004.1519.1	0.66	+1.5
1,458,232	-		Xcc-8004.1519.1	0.66	+0.1
1,458,232	-		Xcc-8004.1519.1	0.66	+1.1
1,458,374	-		Xcc-8004.1519.1	0.79	+0.5
1,458,451	+		Xcc-8004.1519.1	0.86	-0.3
1,458,452	-		Xcc-8004.1519.1	0.86	-1.4
1,458,452	-		Xcc-8004.1519.1	0.86	+0.2
1,458,452	-		Xcc-8004.1519.1	0.86	-0.8
1,458,550	-				-0.8
1,458,550	-				-1.0
1,458,550	-				-0.7
1,458,624	-				-0.6
1,458,652	-				-0.1
1,458,824	+				+0.8
1,458,824	+				-0.4
1,458,825	-				+1.3
1,458,825	-				-0.2
1,458,825	-				+0.9
1,458,918	+				+0.2
1,458,918	+				+0.0
1,459,100	+		Xcc-8004.1520.1	0.31	-1.1
1,459,100	+		Xcc-8004.1520.1	0.31	-0.8
1,459,101	-		Xcc-8004.1520.1	0.32	-0.8
1,459,101	-		Xcc-8004.1520.1	0.32	+1.1
1,459,160	+		Xcc-8004.1520.1	0.50	+0.9
1,459,160	+		Xcc-8004.1520.1	0.50	-0.0
1,459,161	-		Xcc-8004.1520.1	0.50	-0.3
1,459,161	-		Xcc-8004.1520.1	0.50	+0.4
1,459,205	+		Xcc-8004.1520.1	0.64	-0.6
1,459,205	+		Xcc-8004.1520.1	0.64	+0.2
1,459,205	+		Xcc-8004.1520.1	0.64	-1.1
1,459,206	-		Xcc-8004.1520.1	0.64	-1.1
1,459,319	+				-0.7