Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.1517.1

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X
1,454,834	-		Xcc-8004.1516.1	0.39	-1.1
1,454,888	-		Xcc-8004.1516.1	0.44	-0.1
1,454,938	+		Xcc-8004.1516.1	0.48	-0.2
1,454,938	+		Xcc-8004.1516.1	0.48	+0.1
1,454,939	-		Xcc-8004.1516.1	0.48	+0.9
1,454,942	-		Xcc-8004.1516.1	0.48	+1.5
1,455,275	+		Xcc-8004.1516.1	0.77	-1.7
1,455,275	+		Xcc-8004.1516.1	0.77	+0.7
1,455,276	-		Xcc-8004.1516.1	0.77	-0.1
1,455,279	+		Xcc-8004.1516.1	0.78	-0.8
1,455,280	-		Xcc-8004.1516.1	0.78	+0.3
1,455,280	-		Xcc-8004.1516.1	0.78	-0.6
1,455,280	-		Xcc-8004.1516.1	0.78	-0.8
1,455,305	+		Xcc-8004.1516.1	0.80	-1.2
1,455,305	+		Xcc-8004.1516.1	0.80	-0.1
1,455,347	-		Xcc-8004.1516.1	0.83	-1.2
1,455,347	-		Xcc-8004.1516.1	0.83	+0.1
1,455,374	+		Xcc-8004.1516.1	0.86	+0.3
1,455,374	+		Xcc-8004.1516.1	0.86	+0.3
1,455,375	-		Xcc-8004.1516.1	0.86	-1.8
1,455,469	+				-0.6
1,455,538	-				+0.1
1,455,596	+				+0.5
1,455,627	+		Xcc-8004.1517.1	0.10	-0.1
1,455,633	-		Xcc-8004.1517.1	0.11	+0.2
1,455,843	+		Xcc-8004.1517.1	0.34	-0.3
1,455,865	+		Xcc-8004.1517.1	0.36	-0.3
1,455,866	-		Xcc-8004.1517.1	0.37	+0.8
1,455,954	+		Xcc-8004.1517.1	0.46	+0.9
1,455,954	+		Xcc-8004.1517.1	0.46	+0.4
1,455,955	-		Xcc-8004.1517.1	0.46	-0.1
1,456,016	-		Xcc-8004.1517.1	0.53	+0.1
1,456,116	-		Xcc-8004.1517.1	0.64	+1.9
1,456,124	-		Xcc-8004.1517.1	0.65	-0.4
1,456,124	-		Xcc-8004.1517.1	0.65	+1.0
1,456,137	-		Xcc-8004.1517.1	0.66	+0.6
1,456,186	-		Xcc-8004.1517.1	0.71	+1.2
1,456,240	-		Xcc-8004.1517.1	0.77	-0.7
1,456,240	-		Xcc-8004.1517.1	0.77	+1.1
1,456,261	+		Xcc-8004.1517.1	0.80	-2.4
1,456,261	+		Xcc-8004.1517.1	0.80	+1.8
1,456,358	+				-0.2
1,456,362	+				-1.1
1,456,363	-				+0.1
1,456,369	+				+0.2
1,456,632	+		Xcc-8004.1518.1	0.27	+0.5
1,456,876	-		Xcc-8004.1518.1	0.62	+0.7
1,456,910	+		Xcc-8004.1518.1	0.67	-1.3
1,456,910	+		Xcc-8004.1518.1	0.67	-0.0
1,456,910	+		Xcc-8004.1518.1	0.67	+0.5
1,456,911	-		Xcc-8004.1518.1	0.67	+1.0
1,456,911	-		Xcc-8004.1518.1	0.67	+0.4
1,456,913	-		Xcc-8004.1518.1	0.67	+0.1
1,457,022	-		Xcc-8004.1518.1	0.82	+1.1
1,457,094	+				+0.8
1,457,095	-				+1.0
1,457,095	-				-1.1
1,457,153	+				+0.4
1,457,154	-				-0.0
1,457,154	-				+0.1
1,457,154	-				+0.4
1,457,157	+				+0.1
1,457,157	+				-0.3
1,457,157	+				+0.2
1,457,157	+				-0.9
1,457,157	+				-0.5
1,457,157	+				-1.6
1,457,157	+				+0.7
1,457,158	-				-0.2
1,457,158	-				-0.9
1,457,158	-				+1.4
1,457,158	-				+0.5
1,457,158	-				-0.8
1,457,158	-				+1.2
1,457,158	-				-0.5
1,457,159	+				+0.8
1,457,159	+				+0.5
1,457,160	-				+2.5
1,457,160	-				-0.6
1,457,160	-				-1.0
1,457,242	+				+0.5
1,457,312	+				-0.2
1,457,313	-				+0.5
1,457,313	-				+0.2
1,457,313	-				+0.4
1,457,413	+				+0.9
1,457,413	+				+0.7
1,457,414	-				+0.2
1,457,414	-				-1.8
1,457,414	-				+0.3